Sample 3300026720

Overview

Basic Information
IMG/M Taxon OID	3300026720 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0095510 \| Gp0072084 \| Ga0207440
Sample Name	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A2w-12 (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	17816435
Sequencing Scaffolds	14
Novel Protein Genes	14
Associated Families	14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	4
All Organisms → cellular organisms → Archaea	4
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	terrestrial biome → agricultural field → agricultural soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Wisconsin, United States
Coordinates	Lat. (^o)	43.3	Long. (^o)	-89.38	Alt. (m)	N/A	Depth (m)	0
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F000466	Metagenome / Metatranscriptome	1105	Y
F001757	Metagenome / Metatranscriptome	641	N
F005305	Metagenome / Metatranscriptome	405	N
F007651	Metagenome / Metatranscriptome	347	N
F015500	Metagenome / Metatranscriptome	254	Y
F021340	Metagenome	219	Y
F026602	Metagenome / Metatranscriptome	197	N
F049708	Metagenome / Metatranscriptome	146	Y
F055629	Metagenome / Metatranscriptome	138	Y
F063987	Metagenome / Metatranscriptome	129	N
F068085	Metagenome	125	Y
F080668	Metagenome	115	Y
F081936	Metagenome / Metatranscriptome	114	N
F090038	Metagenome	108	N

Family

Category

Number of Sequences

3D Structure?

F000466

Metagenome / Metatranscriptome

1105

F001757

Metagenome / Metatranscriptome

641

F005305

Metagenome / Metatranscriptome

405

F007651

Metagenome / Metatranscriptome

347

F015500

Metagenome / Metatranscriptome

254

F021340

Metagenome

219

F026602

Metagenome / Metatranscriptome

197

F049708

Metagenome / Metatranscriptome

146

F055629

Metagenome / Metatranscriptome

138

F063987

Metagenome / Metatranscriptome

129

F068085

Metagenome

125

F080668

Metagenome

115

F081936

Metagenome / Metatranscriptome

114

F090038

Metagenome

108

Scaffold	Taxonomy	Length	IMG/M Link
Ga0207440_100518	Not Available	884	Open in IMG/M
Ga0207440_100682	All Organisms → cellular organisms → Archaea	826	Open in IMG/M
Ga0207440_100855	All Organisms → cellular organisms → Archaea	772	Open in IMG/M
Ga0207440_100915	All Organisms → cellular organisms → Archaea	759	Open in IMG/M
Ga0207440_100932	All Organisms → cellular organisms → Bacteria	755	Open in IMG/M
Ga0207440_101100	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	717	Open in IMG/M
Ga0207440_101763	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	614	Open in IMG/M
Ga0207440_101813	Not Available	609	Open in IMG/M
Ga0207440_101874	Not Available	602	Open in IMG/M
Ga0207440_101980	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	591	Open in IMG/M
Ga0207440_102831	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	529	Open in IMG/M
Ga0207440_102993	Not Available	518	Open in IMG/M
Ga0207440_103154	All Organisms → cellular organisms → Archaea	509	Open in IMG/M
Ga0207440_103323	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	500	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0207440_100518

Not Available

884

Open in IMG/M

Ga0207440_100682

All Organisms → cellular organisms → Archaea

826

Open in IMG/M

Ga0207440_100855

All Organisms → cellular organisms → Archaea

772

Open in IMG/M

Ga0207440_100915

All Organisms → cellular organisms → Archaea

759

Open in IMG/M

Ga0207440_100932

All Organisms → cellular organisms → Bacteria

755

Open in IMG/M

Ga0207440_101100

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium

717

Open in IMG/M

Ga0207440_101763

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium

614

Open in IMG/M

Ga0207440_101813

Not Available

609

Open in IMG/M

Ga0207440_101874

Not Available

602

Open in IMG/M

Ga0207440_101980

All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon

591

Open in IMG/M

Ga0207440_102831

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium

529

Open in IMG/M

Ga0207440_102993

Not Available

518

Open in IMG/M

Ga0207440_103154

All Organisms → cellular organisms → Archaea

509

Open in IMG/M

Ga0207440_103323

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium

500

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0207440_100518	Ga0207440_1005181	F049708	GTVMRVKWVLIGFGILYLVFALSFIPTDKILPRPIEESWELVRDILWAGMTIISIGLLEVMSPLATPFASASGLRRGDVAEILLAVILVAAAVYSALRLRRKDLTPRWRGTHTFFLLLALTLVAIVRFTLYSWSHFA
Ga0207440_100682	Ga0207440_1006821	F026602	MEGINEEECNKIFNCKIISEDVLKYPDIVNPFTKNEDIAKTLVNNANDSKIMTEHTCQKLMDVDIVKKKDQKIGEQAPKYLVCLPXDTFALLT
Ga0207440_100855	Ga0207440_1008551	F005305	MEDLEKELGPLIENFQNLVKDAKSKKLESLREDEDFKKEFNELSKDVIEPVMRKFESYLESKDVNSSVHIQSQIVAGKNPSIEFSLHLKLTHESRYPNIKFSSSGEKISVQEDRLMTKDEVSQDMIPEYYDKELITEEFVKERLIRLIKSCFDKDWQSFYS
Ga0207440_100915	Ga0207440_1009151	F090038	MAFLSKKLSQELLNLDIDEGIRIESNKNIKCKMYINKRTSGYFVLEIEDTNSTNIKEFRFYRDIKPIHRLIDKIFGKQY
Ga0207440_100932	Ga0207440_1009321	F021340	LQTFQAQRTIARSNEARSQFCHVAIVTLFFVIVLGASLFLGTVMVIGTFHGVDPSNELTANGRAGRIARTLQDGTLCHYMIFDNKTAQTVEDRIGRCDENKPKPKQERPATFTWGK
Ga0207440_101100	Ga0207440_1011002	F001757	MMRILKPLQDKATTGAGKRLVLPEPRRVRFLIRGEGSVSAGAVTIECCPESTKAGKFWMELATIAVPADYGLAQYYTEEASGLFRARISRPVSNGTVTVTPLVS
Ga0207440_101763	Ga0207440_1017631	F000466	KSWKTAPSQGVVKRDWVPTGRIDFATRLNGTLEESDQPSEFKLLVEERRIVESITGNENLEIQWRLATLNEAKAVVAQYHKYLAENALIRSVSDETVSLPPPKKVQKIQETTAA
Ga0207440_101813	Ga0207440_1018131	F055629	VGKSLWEDPWFFAAVAPNDGQEQSELCPVTGYACEGDLSYLCEEYGCARKGGLSPRSEEN
Ga0207440_101874	Ga0207440_1018742	F068085	MIVLKYILLFTCLGIGLALCVGVISILRSPPDNGPPAWFAAAFGAMFFWGAFALARW
Ga0207440_101980	Ga0207440_1019801	F007651	MSNDLNELIARKDKLEGELHHELSSDYNELMKNLSESFRDMHENSVQYYKQKANEELDKMEKNIQSGNKLSAINQKLLADT
Ga0207440_102831	Ga0207440_1028311	F015500	GLVEVEVCIVSVEEPPVPIDAGLKPPLVIPVGKPDSLPTLKFTVPVKPLRGVTVTVYVESPPGTTSCAAGPTVMEKSGLVGSTVIVRVGGLGSELPVASMTVSEVVYVPGPPNVMFPGFCAVDVAGFPPGNTQEYFDAVVLVPKLITLPAVIVISPDGAVMAPVGGTRE
Ga0207440_102993	Ga0207440_1029932	F080668	RLGFHALMQAVGVDERVMTLIELFANPKLNAEITRQLAAGQRSVSISGEDAAKTGEF
Ga0207440_103154	Ga0207440_1031541	F081936	KVIXLLDRKLNAKKPSPPNVEASVNPKVEQLAHVLEITLIVVPDSADLLNFNFRFLIIYRLKFTKIAIRTELIQVKINASIISLGT
Ga0207440_103323	Ga0207440_1033231	F063987	MKFVSRTKSMAVPHQILGASTNEKRELLMCGHSLIARLTIAVFVFQMLGVTSVGHAERPDSTAGTSNAGTRKLFIDPSSTSVALRGKASLIVSPLTHRDGNYVGDYQLKVKPYSFKSEKGSLLLAASDDAV

Scaffold ID

Protein ID

Family

Sequence

Ga0207440_100518

Ga0207440_1005181

F049708

GTVMRVKWVLIGFGILYLVFALSFIPTDKILPRPIEESWELVRDILWAGMTIISIGLLEVMSPLATPFASASGLRRGDVAEILLAVILVAAAVYSALRLRRKDLTPRWRGTHTFFLLLALTLVAIVRFTLYSWSHFA

Ga0207440_100682

Ga0207440_1006821

F026602

MEGINEEECNKIFNCKIISEDVLKYPDIVNPFTKNEDIAKTLVNNANDSKIMTEHTCQKLMDVDIVKKKDQKIGEQAPKYLVCLPXDTFALLT

Ga0207440_100855

Ga0207440_1008551

F005305

MEDLEKELGPLIENFQNLVKDAKSKKLESLREDEDFKKEFNELSKDVIEPVMRKFESYLESKDVNSSVHIQSQIVAGKNPSIEFSLHLKLTHESRYPNIKFSSSGEKISVQEDRLMTKDEVSQDMIPEYYDKELITEEFVKERLIRLIKSCFDKDWQSFYS

Ga0207440_100915

Ga0207440_1009151

F090038

MAFLSKKLSQELLNLDIDEGIRIESNKNIKCKMYINKRTSGYFVLEIEDTNSTNIKEFRFYRDIKPIHRLIDKIFGKQY

Ga0207440_100932

Ga0207440_1009321

F021340

LQTFQAQRTIARSNEARSQFCHVAIVTLFFVIVLGASLFLGTVMVIGTFHGVDPSNELTANGRAGRIARTLQDGTLCHYMIFDNKTAQTVEDRIGRCDENKPKPKQERPATFTWGK

Ga0207440_101100

Ga0207440_1011002

F001757

MMRILKPLQDKATTGAGKRLVLPEPRRVRFLIRGEGSVSAGAVTIECCPESTKAGKFWMELATIAVPADYGLAQYYTEEASGLFRARISRPVSNGTVTVTPLVS

Ga0207440_101763

Ga0207440_1017631

F000466

KSWKTAPSQGVVKRDWVPTGRIDFATRLNGTLEESDQPSEFKLLVEERRIVESITGNENLEIQWRLATLNEAKAVVAQYHKYLAENALIRSVSDETVSLPPPKKVQKIQETTAA

Ga0207440_101813

Ga0207440_1018131

F055629

VGKSLWEDPWFFAAVAPNDGQEQSELCPVTGYACEGDLSYLCEEYGCARKGGLSPRSEEN

Ga0207440_101874

Ga0207440_1018742

F068085

MIVLKYILLFTCLGIGLALCVGVISILRSPPDNGPPAWFAAAFGAMFFWGAFALARW

Ga0207440_101980

Ga0207440_1019801

F007651

MSNDLNELIARKDKLEGELHHELSSDYNELMKNLSESFRDMHENSVQYYKQKANEELDKMEKNIQSGNKLSAINQKLLADT

Ga0207440_102831

Ga0207440_1028311

F015500

GLVEVEVCIVSVEEPPVPIDAGLKPPLVIPVGKPDSLPTLKFTVPVKPLRGVTVTVYVESPPGTTSCAAGPTVMEKSGLVGSTVIVRVGGLGSELPVASMTVSEVVYVPGPPNVMFPGFCAVDVAGFPPGNTQEYFDAVVLVPKLITLPAVIVISPDGAVMAPVGGTRE

Ga0207440_102993

Ga0207440_1029932

F080668

RLGFHALMQAVGVDERVMTLIELFANPKLNAEITRQLAAGQRSVSISGEDAAKTGEF

Ga0207440_103154

Ga0207440_1031541

F081936

KVIXLLDRKLNAKKPSPPNVEASVNPKVEQLAHVLEITLIVVPDSADLLNFNFRFLIIYRLKFTKIAIRTELIQVKINASIISLGT

Ga0207440_103323

Ga0207440_1033231

F063987

MKFVSRTKSMAVPHQILGASTNEKRELLMCGHSLIARLTIAVFVFQMLGVTSVGHAERPDSTAGTSNAGTRKLFIDPSSTSVALRGKASLIVSPLTHRDGNYVGDYQLKVKPYSFKSEKGSLLLAASDDAV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300026720: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A2w-12 (SPAdes)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences