Sample 3300026696

Overview

Basic Information
IMG/M Taxon OID	3300026696 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0053063 \| Gp0054366 \| Ga0208476
Sample Name	Grasslands soil microbial communities from Gorham, Kansas, USA that are Nitrogen fertilized - NN630 (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	13659735
Sequencing Scaffolds	20
Novel Protein Genes	22
Associated Families	22

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Aminicenantes	1
Not Available	8
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Acidobacteria	2
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	grassland biome → land → fertilized soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Gorham, Kansas, USA
Coordinates	Lat. (^o)	39.05	Long. (^o)	-99.1	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F000265	Metagenome / Metatranscriptome	1420	Y
F000835	Metagenome	869	Y
F001012	Metagenome / Metatranscriptome	806	Y
F004567	Metagenome / Metatranscriptome	433	Y
F006511	Metagenome / Metatranscriptome	371	Y
F009030	Metagenome / Metatranscriptome	324	Y
F009235	Metagenome / Metatranscriptome	321	Y
F009289	Metagenome / Metatranscriptome	320	Y
F009498	Metagenome / Metatranscriptome	317	Y
F022011	Metagenome	216	N
F024347	Metagenome	206	Y
F037923	Metagenome	167	Y
F040714	Metagenome / Metatranscriptome	161	Y
F049208	Metagenome	147	N
F053318	Metagenome	141	Y
F053883	Metagenome / Metatranscriptome	140	Y
F054649	Metagenome / Metatranscriptome	139	Y
F065885	Metagenome	127	Y
F073208	Metagenome	120	N
F083219	Metagenome	113	N
F097550	Metagenome	104	N
F098847	Metagenome / Metatranscriptome	103	Y

Family

Category

Number of Sequences

3D Structure?

F000265

Metagenome / Metatranscriptome

1420

F000835

Metagenome

869

F001012

Metagenome / Metatranscriptome

806

F004567

Metagenome / Metatranscriptome

433

F006511

Metagenome / Metatranscriptome

371

F009030

Metagenome / Metatranscriptome

324

F009235

Metagenome / Metatranscriptome

321

F009289

Metagenome / Metatranscriptome

320

F009498

Metagenome / Metatranscriptome

317

F022011

Metagenome

216

F024347

Metagenome

206

F037923

Metagenome

167

F040714

Metagenome / Metatranscriptome

161

F049208

Metagenome

147

F053318

Metagenome

141

F053883

Metagenome / Metatranscriptome

140

F054649

Metagenome / Metatranscriptome

139

F065885

Metagenome

127

F073208

Metagenome

120

F083219

Metagenome

113

F097550

Metagenome

104

F098847

Metagenome / Metatranscriptome

103

Scaffold	Taxonomy	Length	IMG/M Link
Ga0208476_100128	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1290	Open in IMG/M
Ga0208476_100285	All Organisms → cellular organisms → Bacteria	992	Open in IMG/M
Ga0208476_100300	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	978	Open in IMG/M
Ga0208476_100353	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Aminicenantes	927	Open in IMG/M
Ga0208476_100438	Not Available	867	Open in IMG/M
Ga0208476_100616	Not Available	779	Open in IMG/M
Ga0208476_100685	Not Available	753	Open in IMG/M
Ga0208476_100764	Not Available	730	Open in IMG/M
Ga0208476_100852	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	708	Open in IMG/M
Ga0208476_100992	Not Available	673	Open in IMG/M
Ga0208476_101715	All Organisms → cellular organisms → Bacteria	567	Open in IMG/M
Ga0208476_101817	All Organisms → cellular organisms → Bacteria → Acidobacteria	558	Open in IMG/M
Ga0208476_101879	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	552	Open in IMG/M
Ga0208476_101998	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	543	Open in IMG/M
Ga0208476_102087	All Organisms → cellular organisms → Bacteria → Acidobacteria	535	Open in IMG/M
Ga0208476_102099	All Organisms → cellular organisms → Bacteria	534	Open in IMG/M
Ga0208476_102162	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	530	Open in IMG/M
Ga0208476_102187	Not Available	528	Open in IMG/M
Ga0208476_102276	Not Available	520	Open in IMG/M
Ga0208476_102331	Not Available	517	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0208476_100128

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria

1290

Open in IMG/M

Ga0208476_100285

All Organisms → cellular organisms → Bacteria

992

Open in IMG/M

Ga0208476_100300

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia

978

Open in IMG/M

Ga0208476_100353

All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Aminicenantes

927

Open in IMG/M

Ga0208476_100438

Not Available

867

Open in IMG/M

Ga0208476_100616

Not Available

779

Open in IMG/M

Ga0208476_100685

Not Available

753

Open in IMG/M

Ga0208476_100764

Not Available

730

Open in IMG/M

Ga0208476_100852

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium

708

Open in IMG/M

Ga0208476_100992

Not Available

673

Open in IMG/M

Ga0208476_101715

All Organisms → cellular organisms → Bacteria

567

Open in IMG/M

Ga0208476_101817

All Organisms → cellular organisms → Bacteria → Acidobacteria

558

Open in IMG/M

Ga0208476_101879

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

552

Open in IMG/M

Ga0208476_101998

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium

543

Open in IMG/M

Ga0208476_102087

All Organisms → cellular organisms → Bacteria → Acidobacteria

535

Open in IMG/M

Ga0208476_102099

All Organisms → cellular organisms → Bacteria

534

Open in IMG/M

Ga0208476_102162

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

530

Open in IMG/M

Ga0208476_102187

Not Available

528

Open in IMG/M

Ga0208476_102276

Not Available

520

Open in IMG/M

Ga0208476_102331

Not Available

517

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0208476_100128	Ga0208476_1001282	F009289	MPEPADDLNPTDRELLRRAELALTQLNNRHGLEPDQSATLTAIRLRLEGKSRASLDDLLTAGKDLGGKDPLTEAMTRRQQAPSFDDLVAGAEQKPKKSLDDLL
Ga0208476_100285	Ga0208476_1002851	F000265	REPAGMPETRGVQASEEVKAEWSTAYKYYLRAPGDRFDKKKDRTQRIDYVAQEMKLTRKQAKRRIRNYEAWQRNIKKGIVRP
Ga0208476_100300	Ga0208476_1003001	F098847	VLGTLELGLGALLLLTREVDPDLLVPIGAAWGAVSGILLLAQGLGLRHVARTWRQASGGRGMRG
Ga0208476_100353	Ga0208476_1003531	F083219	LKILQRTIRRKRGKHCARIRFEDNNGKIHEIMRTADNKSAAKTRLAQLEAEILEKGTARFEAGKVTFRQLAEYVKTRFYVPATYSEDGSKISGVRSVQAAHSSIKKLVEYFGDKDITKIDDEALEKYKARRLKTVSIATVDRELCKARKMFGVALAKKWVFDNPFKTEAGKQLIQVAAEKGAVEHVLSDAEEQRLFKALQTADRRHTIPVFIAALETGARWSSLVEFLKWKH
Ga0208476_100438	Ga0208476_1004381	F009235	VAEQRTFRALGGVDEGTLPPPGEIADALRAEFERVFTLKASLRGEAEAGVSPTGRRTTAQDEAKLRTLVASVEGASRLAIRLRLLSPAQVRALWAEAMGRGLYDGWDAGQSAYDQAVEDQSTEDQEAAAEPG
Ga0208476_100616	Ga0208476_1006161	F073208	MIAQTEEGPHRRATAVVTIAAGVTSLASLIVGLSGADFDFEAVSEAATFIALGTDAVEPVRWGLWLSMFGYLLLVPVALLLLRWLRQDDPVVADLSTVAAGFYILLGAAGASVLASTLPDLIQQYADADAAMRAGLLNDFDLARRIAEDGLQGVVQNVAGAAWFLGMGSLLRRHRPALGAAAIAVGAFLVVNAAGIMVDVEALRFIGLTGNVLLAPAWAIGMGTSLLRSP
Ga0208476_100685	Ga0208476_1006852	F054649	LSYCPRSSLPVEVLAWLARRLAYLIPPRPPGLGGNRPLALEVRLDAVAAVILDGLSYRRAGRMVGISKTEVGDSMDLLLPKLAALGCCQPDGTFITTLDDVGERLVEM
Ga0208476_100764	Ga0208476_1007641	F009498	MTKNTVSIALDRESLARFARLLGNRNLATGAHCGDDDGDIDGFCGTAASGAHCGDDIDG
Ga0208476_100852	Ga0208476_1008521	F001012	VEHLAKLLADEARLDEKIRETRAALTFVQKRVSESMAQHFITMAEPRIQMPEDLMREEQSYERLLQALQDMKSEITKQIRPVEEQIIQANVDHLRQSFSQESRRLAKCLEEIDDNILACRQYLQDYERIRSGLQSLNEKLSQLGADSLQIADGLPTVDLGEIIRQRIDHLRSQGK
Ga0208476_100992	Ga0208476_1009921	F006511	MVTHYPPARLRSNSDQPTAITNVLLTASGSSNAGEIPLGTPTCSARTRRGRWALYPNGDQVVVVWPGGALAGPPGEVAGELDRLGGAGLDELDRGAGWAIRQFLTDPAAADAASWSSTRTRSWSTPAVGYWLSGPTNQPDHQTQPSA
Ga0208476_101465	Ga0208476_1014651	F097550	KRFPLIAKALNVSVARIAYLAGYKTAPKRNDANAQLRRIHDLLRIGRLDLALESFLLLYYHIGRLDPGLNSYLDGGIAPANFATAVISLDRLPKWLFEVIAQCMQKMFSERQDPKWLAYNLRRVVLKECTDEMQKKLSPLSLQVPGYIP
Ga0208476_101715	Ga0208476_1017151	F009030	MKSCPKCNRTFPDEGQKFCTFDGGLLIAPQTFDPNATIRATSIDLNAPAERPTSRDLPDPNATIIESYPA
Ga0208476_101817	Ga0208476_1018172	F053318	MKHIQRAIALSGLLVLLTFSSALGQTDRQTIIHIPFNFSVGEKSFAAGRYVIERNRKDS
Ga0208476_101879	Ga0208476_1018791	F065885	MSKHFVSVLGAVMLTLAIATIALAQETTTTVTKTVQNPDGTYTIIEYPAKKEVKINLTPV
Ga0208476_101979	Ga0208476_1019792	F053883	EIEANRNNFAQINDLSKKISQVKQEIEDLYREYTG
Ga0208476_101998	Ga0208476_1019981	F040714	VKGIAVVVTAFIFLPGSVWMLLASNFGALKGYLIAATAFFGFLVMLSAVWLFGLPGTTPLTGPKGTQPTFKFFTLEDPVAATYDSVRDFQGGAGNGWQEAPAEAEEGTPEATLKADLDVARQTAVEDLKDEFNKDVEDSSEELDVINLDAKTYYSIQDGTEV
Ga0208476_102087	Ga0208476_1020872	F000835	VDELTRKVLNSFAHWRKETLDLHELFEAGGNDPEARTAVFDTVERLVKEGLLAEEGNDFYSLTEKGKAAAK
Ga0208476_102099	Ga0208476_1020992	F004567	MSSSSQGNYACSNWRADKNLMKANTTRNVTSVVMLVVLSPFLALAMLVSIKTVGIKDNYVLLVLLTLSSAVLSGINGFGRRTSTPVPLSAANARGFYPSQTCVRLSARSSNNA
Ga0208476_102162	Ga0208476_1021622	F022011	VSTEVKDDLLGSLDERIRRISREVIVEHKAMEQQSGNSSIADSEDEKLAVTLRRIMAKEFVSIKETALLLNCSDGHIRNLVGKAQKGKASHPIPFLDLDGVTVFPRVKLLEWAKQPKKKLRAVS
Ga0208476_102187	Ga0208476_1021871	F037923	ALVAGPLFFAIIRVRGRGVEVTMAAEFLLPRTAAWVWHGEPRQIFGLDAVFVRCASGTSGSTPSGFSYADNFRAWMLSRGPAVIPWSWFGPPHSDDGVGSADALAAIAPGHQVYIVEVGPGTPPDQVTAFAARLRQREPIAALGFSTWPTRAEAEQAAVPWDACVDAFDFGLPQV
Ga0208476_102276	Ga0208476_1022762	F049208	MPNNVITFTRTKGETVTIRLNPKDIRPRDWAFLKQWAEKLGVSISVLLKRMLIAGIEGSHYAEKIPEK
Ga0208476_102331	Ga0208476_1023312	F024347	LELAREAGVPLPEDLRPHDLRRTCATLALEQNPLEYRKVLRKLGHTYPSSAAPYLIATDADVEDEQNDLIDIFVNPYIEKRGKR

Scaffold ID

Protein ID

Family

Sequence

Ga0208476_100128

Ga0208476_1001282

F009289

MPEPADDLNPTDRELLRRAELALTQLNNRHGLEPDQSATLTAIRLRLEGKSRASLDDLLTAGKDLGGKDPLTEAMTRRQQAPSFDDLVAGAEQKPKKSLDDLL

Ga0208476_100285

Ga0208476_1002851

F000265

REPAGMPETRGVQASEEVKAEWSTAYKYYLRAPGDRFDKKKDRTQRIDYVAQEMKLTRKQAKRRIRNYEAWQRNIKKGIVRP

Ga0208476_100300

Ga0208476_1003001

F098847

VLGTLELGLGALLLLTREVDPDLLVPIGAAWGAVSGILLLAQGLGLRHVARTWRQASGGRGMRG

Ga0208476_100353

Ga0208476_1003531

F083219

LKILQRTIRRKRGKHCARIRFEDNNGKIHEIMRTADNKSAAKTRLAQLEAEILEKGTARFEAGKVTFRQLAEYVKTRFYVPATYSEDGSKISGVRSVQAAHSSIKKLVEYFGDKDITKIDDEALEKYKARRLKTVSIATVDRELCKARKMFGVALAKKWVFDNPFKTEAGKQLIQVAAEKGAVEHVLSDAEEQRLFKALQTADRRHTIPVFIAALETGARWSSLVEFLKWKH

Ga0208476_100438

Ga0208476_1004381

F009235

VAEQRTFRALGGVDEGTLPPPGEIADALRAEFERVFTLKASLRGEAEAGVSPTGRRTTAQDEAKLRTLVASVEGASRLAIRLRLLSPAQVRALWAEAMGRGLYDGWDAGQSAYDQAVEDQSTEDQEAAAEPG

Ga0208476_100616

Ga0208476_1006161

F073208

MIAQTEEGPHRRATAVVTIAAGVTSLASLIVGLSGADFDFEAVSEAATFIALGTDAVEPVRWGLWLSMFGYLLLVPVALLLLRWLRQDDPVVADLSTVAAGFYILLGAAGASVLASTLPDLIQQYADADAAMRAGLLNDFDLARRIAEDGLQGVVQNVAGAAWFLGMGSLLRRHRPALGAAAIAVGAFLVVNAAGIMVDVEALRFIGLTGNVLLAPAWAIGMGTSLLRSP

Ga0208476_100685

Ga0208476_1006852

F054649

LSYCPRSSLPVEVLAWLARRLAYLIPPRPPGLGGNRPLALEVRLDAVAAVILDGLSYRRAGRMVGISKTEVGDSMDLLLPKLAALGCCQPDGTFITTLDDVGERLVEM

Ga0208476_100764

Ga0208476_1007641

F009498

MTKNTVSIALDRESLARFARLLGNRNLATGAHCGDDDGDIDGFCGTAASGAHCGDDIDG

Ga0208476_100852

Ga0208476_1008521

F001012

VEHLAKLLADEARLDEKIRETRAALTFVQKRVSESMAQHFITMAEPRIQMPEDLMREEQSYERLLQALQDMKSEITKQIRPVEEQIIQANVDHLRQSFSQESRRLAKCLEEIDDNILACRQYLQDYERIRSGLQSLNEKLSQLGADSLQIADGLPTVDLGEIIRQRIDHLRSQGK

Ga0208476_100992

Ga0208476_1009921

F006511

MVTHYPPARLRSNSDQPTAITNVLLTASGSSNAGEIPLGTPTCSARTRRGRWALYPNGDQVVVVWPGGALAGPPGEVAGELDRLGGAGLDELDRGAGWAIRQFLTDPAAADAASWSSTRTRSWSTPAVGYWLSGPTNQPDHQTQPSA

Ga0208476_101465

Ga0208476_1014651

F097550

KRFPLIAKALNVSVARIAYLAGYKTAPKRNDANAQLRRIHDLLRIGRLDLALESFLLLYYHIGRLDPGLNSYLDGGIAPANFATAVISLDRLPKWLFEVIAQCMQKMFSERQDPKWLAYNLRRVVLKECTDEMQKKLSPLSLQVPGYIP

Ga0208476_101715

Ga0208476_1017151

F009030

MKSCPKCNRTFPDEGQKFCTFDGGLLIAPQTFDPNATIRATSIDLNAPAERPTSRDLPDPNATIIESYPA

Ga0208476_101817

Ga0208476_1018172

F053318

MKHIQRAIALSGLLVLLTFSSALGQTDRQTIIHIPFNFSVGEKSFAAGRYVIERNRKDS

Ga0208476_101879

Ga0208476_1018791

F065885

MSKHFVSVLGAVMLTLAIATIALAQETTTTVTKTVQNPDGTYTIIEYPAKKEVKINLTPV

Ga0208476_101979

Ga0208476_1019792

F053883

EIEANRNNFAQINDLSKKISQVKQEIEDLYREYTG

Ga0208476_101998

Ga0208476_1019981

F040714

VKGIAVVVTAFIFLPGSVWMLLASNFGALKGYLIAATAFFGFLVMLSAVWLFGLPGTTPLTGPKGTQPTFKFFTLEDPVAATYDSVRDFQGGAGNGWQEAPAEAEEGTPEATLKADLDVARQTAVEDLKDEFNKDVEDSSEELDVINLDAKTYYSIQDGTEV

Ga0208476_102087

Ga0208476_1020872

F000835

VDELTRKVLNSFAHWRKETLDLHELFEAGGNDPEARTAVFDTVERLVKEGLLAEEGNDFYSLTEKGKAAAK

Ga0208476_102099

Ga0208476_1020992

F004567

MSSSSQGNYACSNWRADKNLMKANTTRNVTSVVMLVVLSPFLALAMLVSIKTVGIKDNYVLLVLLTLSSAVLSGINGFGRRTSTPVPLSAANARGFYPSQTCVRLSARSSNNA

Ga0208476_102162

Ga0208476_1021622

F022011

VSTEVKDDLLGSLDERIRRISREVIVEHKAMEQQSGNSSIADSEDEKLAVTLRRIMAKEFVSIKETALLLNCSDGHIRNLVGKAQKGKASHPIPFLDLDGVTVFPRVKLLEWAKQPKKKLRAVS

Ga0208476_102187

Ga0208476_1021871

F037923

ALVAGPLFFAIIRVRGRGVEVTMAAEFLLPRTAAWVWHGEPRQIFGLDAVFVRCASGTSGSTPSGFSYADNFRAWMLSRGPAVIPWSWFGPPHSDDGVGSADALAAIAPGHQVYIVEVGPGTPPDQVTAFAARLRQREPIAALGFSTWPTRAEAEQAAVPWDACVDAFDFGLPQV

Ga0208476_102276

Ga0208476_1022762

F049208

MPNNVITFTRTKGETVTIRLNPKDIRPRDWAFLKQWAEKLGVSISVLLKRMLIAGIEGSHYAEKIPEK

Ga0208476_102331

Ga0208476_1023312

F024347

LELAREAGVPLPEDLRPHDLRRTCATLALEQNPLEYRKVLRKLGHTYPSSAAPYLIATDADVEDEQNDLIDIFVNPYIEKRGKR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300026696: Grasslands soil microbial communities from Gorham, Kansas, USA that are Nitrogen fertilized - NN630 (SPAdes)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences