3300026715: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-SCHO22-A (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300026715
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0095510 | Gp0091539 | Ga0207604
• Sample Name: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-SCHO22-A (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 16736043
• Sequencing Scaffolds: 8
• Novel Protein Genes: 8
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2
Not Available	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → agricultural field → agricultural soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Wisconsin, United States
• Coordinates
  • Lat. (^o): 43.3
  • Long. (^o): -89.38
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000466	Metagenome / Metatranscriptome	1105	Y
F001823	Metagenome / Metatranscriptome	630	Y
F017166	Metagenome / Metatranscriptome	242	Y
F029488	Metagenome / Metatranscriptome	188	N
F042319	Metagenome / Metatranscriptome	158	Y
F061958	Metagenome / Metatranscriptome	131	N
F064778	Metagenome / Metatranscriptome	128	Y
F070071	Metagenome / Metatranscriptome	123	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0207604_100095	All Organisms → cellular organisms → Bacteria → Proteobacteria	1355
Ga0207604_100198	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1174
Ga0207604_100441	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	946
Ga0207604_100713	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	816
Ga0207604_100801	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	786
Ga0207604_101475	Not Available	636
Ga0207604_101743	All Organisms → cellular organisms → Bacteria	600
Ga0207604_102038	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	569

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0207604_100095	Ga0207604_1000952	F001823	MRAIDRDLIRAGHYGQRPGVPHSKAEHMAAPTKAANVKKVLANSE
Ga0207604_100198	Ga0207604_1001982	F042319	MTDITYQTATAGIASPSALLPRIAAWCTHFAEGTREGREIAARYHALAQLSSPELARRGLNRHMIARVALTGY
Ga0207604_100441	Ga0207604_1004412	F017166	VRFATILALAVMVFTGWLYLGEKDAVRSTKADVVAAADRTAVALSQSTDPERNTDADAEDVFKKHVQTPSALEDLVVKQSVESISAGRLRQSVTISARAHTTLSEFFSMQGAEIEITATHDFDRKK
Ga0207604_100713	Ga0207604_1007131	F064778	VAMLNPSSKPMEKAAFSAACERGKPPGVPGAANGAGYSGDGRKGQEITNLGRQ
Ga0207604_100801	Ga0207604_1008011	F061958	MKRQVSIYVAALLALLYAGLQSGARAQVFDFGQIEEFESLGSGTQKGGSPPKTIIDDGARHTVLFTILESNTEAKIYWKSKDGSQTTIMRGQGL
Ga0207604_101475	Ga0207604_1014751	F070071	VFIWGEAFDMLTIIGATLVAGTSAGFWYLLPRNGKEHPLVQNNGVGSMITIVILTLFIVGIAVMCEGLLS
Ga0207604_101743	Ga0207604_1017431	F029488	PIALMTLAVLLLAGCAGYSPECVTGTGTKDCASGTLGHQQMTQEREGDETVASIDHARCRAYAAPGSSEYLACRQRAAKSRGEGR
Ga0207604_102038	Ga0207604_1020381	F000466	VKKDWVPTGRIDFATRLNGTLEESDQPSEFKLLVEERRIVESITGNENLEIQWRLATLNEAKAVVAQYHKYLAENALIRSVSDETVSLPPPKKVQKIQETTAA