Metagenome / Metatranscriptome Family F098847

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F098847
Family Type	Metagenome / Metatranscriptome
Number of Sequences	103
Average Sequence Length	83 residues
Representative Sequence	LRILGGFAAEERVGRRWTLGGIVLGTLELGLGALLLLTREVDPDLLVPIGAAWGAVSGILLLAQGLGLRRVARTWRQASGTPTRDL
Number of Associated Samples	82
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	3.88 %
% of genes near scaffold ends (potentially truncated)	95.15 %
% of genes from short scaffolds (< 2000 bps)	94.17 %
Associated GOLD sequencing projects	79
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.38

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (77.670 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (37.864 % of family members)
Environment Ontology (ENVO)	Unclassified (38.835 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (37.864 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 64.91% β-sheet: 0.00% Coil/Unstructured: 35.09%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.38
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.38
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF07784	DUF1622	19.42
PF00196	GerE	4.85
PF05726	Pirin_C	1.94
PF06305	LapA_dom	1.94
PF06863	DUF1254	1.94
PF00884	Sulfatase	1.94
PF03458	Gly_transporter	1.94
PF07885	Ion_trans_2	1.94
PF01243	Putative_PNPOx	1.94
PF10739	DUF2550	0.97
PF13384	HTH_23	0.97
PF13604	AAA_30	0.97
PF13751	DDE_Tnp_1_6	0.97
PF03781	FGE-sulfatase	0.97

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG4828	Uncharacterized membrane protein	Function unknown [S]	19.42
COG1741	Redox-sensitive bicupin YhaK, pirin superfamily	General function prediction only [R]	1.94
COG2860	Uncharacterized membrane protein YeiH	Function unknown [S]	1.94
COG3771	Lipopolysaccharide assembly protein YciS/LapA, DUF1049 family	Cell wall/membrane/envelope biogenesis [M]	1.94
COG5361	Uncharacterized conserved protein	Mobilome: prophages, transposons [X]	1.94
COG1262	Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain	Posttranslational modification, protein turnover, chaperones [O]	0.97

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	77.67 %
Unclassified	root	N/A	22.33 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	77.67 %
Unclassified	root	N/A	22.33 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	77.67 %
Unclassified	root	N/A	22.33 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	66.99 %
Unclassified	root	N/A	22.33 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	43.69 %
Unclassified	root	N/A	22.33 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	35.92 %
Unclassified	root	N/A	22.33 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	22.33 %
Frankiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales	1.94 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	0.97 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	22.33 %
Frankiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae	1.94 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.97 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	22.33 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	1.94 %
Actinoplanes	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes	0.97 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	22.33 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	1.94 %
Actinoplanes digitatis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes → Actinoplanes digitatis	0.97 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.97 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000858\|JGI10213J12805_10788123	All Organisms → cellular organisms → Bacteria	609	Open in IMG/M
3300000956\|JGI10216J12902_102585690	All Organisms → cellular organisms → Bacteria → Terrabacteria group	694	Open in IMG/M
3300005719\|Ga0068861_100626927	Not Available	990	Open in IMG/M
3300006845\|Ga0075421_101154046	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	867	Open in IMG/M
3300006846\|Ga0075430_100805143	Not Available	774	Open in IMG/M
3300006852\|Ga0075433_10665590	All Organisms → cellular organisms → Bacteria	913	Open in IMG/M
3300006880\|Ga0075429_100503122	Not Available	1062	Open in IMG/M
3300006894\|Ga0079215_10731145	All Organisms → cellular organisms → Bacteria → Terrabacteria group	676	Open in IMG/M
3300009098\|Ga0105245_12785992	All Organisms → cellular organisms → Bacteria	542	Open in IMG/M
3300009156\|Ga0111538_10957594	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1083	Open in IMG/M
3300009157\|Ga0105092_10097497	All Organisms → cellular organisms → Bacteria	1610	Open in IMG/M
3300009797\|Ga0105080_1012616	Not Available	796	Open in IMG/M
3300009803\|Ga0105065_1021148	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	771	Open in IMG/M
3300009810\|Ga0105088_1008866	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1463	Open in IMG/M
3300009816\|Ga0105076_1000218	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	5460	Open in IMG/M
3300009820\|Ga0105085_1030802	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	946	Open in IMG/M
3300009821\|Ga0105064_1066082	All Organisms → cellular organisms → Bacteria → Terrabacteria group	711	Open in IMG/M
3300009837\|Ga0105058_1053535	Not Available	906	Open in IMG/M
3300009840\|Ga0126313_10856431	Not Available	741	Open in IMG/M
3300010036\|Ga0126305_10500719	All Organisms → cellular organisms → Bacteria → Terrabacteria group	810	Open in IMG/M
3300010040\|Ga0126308_11121592	Not Available	555	Open in IMG/M
3300012021\|Ga0120192_10150244	All Organisms → cellular organisms → Bacteria → Terrabacteria group	509	Open in IMG/M
3300012159\|Ga0137344_1076902	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	613	Open in IMG/M
3300012939\|Ga0162650_100046316	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	704	Open in IMG/M
3300012939\|Ga0162650_100053306	All Organisms → cellular organisms → Bacteria → Terrabacteria group	666	Open in IMG/M
3300014497\|Ga0182008_10149792	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1170	Open in IMG/M
3300014497\|Ga0182008_10606973	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	615	Open in IMG/M
3300015371\|Ga0132258_10314508	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3857	Open in IMG/M
3300015373\|Ga0132257_100101839	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3307	Open in IMG/M
3300015374\|Ga0132255_101289861	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1101	Open in IMG/M
3300017965\|Ga0190266_10173321	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	999	Open in IMG/M
3300018028\|Ga0184608_10451030	Not Available	554	Open in IMG/M
3300018051\|Ga0184620_10025562	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1510	Open in IMG/M
3300018051\|Ga0184620_10081236	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	971	Open in IMG/M
3300018078\|Ga0184612_10002718	All Organisms → cellular organisms → Bacteria	8721	Open in IMG/M
3300018081\|Ga0184625_10207010	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1028	Open in IMG/M
3300018466\|Ga0190268_11513427	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	584	Open in IMG/M
3300018466\|Ga0190268_11523509	All Organisms → cellular organisms → Bacteria → Terrabacteria group	583	Open in IMG/M
3300018469\|Ga0190270_10104574	Not Available	2179	Open in IMG/M
3300018476\|Ga0190274_11863082	All Organisms → cellular organisms → Bacteria → Terrabacteria group	697	Open in IMG/M
3300018476\|Ga0190274_12845368	Not Available	580	Open in IMG/M
3300018476\|Ga0190274_13150014	Not Available	555	Open in IMG/M
3300018476\|Ga0190274_13831101	All Organisms → cellular organisms → Bacteria → Terrabacteria group	509	Open in IMG/M
3300018481\|Ga0190271_12512766	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	617	Open in IMG/M
3300019377\|Ga0190264_10314759	Not Available	958	Open in IMG/M
3300019767\|Ga0190267_11351601	All Organisms → cellular organisms → Bacteria → Terrabacteria group	536	Open in IMG/M
3300019767\|Ga0190267_11640734	All Organisms → cellular organisms → Bacteria → Terrabacteria group	505	Open in IMG/M
3300019867\|Ga0193704_1040162	Not Available	933	Open in IMG/M
3300021510\|Ga0222621_1134661	All Organisms → cellular organisms → Bacteria → Terrabacteria group	526	Open in IMG/M
3300022534\|Ga0224452_1064842	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1097	Open in IMG/M
3300022694\|Ga0222623_10174280	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	836	Open in IMG/M
3300022756\|Ga0222622_10365198	Not Available	1009	Open in IMG/M
3300022756\|Ga0222622_10973115	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	623	Open in IMG/M
3300026696\|Ga0208476_100300	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	978	Open in IMG/M
3300026706\|Ga0207925_100343	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	753	Open in IMG/M
3300026708\|Ga0208712_100337	All Organisms → cellular organisms → Bacteria	1420	Open in IMG/M
3300027056\|Ga0209879_1012635	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1377	Open in IMG/M
3300027056\|Ga0209879_1053956	All Organisms → cellular organisms → Bacteria → Terrabacteria group	650	Open in IMG/M
3300027577\|Ga0209874_1047485	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1123	Open in IMG/M
3300027577\|Ga0209874_1054050	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1034	Open in IMG/M
3300027954\|Ga0209859_1004637	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3030	Open in IMG/M
3300028704\|Ga0307321_1101303	All Organisms → cellular organisms → Bacteria → Terrabacteria group	585	Open in IMG/M
3300028709\|Ga0307279_10037881	Not Available	745	Open in IMG/M
3300028711\|Ga0307293_10110506	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	873	Open in IMG/M
3300028716\|Ga0307311_10038541	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1248	Open in IMG/M
3300028717\|Ga0307298_10175359	All Organisms → cellular organisms → Bacteria → Terrabacteria group	627	Open in IMG/M
3300028719\|Ga0307301_10154861	Not Available	738	Open in IMG/M
3300028719\|Ga0307301_10169421	Not Available	705	Open in IMG/M
3300028721\|Ga0307315_10276560	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	530	Open in IMG/M
3300028744\|Ga0307318_10030942	Not Available	1743	Open in IMG/M
3300028744\|Ga0307318_10118053	All Organisms → cellular organisms → Bacteria → Terrabacteria group	903	Open in IMG/M
3300028754\|Ga0307297_10247382	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	634	Open in IMG/M
3300028771\|Ga0307320_10122885	All Organisms → cellular organisms → Bacteria → Terrabacteria group	995	Open in IMG/M
3300028771\|Ga0307320_10399488	All Organisms → cellular organisms → Bacteria	551	Open in IMG/M
3300028793\|Ga0307299_10329161	All Organisms → cellular organisms → Bacteria → Terrabacteria group	573	Open in IMG/M
3300028814\|Ga0307302_10351038	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	727	Open in IMG/M
3300028814\|Ga0307302_10417124	All Organisms → cellular organisms → Bacteria → Terrabacteria group	664	Open in IMG/M
3300028819\|Ga0307296_10754937	All Organisms → cellular organisms → Bacteria	531	Open in IMG/M
3300028872\|Ga0307314_10041382	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1131	Open in IMG/M
3300028875\|Ga0307289_10370448	All Organisms → cellular organisms → Bacteria	589	Open in IMG/M
3300028876\|Ga0307286_10392331	All Organisms → cellular organisms → Bacteria	520	Open in IMG/M
3300028876\|Ga0307286_10420601	Not Available	503	Open in IMG/M
3300028878\|Ga0307278_10402917	All Organisms → cellular organisms → Bacteria	601	Open in IMG/M
3300028880\|Ga0307300_10019479	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1782	Open in IMG/M
3300028880\|Ga0307300_10244481	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	593	Open in IMG/M
3300028880\|Ga0307300_10356434	Not Available	505	Open in IMG/M
3300028889\|Ga0247827_10570666	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	719	Open in IMG/M
3300030336\|Ga0247826_10284460	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1177	Open in IMG/M
3300031228\|Ga0299914_10872609	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	744	Open in IMG/M
3300031228\|Ga0299914_11519332	Not Available	521	Open in IMG/M
3300031229\|Ga0299913_11411579	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	651	Open in IMG/M
3300031421\|Ga0308194_10356801	Not Available	522	Open in IMG/M
3300031731\|Ga0307405_10579188	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	913	Open in IMG/M
3300031824\|Ga0307413_10305483	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1208	Open in IMG/M
3300031852\|Ga0307410_10555698	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	952	Open in IMG/M
3300031901\|Ga0307406_10996550	All Organisms → cellular organisms → Bacteria → Terrabacteria group	718	Open in IMG/M
3300031995\|Ga0307409_102516421	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	543	Open in IMG/M
3300031995\|Ga0307409_102671699	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	527	Open in IMG/M
3300032002\|Ga0307416_100359212	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes → Actinoplanes digitatis	1478	Open in IMG/M
3300032002\|Ga0307416_102447119	All Organisms → cellular organisms → Bacteria → Terrabacteria group	621	Open in IMG/M
3300032005\|Ga0307411_11857840	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	560	Open in IMG/M
3300032126\|Ga0307415_101622117	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	622	Open in IMG/M
3300033551\|Ga0247830_11636436	Not Available	516	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	78.64%
Host-Associated	Host-Associated	21.36%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	66.99%
Plants	Host-Associated → Plants	21.36%
Aquatic	Environmental → Aquatic	11.65%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	65.05%
Rhizosphere	Host-Associated → Plants → Rhizosphere	17.48%
Sediment	Environmental → Aquatic → Sediment	10.68%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.88%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	1.94%
Freshwater	Environmental → Aquatic → Freshwater	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	50.49%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	17.48%
Sand	Environmental → Terrestrial → Soil → Sand	11.65%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	10.68%
Loam	Environmental → Terrestrial → Soil → Loam	2.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.91%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	1.94%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.97%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	41.75%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	17.48%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	11.65%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	10.68%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.91%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	2.91%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.91%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.94%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	1.94%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.97%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.97%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	37.86%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	11.65%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	9.71%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	4.85%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	4.85%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.85%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	2.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	2.91%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.91%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.94%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	1.94%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.94%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.97%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.97%
Terrestrial	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial	0.97%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.97%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.97%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000858	Soil microbial communities from Great Prairies - Wisconsin Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009157	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009797	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_10_20	Environmental	Open in IMG/M
3300009803	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_40_50	Environmental	Open in IMG/M
3300009810	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_20_30	Environmental	Open in IMG/M
3300009816	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_0_10	Environmental	Open in IMG/M
3300009820	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_50_60	Environmental	Open in IMG/M
3300009821	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_20_30	Environmental	Open in IMG/M
3300009837	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_20_30	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300012021	Terrestrial microbial communites from a soil warming plot in Okalahoma, USA - T1	Environmental	Open in IMG/M
3300012159	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT500_2	Environmental	Open in IMG/M
3300012939	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t1i015	Environmental	Open in IMG/M
3300014497	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018051	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1	Environmental	Open in IMG/M
3300018078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coex	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300019867	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3m1	Environmental	Open in IMG/M
3300021510	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_coex	Environmental	Open in IMG/M
3300022534	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1	Environmental	Open in IMG/M
3300022694	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coex	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300026696	Grasslands soil microbial communities from Gorham, Kansas, USA that are Nitrogen fertilized - NN630 (SPAdes)	Environmental	Open in IMG/M
3300026706	Grasslands soil microbial communities from Gorham, Kansas, USA that are Nitrogen fertilized - NN624 (SPAdes)	Environmental	Open in IMG/M
3300026708	Grasslands soil microbial communities from Gorham, Kansas, USA that are Nitrogen fertilized -NN628 (SPAdes)	Environmental	Open in IMG/M
3300027056	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_20_30 (SPAdes)	Environmental	Open in IMG/M
3300027577	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_20_30 (SPAdes)	Environmental	Open in IMG/M
3300027954	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_50_60 (SPAdes)	Environmental	Open in IMG/M
3300028704	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_379	Environmental	Open in IMG/M
3300028709	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_118	Environmental	Open in IMG/M
3300028711	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150	Environmental	Open in IMG/M
3300028716	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_198	Environmental	Open in IMG/M
3300028717	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_158	Environmental	Open in IMG/M
3300028719	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_182	Environmental	Open in IMG/M
3300028721	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_355	Environmental	Open in IMG/M
3300028744	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_367	Environmental	Open in IMG/M
3300028754	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_157	Environmental	Open in IMG/M
3300028771	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028872	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_204	Environmental	Open in IMG/M
3300028875	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143	Environmental	Open in IMG/M
3300028876	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300028880	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_181	Environmental	Open in IMG/M
3300028889	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2	Environmental	Open in IMG/M
3300030336	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1	Environmental	Open in IMG/M
3300031228	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT153D57	Environmental	Open in IMG/M
3300031229	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT155D38	Environmental	Open in IMG/M
3300031421	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_195 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated	Open in IMG/M
3300031901	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2	Host-Associated	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032005	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1	Host-Associated	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10213J12805_107881231	3300000858	Soil	RRWTLGGIVLGTLELALGALLLLTSGVDSDLLVPIVAAWGAVSGILLLAQGLRLRRFARTWRQAPGTPPQDR*
JGI10216J12902_1025856901	3300000956	Soil	VFVGLLGISAVLTGLLRILGGFAAEERLGHRWTLGGIVLGTLEVALGTLLLLTSGIDADLLVPIAAAWGAVSGILLLAQGLRLRRFARTWPHASGTPTQDP*
Ga0068861_1006269271	3300005719	Switchgrass Rhizosphere	GGFAAEERLGRRWTLGGIVLGTLELGVGALLLLTREVDPDLLVPIGAAWGAVSGTLLLAQGLRLRRVAHTWQASGTPPHDL*
Ga0075421_1011540462	3300006845	Populus Rhizosphere	LGALEVALGALLLLTREVDPDLLVPIAAAWGAVSGILLLAQGLRLRRFARTQRQALGTPPQGPSRD*
Ga0075430_1008051431	3300006846	Populus Rhizosphere	RRWTLGGIVLGALEVALGALLLLTREVDPDLLVPIAAAWGAVSGILLLAQGLRLRRVASTWQALGTPPHDL*
Ga0075433_106655902	3300006852	Populus Rhizosphere	TGLLRILGGFAAEERLGRRWTLGWIVLGTLEVAVGALLLLTSEVNPGLLGPIVAAWGAVSGILLLAQGLRLRRFARTWRQAPGTPPQDP*
Ga0075429_1005031223	3300006880	Populus Rhizosphere	LGGFAAEERLGRRWTLGGIVLGTLELGLGALLLVTRGVDPDLLVPIGAAWGAVSGILLLAQGLRLRRVASTWQALGTPPHDL*
Ga0079215_107311451	3300006894	Agricultural Soil	MQEAHRLGAVGSSTPTCSSGLLGISAVLTGLLRILGGFAAEERVGRRWSLGGIVLGTLELALGALLLLTSEVDPDLLVPIGAAWGAVSGILLLAQGLRLRRVARTWRQALGG
Ga0105245_127859921	3300009098	Miscanthus Rhizosphere	WTLGGVVLGGLEIALGALLLLTGKVDSGLLAPIAVAWGVVSGTLLLAQGLRLRRFAHSWQPAVKG*
Ga0111538_109575941	3300009156	Populus Rhizosphere	LEVAVGALLLLTSEVNPGLLGPIVAAWGAVSGILLLAQGLRLRRFARTWRQAPGTPPQDP
Ga0105092_100974974	3300009157	Freshwater Sediment	LVDPGVLIGLLGISAVLTGLLRILGGFAAEERLGRRWTLGGIVLGTLEVALGVLLLLTSEVDPGQLAPIAAAWGAVSGTLLLAQGLRLRRFARTWQASGPPPQNP*
Ga0105080_10126161	3300009797	Groundwater Sand	AEERLGRRWTLGGIVLGTLEFGLGALLLLTSEVDPDLLVPIVAAWGAVSGILLLAQGLRLRRFARTWRQASRTAPQDL*
Ga0105065_10211481	3300009803	Groundwater Sand	EERVGRRWTLGGIVLGTLELGLGALLLLTSEVDPDLLVPIGAAWGTVSGILLLAQGLRLRRFARTWRQASGGRGMRG*
Ga0105088_10088664	3300009810	Groundwater Sand	GLGVLLLLTSEVDPDLLVPIVAAWGAVSGILLLAQGLRLRRFARTWRQASRTAPQDL*
Ga0105076_10002185	3300009816	Groundwater Sand	VFVGLLGISAVLTGLLRILGGFAAEERLGRRWTLGGIVLGTLEVALGALLLLTSEVDPDLLAPLVAAWGAVSGTLLLTQGLRLRRFARTWR*
Ga0105085_10308021	3300009820	Groundwater Sand	LLGISAVLTGLLRILGGFAAEERLGRRWTLGGIVLGTLEVALGALLLLTSEVDPDLLAPLVAAWGAVSGTLLLTQGLRLRRFARTWR*
Ga0105064_10660822	3300009821	Groundwater Sand	WTLGGLVLGTLELGLGALLLLTREVDPDLLVPIGAAWGAVSGILLLAQGLRLRRFARTWRQASGAAPQDP*
Ga0105058_10535352	3300009837	Groundwater Sand	LGGFAAEERLGRRWTVGGIVLGALEVALGALLLLTSEVDPGLLVPIGAAWGAVSGILLLAQGLGLRRFARTWRQASGTPPQGP*
Ga0126313_108564313	3300009840	Serpentine Soil	LLRILGGFAAEERLGRRWTLGGIVLGTLEVALGALLLLTSELDPGLLVPIVAAWGAVSGILLLAEGWRLRRFARTWRQAQGTPPQAV*
Ga0126305_105007191	3300010036	Serpentine Soil	GVLRIFGGFAAEDRVGRRWTLGGIVLGTLELALGALLLLTSGVAPELLVPIVAAWGAVSGILLLAQGLRLRRSARTWRQAPGTPPQDR*
Ga0126308_111215922	3300010040	Serpentine Soil	PEVLIELLGFSAGLTGLLRVVGGFATQERFGRRWTIGGIVLGTLELAFGILLLLTSHVDPDLLLPIAATWGTVSGTLLLAEGLRLRRFARTWPPPAPETLT*
Ga0120192_101502441	3300012021	Terrestrial	IVLGTLELGLGALLLLTREVDPDLLVPIGAAWGAVSGILLLAQGLRLRRVARSWQASGTPPQDP*
Ga0137344_10769022	3300012159	Soil	SALLTGLLRILGGFAAEERLGRRWTIGGVLLGTLELGLGALLLLTSGVDPDLLVPITAAWGAVSGILLLAQGLRLRRVAHTWRQASGGRGMRG*
Ga0162650_1000463162	3300012939	Soil	AEERVGRRWTLGGIVLGTLELGLGALLLLTREVDPDLLVPIGAAWGAVSGILLLAQGLRLRRVARTWRQASGGRGMRG*
Ga0162650_1000533063	3300012939	Soil	LLRILGGFAAEERLGRRWTLGGIVLGTLELGLGALLLLTREVDPDLLVPIGAAWGAVSGILLLTQGLGLRRMAHTWRQPSGTPPHDP*
Ga0182008_101497922	3300014497	Rhizosphere	VFIVLLGIPAVLTGLLRILGGFAFQERLGRRWTLGGIVLGTLELGLGALLLLTREVDPDLLVPIGAAWGAVSGILLLAQGLGLRRVARTWRQASGGRGMRG*
Ga0182008_106069731	3300014497	Rhizosphere	GISAVLTGLLRVLGGFAAEERVGRRWTLGGIVLGTLELGLGALLLLTREVDPDLLVPIGAAWGAVSGILLLARGLRLRRVARTWRQASGGRGMRG*
Ga0132258_103145084	3300015371	Arabidopsis Rhizosphere	VVDPNVFVGLLGISAVLTGVLRSWAGSLLSSGWDAAGPWGGIVLGTLEVALGVLLLLTRGVDADLLVPIGAAWGAVSGILLLAQGLGLRRVARSWRPASGTPPQAP*
Ga0132257_1001018395	3300015373	Arabidopsis Rhizosphere	LEVALGVLLLLTRGVDADLLVPIGAAWGAVSGILLLAQGLGLRRVARSWRPASGTPPQAP
Ga0132255_1012898612	3300015374	Arabidopsis Rhizosphere	VALGVLLLLTRGVDADLLVPIGAAWGAVSGILLLAQGLGLRRVARSWRPASGTPPQAP*
Ga0190266_101733212	3300017965	Soil	WTLGGIVLGTLELGLGVLLLLTREVDPGLLVPIGAAWGAVSGILLLAQGLGLRRVAHTWRQASATPPQDL
Ga0184608_104510301	3300018028	Groundwater Sediment	RLLSISAALTCLLRILGGFAAEERVGRRWTLVGIVLGTLELALGALLLLTREVDPDLLVPIGAAWGAVSGILLLAQGLRLRRFARTWQASQAALHGRGSTGAG
Ga0184620_100255623	3300018051	Groundwater Sediment	RILGGFAAEERLGRRWTLGGIVLGTLEVALGVLLLLTRGVDADLLVPIGAAWGTVSGILLLAQGLGLRRMARTWRQASGAPPQDP
Ga0184620_100812361	3300018051	Groundwater Sediment	PDVFVGLLGVSAVLTGLLRILGGFAAEERVGRRWTLGGMVLGTLELGLGALLLLTREVDPDLLVPIGAAWGAVSGILLLAQGLGLRRVARTWRQASGTPSQDL
Ga0184612_1000271810	3300018078	Groundwater Sediment	VLTGLLRILGGFAAEERVGRRWTLGGIVLGTLELGLGALLLLTREVDPDLLVPIGAAWGAVSGILLLAQGLRLRRFARTWRQASGAAPQDP
Ga0184625_102070101	3300018081	Groundwater Sediment	RVLGGFAAEERVGRRWTLGGIVLGTLELALGALLLLTREMDPGLLVPIVAAWGAVSGILLLAQGLRLRRFARHWRQASGTSPQDR
Ga0190268_115134271	3300018466	Soil	GLLGISAVLTGMLRVLGGFAAEERVGRRWTLGGIVLGTLELGLGALLLLTREVDPDLLVPIGAAWGAVSGILLLAQGLGLRRVARSWRQASGTPPQDP
Ga0190268_115235092	3300018466	Soil	TGVLRIFGGFAAEERVGRRWTLGGIVLGTLELALGALLLLTSGVAPELLVPIVAAWGAVSGILLLAQGLRLRRFARTWRQAPGTPPQDR
Ga0190270_101045743	3300018469	Soil	VLGTLEVALGVLLLLTSEVDPGQLAPIAAAWGAVSGTLLLAQGLRLRRFARTWQASGPPPQNP
Ga0190274_118630822	3300018476	Soil	VLIGLLGVSAVLTGLLRMLGGFAAEERLGRRWTLGGIVLGTLEVTLGVLLLLTSEVEPGLLAPIAAAWGAVSGTLLLAQGLGLRRFARARQVSGTPPQDM
Ga0190274_128453682	3300018476	Soil	ELGLGALLLLTREVDPDLLVPIGAAWGAVSGILLLAQGLRLRRVARTWRQASGTPPQDP
Ga0190274_131500142	3300018476	Soil	AAEERLGRRWTLGGFVLGTLEVALGALLLLTSEVDPELLAPIAAAWGAVSGTLLLVQGLRLRRFARTWQASGPPQDPQPAA
Ga0190274_138311011	3300018476	Soil	LGALLLLTSGVAPELLVPIVAAWGAVSGILLLAQGLRLRRFARTWRQAPGTPPQDR
Ga0190271_125127662	3300018481	Soil	WTLGGIVLGTLELGLGALLLVTREVDPDLLVPIGAAWGAVSGILLLAQGLGLRRVARSWRQASGGRGMRG
Ga0190264_103147592	3300019377	Soil	VGRRWTLGGIVLGTLELGLGALLLLTREVDPDLLVPIGAAGGAVSGILLLAQGLGLRRVARTWQASQASLHGRGPTGTG
Ga0190267_113516012	3300019767	Soil	GGFAAEERLGRRWTLGGIVLGTLEVGLGALLLLTSGVDPDLLAPIVAAWGAVSGILLLAQGLQLRRVARSWRQASGTPPQDP
Ga0190267_116407341	3300019767	Soil	GVVDPDLFVRLLGISAALTGLLRILGGFAAEEQVGRRWTLGGIVLGTLELGLGVLLLVTSEVDPDLLVPIGAAWGTVSGTLLLAQGLRLRRVAHSWQQASGTPPQDP
Ga0193704_10401622	3300019867	Soil	SAVLTGLLRILGGFAAEERLGRRWTLGGIVLGTLELGLGALLLVTSEVDPDLLVPFGAAWGAVSGILLLAQGLRLRRVARTWRQASGTPPQDL
Ga0222621_11346611	3300021510	Groundwater Sediment	WTLGGIVLGTLELGLGALLLLTREVDPDLLVPIGAVWGAVSGILLLAQGLGLRRVARTWRQASGTPSQDL
Ga0224452_10648421	3300022534	Groundwater Sediment	RVLGGFAAEERLGRRWTLGGIVLGTLEVGLGALLLLTSGVDPDLLAPIVAAWGAVSGILLLAQGLQLRRVALSWRQASGTPPQDP
Ga0222623_101742801	3300022694	Groundwater Sediment	LRILGGFAAEERVGRRWTLGGIVLGTLELGLGALLLLTREVDPDLLVPIGAAWGAVSGILLLAQGLGLRRVARTWRQASATPPHDR
Ga0222622_103651981	3300022756	Groundwater Sediment	VLTGLLRVLGGFAAEERVGRRWTLGGIVLGTLELGLGALLLVTSEVDPDLLVPFGAAWGAVSGILLLAQGLRLRRVARTWRQASGTPPQDL
Ga0222622_109731151	3300022756	Groundwater Sediment	AIVLGTLELGLGVLLLLTNEVDPDLLVPIVAAWGAVSGTLLLAEGLRLHHFARTWRASDAAPHSRGPASNGRTG
Ga0208476_1003001	3300026696	Soil	VLGTLELGLGALLLLTREVDPDLLVPIGAAWGAVSGILLLAQGLGLRHVARTWRQASGGRGMRG
Ga0207925_1003432	3300026706	Soil	RRWTLGGIVLGTLELGLGALLLLTREVNPGLLVPIGAAWGAVSGILLLAQGLGLRHVARTWRQASGGRGMRG
Ga0208712_1003373	3300026708	Soil	AVLTGLLRVLGGFAAEERVGRRWTLGGIVLGTLELGLGALLLLTREVNPGLLVPIGAAWGAVSGILLLAQGLGLRRVARTWRQASGGRGMRG
Ga0209879_10126352	3300027056	Groundwater Sand	RLSGLVAPAVFVGLLGISAVLTGLLRILGGFAAEERLGRRWTLGGIVLGTLEVALGALLLLTSEVDPDLLAPLVAAWGAVSGTLLLTQGLRLRRFARTWR
Ga0209879_10539561	3300027056	Groundwater Sand	EERVGRRWTLGGLVLGTLELGLGALLLLTREVDPDLLVPIGAAWGAVSGILLLAQGLRLRRFARTWRQASGAAPQDP
Ga0209874_10474853	3300027577	Groundwater Sand	LGRRWTLGGIVLGALEVALGALLLLTSEVDPGLLVPIGAAWGAVSGILLLAQGLRLRRFARTWRQASGAAPQDP
Ga0209874_10540501	3300027577	Groundwater Sand	SAVLTGLLRILGGFAAEERLGRRWTLGGIVLGTLEVALGALLLLTNQVDPDLLVPIAAAWGAVSGILLLAQGLRLRRLARTWKASGTPPQDP
Ga0209859_10046374	3300027954	Groundwater Sand	LGGIVLGTLEVALGALLLLTSEVDPDLLAPLVAAWGAVSGTLLLTQGLRLRRFARTWR
Ga0307321_11013031	3300028704	Soil	ELGLGALLLLTREVDPDLLVPIGAAWGAVSGILLLAQGLRLRRVARTWRQASGTPTQDP
Ga0307279_100378811	3300028709	Soil	VGRRWTLGGIALGTLELALGALLLLTREVDPDLLVPMGAAWAAVSGILLLAQGLRLRRFARTWQASQAALHGRGSTGAG
Ga0307293_101105062	3300028711	Soil	TGLLRILGGFAAEERVGRRWTLGGIVLGTLELGLGALLLLTREVDPDLLVPIGAVWGAVSGILLLAQGLGLRRVARTWRQASGTPSQDL
Ga0307311_100385411	3300028716	Soil	ISGVVDPDVFVGLLGISAVLTGLLRILGGFAAEERVGRRWTLGGIVLGTLELGLGALLLVTSEVDPDLLVPFGAAWGAVSGILLLAQGLRLRRVARTWRQASGTPPQDL
Ga0307298_101753591	3300028717	Soil	DPNVFVGLLGISAVLTGLLRILGGFAAEERVGRRWTLGGMVLGTLELGLGALLLLTREVDPDLLVPIGAAWGAVSGILLLAQGLRLRRVARTWRQASGTPTQDP
Ga0307301_101548611	3300028719	Soil	LAAAIAAVVGAVLVLLATGSPGSWTRMCSSGCWAISAVLTGLLRILGGFAAEERVGRRWTLGGIALGTLELALGALLLAQGLRLRRFARTWQASQAALHGRGSTGAG
Ga0307301_101694211	3300028719	Soil	VFVGLLGISAVLTGLLRILGGFAAEERVGRRWTLGGIVLGTLELGLGALLLLTREVDPDLLVPIGAAWGAVSGIVLLAQGLGLRRVASAWQVLGTPP
Ga0307315_102765601	3300028721	Soil	ERVGRRWTLGGIVLGTLELGLGALLLLTREVDPDLLVPIGAAWGAVSGILLLAQGLRLRRMARTWRQASGGRGMRG
Ga0307318_100309421	3300028744	Soil	AAEERLGRRWTLGGIVLGTLELALGALLLLTSEVDPDLLVPIGAAWGAVSGILLLAQGLRLRRFARTWQASQAALYGRGPTGIG
Ga0307318_101180533	3300028744	Soil	PEVFVGVLGISAVLTGLLRVLGGFAAEERLGRRWTLGGIVLGTLEVGLGALLLLTSGVDPDLLAPIVAAWGAVSGILLLAQGLQLRRVALSWRQASGTPPQDP
Ga0307297_102473822	3300028754	Soil	RWTLGGIVLGTLELALGALLLLTREVDPDLLVPIGAAWGAVSGILLLAQGLRLRRMARTWRQASGGRGMRE
Ga0307320_101228852	3300028771	Soil	ELGLGALLLVTSDVDPDLLQPSGVAWAAVSGILLLAQGLRLRRFARTWRQASGTAPQDP
Ga0307320_103994881	3300028771	Soil	LRILGGFAAEERVGRRWTLGGIVLGTLELGLGALLLLTREVDPDLLVPIGAVWGAVSGILLLAQGLGLRRVARTWRQASGTPSQDL
Ga0307299_103291611	3300028793	Soil	LGGIVLGTLELGLGALLLLTREVDPDLLVPIGAVWGAVSGILLLAQGLGLRRVARTWRQASGTPSQDL
Ga0307302_103510382	3300028814	Soil	GISAVLTGLLRILGGFAAEERLGRRWTLGGIVLGTLELALGALLLLTSEVDPDLLVPIGAAWGAVSGILLLAQGLRLRRFARTWQASQAALYGRGPTGIG
Ga0307302_104171242	3300028814	Soil	AVLTGVLRILGGFAAEERVGRRWTLGGLVLGTLELGLGALLLLTREVDPDLLVPIGAAWGAVSGILLLAQGLRLRRFARTWRQASGAAPQDP
Ga0307296_107549371	3300028819	Soil	LLRILGGFAAEERLGRRWTLGGIVLGTLELGLGALLLVTRGVDPDLLVPIGAAWGAVSGILLLAQGLRLRRFARTWQASQASHG
Ga0307314_100413823	3300028872	Soil	AVLTGLLRILGGFAAEERVGRRWTLGGIALGTLELALGALLLLTREVDPDLLVPMGAAWAAVSGILLLAQGLRLRRFARTWQASQAALHGRGSTGAG
Ga0307289_103704481	3300028875	Soil	LTGLLRILGGFAAEERLGRRWTLGGIVLGTLELGLGALLLLTREVDPDLLVPIGAAWGAVSGILLLAQGLRLRRFARTWQASQAALYGRGPTGIG
Ga0307286_103923311	3300028876	Soil	IVLGTLELGLGALLLLTREVDPDLLVPIGAAWGAVSGILLLAQGLGLRRVARTWRQASATPPHDR
Ga0307286_104206012	3300028876	Soil	EERVGRRWTLGGIVLGTLELGLGALLLVTREVDPDLLVPIGAAWGSVSGILLLAQGLRLRRFARTWQASQASLHGRGPTGIG
Ga0307278_104029172	3300028878	Soil	VAFGVLLLLTSEVDPRLLAPIAAAWGAVSGTLLLAQGLRLRRYARNWQAQGSSPHPP
Ga0307300_100194793	3300028880	Soil	FAAEERLGRRWTLGGIVIGMLEVGLGALLLLGEEVDPDLLAPIVVAWGVASGSLLVAEGLRLHRFARSWQTSGTTPQDP
Ga0307300_102444812	3300028880	Soil	ERLSGVVDPNVFVGLLGISAVLTGLLRILGGFAAEERLGRRWTLGGIVLGTLELALGALLLLTREVDPDLLVPIGAAWGAVSGILLLAQGLRLRRMARTWRQASGGRGMRG
Ga0307300_103564341	3300028880	Soil	GIVLGTLELGLGALLLVTSEVDPDLLVPFGAAWGAVSGILLLAQGLRLRRVARTWRQASGTPPQDL
Ga0247827_105706662	3300028889	Soil	VLGALEVALGALLLLTREVDPDLLVPIAAAWGAVSGILLLAQGLRLRRFARTQRQALGTPPQGPSRD
Ga0247826_102844601	3300030336	Soil	VGVLGISAVLTGLLRILGGFAAEERLGRRWTLGGIVLGTLEVGLGALLLLTSGVDPDLLAPIVAAWGAVSGILLLAQGLQLRRVARSWRQASGTPPQDP
Ga0299914_108726092	3300031228	Soil	SAVLTGLLRILGGFAAEERLGRRWTLGGIALGTLELGLGALLLTSGVEPDLLVPIVAAWGAVSGTLLLAQGLRLRRLTRN
Ga0299914_115193321	3300031228	Soil	RRWTLGGIVLGTLEVALGVLLLLTSEVDPGQLAPIAAAWGAVSGTLLLAQGLRLRRFARTWQASGPPPQNP
Ga0299913_114115792	3300031229	Soil	DPDVFVGLLGISAVLTGLLRILGGFAAEERLGRRWTLGGIALGTLELGLGALLLTSGVEPDLLVPIVAAWGAVSGTLLLAQGLRLRRLTRN
Ga0308194_103568011	3300031421	Soil	TGLLRILGGFAAEERVGRRSTLGGIALGTLELALGALLLLTREVDPDLLVPMGAAWAAVSGILLLAQGLRLRRFARTWQASQAALHGRGSTGIG
Ga0307405_105791882	3300031731	Rhizosphere	GTLELGLGALLLLTREVDPDLLVPIGAAWGAVSGILLLAQGLGLRRVARTWRQASGTPTRDL
Ga0307413_103054833	3300031824	Rhizosphere	DRVGRRWTLGGIVLGTLELALGALLLLTSGVAPELLVPIVAAWGAVSGILLLAQGLRLRRFARTWRQAPGTPPQDR
Ga0307410_105556981	3300031852	Rhizosphere	GRRWTLGGIVLGTLELGLGALLLLTREVDPDLLVPIGAAWGAVSGILLLAQGLRLRRFARTWQASGTSPHDP
Ga0307406_109965501	3300031901	Rhizosphere	EERVGRHWTLGGIVLGTLELALGALLLLTSGVAPELLVPIVAAWGAVSGILLLAQGLRLRRFARTWRQAPGTPPQDR
Ga0307409_1025164212	3300031995	Rhizosphere	LRILGGFAAEERVGRRWTLGGIVLGTLELGLGALLLLTREVDPDLLVPIGAAWGAVSGILLLAQGLGLRRVARTWRQASGTPTRDL
Ga0307409_1026716991	3300031995	Rhizosphere	VLRVFGGFAAEERLGRRWTLGGIVLGTLEVALGALLLLTSELDPGLLVPIVAAWGAVSGILLLAEGWRLRRFARTWRQAQGTPPQAL
Ga0307416_1003592122	3300032002	Rhizosphere	GGGRGGCAAEARLGRRWTLGAIVLGTLEVALGALLLLTSEVDPGRLASVVAAWGAVSGILLLAQGLRLRRVARSWQPSGRSPRDP
Ga0307416_1024471191	3300032002	Rhizosphere	LLGISAVLTGLLRIVGGFAAEERVGRRWTLGGIVLGTLELGLGALLLVTSEVEPDLLVPIGAAWGAVSGILLLAQGLGLRRVARSWRQASGTPPQDP
Ga0307411_118578402	3300032005	Rhizosphere	SAVLTGLLRILGGFAAEERVGRRWTLGGIVLGTLELGLGALLLLTREVDPDLLVPIGAAWGAVSGILLLAQGLGLRRVARTWRQASGGRGMRVTYGGPEPPTSK
Ga0307415_1016221171	3300032126	Rhizosphere	VLTGVLRVFGGFAAEERLGRRWTLGGIVLGTLEVALGALLLLTSELDPGLLVPIVAAWGAVSGILLLAEGWRLRRFARTWRQAQGTPPQAL
Ga0247830_116364361	3300033551	Soil	LGGFAAEERLGRRWTLGGIVLGTLELGLGALLLVTRGVDPDLLVPIGAAWGAVSGILLLAQGLRLRRVAHTWQASGTPPHDL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F098847

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences