Metagenome / Metatranscriptome Family F054649

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F054649
Family Type	Metagenome / Metatranscriptome
Number of Sequences	139
Average Sequence Length	90 residues
Representative Sequence	LSYCPRSSLPAHALAWLADRLAHLHPARPPGQGGTPPLSLEVRLDAVAAVILDGLSYRRAGRAVGISKTEVGDSLDLLLGPLAALGYCQP
Number of Associated Samples	90
Number of Associated Scaffolds	139

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	69.78 %
% of genes near scaffold ends (potentially truncated)	92.81 %
% of genes from short scaffolds (< 2000 bps)	89.93 %
Associated GOLD sequencing projects	86
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.77

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (61.151 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (28.777 % of family members)
Environment Ontology (ENVO)	Unclassified (39.568 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (34.532 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 42.37% β-sheet: 0.00% Coil/Unstructured: 57.63%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.77
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.77
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SCOP family	SCOP domain	Representative PDB	TM-score
a.74.1.2: Transcription factor IIB (TFIIB), core domain	d1c9ba1	1c9b	0.64358
a.74.1.2: Transcription factor IIB (TFIIB), core domain	d1c9ba2	1c9b	0.63929
a.74.1.2: Transcription factor IIB (TFIIB), core domain	d1aisb2	1ais	0.63126
a.74.1.3: Retinoblastoma tumor suppressor domains	d1guxb_	1gux	0.62256
a.74.1.1: Cyclin	d1f5qb1	1f5q	0.61371

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 139 Family Scaffolds
PF13359	DDE_Tnp_4	2.88
PF00128	Alpha-amylase	2.16
PF05694	SBP56	2.16
PF07110	EthD	2.16
PF04672	Methyltransf_19	2.16
PF13602	ADH_zinc_N_2	1.44
PF05726	Pirin_C	0.72
PF04237	YjbR	0.72
PF00004	AAA	0.72
PF13384	HTH_23	0.72
PF00296	Bac_luciferase	0.72
PF01526	DDE_Tnp_Tn3	0.72
PF01345	DUF11	0.72
PF01872	RibD_C	0.72
PF12704	MacB_PCD	0.72
PF02687	FtsX	0.72
PF14136	DUF4303	0.72
PF12698	ABC2_membrane_3	0.72
PF12833	HTH_18	0.72
PF09685	DUF4870	0.72
PF01758	SBF	0.72
PF16927	HisKA_7TM	0.72
PF00005	ABC_tran	0.72
PF03992	ABM	0.72
PF00872	Transposase_mut	0.72
PF08327	AHSA1	0.72
PF06353	DUF1062	0.72
PF04972	BON	0.72
PF07992	Pyr_redox_2	0.72
PF00899	ThiF	0.72
PF07411	DUF1508	0.72
PF05598	DUF772	0.72
PF12680	SnoaL_2	0.72
PF08281	Sigma70_r4_2	0.72
PF13191	AAA_16	0.72

COG ID	Name	Functional Category	% Frequency in 139 Family Scaffolds
COG0296	1,4-alpha-glucan branching enzyme	Carbohydrate transport and metabolism [G]	2.16
COG0366	Glycosidase/amylase (phosphorylase)	Carbohydrate transport and metabolism [G]	2.16
COG1523	Pullulanase/glycogen debranching enzyme	Carbohydrate transport and metabolism [G]	2.16
COG3280	Maltooligosyltrehalose synthase	Carbohydrate transport and metabolism [G]	2.16
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	0.72
COG1741	Redox-sensitive bicupin YhaK, pirin superfamily	General function prediction only [R]	0.72
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	0.72
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.72
COG2315	Predicted DNA-binding protein with Ã¢â‚¬Ëœdouble-wingÃ¢â‚¬â„¢ structural motif, MmcQ/YjbR family	Transcription [K]	0.72
COG3328	Transposase (or an inactivated derivative)	Mobilome: prophages, transposons [X]	0.72
COG3422	Uncharacterized conserved protein YegP, UPF0339 family	Function unknown [S]	0.72
COG4332	Uncharacterized conserved protein, DUF1062 domain	Function unknown [S]	0.72
COG4644	Transposase and inactivated derivatives, TnpA family	Mobilome: prophages, transposons [X]	0.72

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.15 %
All Organisms	root	All Organisms	38.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.15 %
cellular organisms	root	All Organisms → cellular organisms	38.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.15 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	38.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.15 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	27.34 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.16 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.15 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	25.90 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2.16 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.15 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	18.71 %
Pseudomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales	2.16 %
Rubrobacteria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria	0.72 %
Acidimicrobiia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.15 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	3.60 %
Pseudomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae	2.16 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	1.44 %
Gaiellales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales	0.72 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.72 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.72 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.72 %
Acidimicrobiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	0.72 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.15 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	3.60 %
Pseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas	2.16 %
Kribbellaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae	1.44 %
unclassified Pseudonocardiales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales	0.72 %
Gaiellaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae	0.72 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.72 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → environmental samples	0.72 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.72 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.15 %
Pseudomonas fluorescens group	species group	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas fluorescens group	2.16 %
Kribbella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella	1.44 %
Actinoplanes	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes	1.44 %
uncultured Acidimicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → environmental samples → uncultured Acidimicrobiales bacterium	0.72 %
Gaiella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella	0.72 %
Pseudonocardiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	0.72 %
Asanoa	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Asanoa	0.72 %
Nonomuraea	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Nonomuraea	0.72 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.72 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.15 %
Pseudomonas fluorescens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas fluorescens group → Pseudomonas fluorescens	2.16 %
Kribbella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella	1.44 %
Streptomyces violaceusniger group	species group	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces violaceusniger group	0.72 %
Gaiella occulta	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → Gaiella occulta	0.72 %
Actinoplanes rishiriensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes → Actinoplanes rishiriensis	0.72 %
Nonomuraea basaltis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Nonomuraea → Nonomuraea basaltis	0.72 %
Actinoplanes aureus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes → Actinoplanes aureus	0.72 %
Asanoa ferruginea	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Asanoa → Asanoa ferruginea	0.72 %
uncultured Acidimicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → environmental samples → uncultured Acidimicrobiales bacterium	0.72 %
Pseudonocardiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	0.72 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.15 %
Pseudomonas fluorescens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas fluorescens group → Pseudomonas fluorescens	2.16 %
Kribbella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella	1.44 %
Streptomyces malaysiensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces violaceusniger group → Streptomyces malaysiensis	0.72 %
Gaiella occulta	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → Gaiella occulta	0.72 %
Actinoplanes rishiriensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes → Actinoplanes rishiriensis	0.72 %
Nonomuraea basaltis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Nonomuraea → Nonomuraea basaltis	0.72 %
Actinoplanes aureus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes → Actinoplanes aureus	0.72 %
Asanoa ferruginea	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Asanoa → Asanoa ferruginea	0.72 %
uncultured Acidimicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → environmental samples → uncultured Acidimicrobiales bacterium	0.72 %
Pseudonocardiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	0.72 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.72 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_110703074	Not Available	568	Open in IMG/M
3300000956\|JGI10216J12902_125299276	Not Available	1249	Open in IMG/M
3300004479\|Ga0062595_102581081	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	509	Open in IMG/M
3300005169\|Ga0066810_10100811	Not Available	639	Open in IMG/M
3300005562\|Ga0058697_10104826	Not Available	1177	Open in IMG/M
3300005562\|Ga0058697_10187385	Not Available	929	Open in IMG/M
3300005562\|Ga0058697_10489933	All Organisms → cellular organisms → Bacteria → Terrabacteria group	626	Open in IMG/M
3300005713\|Ga0066905_100462873	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → Gaiella occulta	1045	Open in IMG/M
3300006845\|Ga0075421_100836154	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes → Actinoplanes rishiriensis	1056	Open in IMG/M
3300006847\|Ga0075431_101438035	All Organisms → cellular organisms → Bacteria	649	Open in IMG/M
3300009809\|Ga0105089_1080219	Not Available	552	Open in IMG/M
3300009809\|Ga0105089_1107270	Not Available	503	Open in IMG/M
3300009814\|Ga0105082_1056892	All Organisms → cellular organisms → Bacteria	671	Open in IMG/M
3300009816\|Ga0105076_1075502	Not Available	632	Open in IMG/M
3300009836\|Ga0105068_1006388	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1857	Open in IMG/M
3300009836\|Ga0105068_1082229	Not Available	612	Open in IMG/M
3300009840\|Ga0126313_10153279	All Organisms → cellular organisms → Bacteria	1742	Open in IMG/M
3300009840\|Ga0126313_11548511	Not Available	551	Open in IMG/M
3300010038\|Ga0126315_10280527	All Organisms → cellular organisms → Bacteria	1024	Open in IMG/M
3300010038\|Ga0126315_10344173	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas fluorescens group → Pseudomonas fluorescens	928	Open in IMG/M
3300010041\|Ga0126312_10054822	Not Available	2674	Open in IMG/M
3300010041\|Ga0126312_10479879	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas fluorescens group → Pseudomonas fluorescens	888	Open in IMG/M
3300010041\|Ga0126312_10563068	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	818	Open in IMG/M
3300010041\|Ga0126312_11107791	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → environmental samples → uncultured Acidimicrobiales bacterium	582	Open in IMG/M
3300010042\|Ga0126314_10065888	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2394	Open in IMG/M
3300010042\|Ga0126314_11443876	Not Available	517	Open in IMG/M
3300010044\|Ga0126310_10022828	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3164	Open in IMG/M
3300010045\|Ga0126311_10677992	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	822	Open in IMG/M
3300010329\|Ga0134111_10388906	Not Available	595	Open in IMG/M
3300010333\|Ga0134080_10543879	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	558	Open in IMG/M
3300012201\|Ga0137365_10818754	Not Available	680	Open in IMG/M
3300012201\|Ga0137365_10919259	Not Available	638	Open in IMG/M
3300012204\|Ga0137374_10036600	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5266	Open in IMG/M
3300012204\|Ga0137374_10689887	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	768	Open in IMG/M
3300012204\|Ga0137374_10750222	Not Available	728	Open in IMG/M
3300012204\|Ga0137374_10784748	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces violaceusniger group → Streptomyces malaysiensis	708	Open in IMG/M
3300012204\|Ga0137374_10857613	Not Available	670	Open in IMG/M
3300012204\|Ga0137374_11263157	Not Available	512	Open in IMG/M
3300012206\|Ga0137380_10260930	Not Available	1560	Open in IMG/M
3300012206\|Ga0137380_10326529	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	1371	Open in IMG/M
3300012206\|Ga0137380_11275134	Not Available	620	Open in IMG/M
3300012207\|Ga0137381_11243014	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	638	Open in IMG/M
3300012209\|Ga0137379_10973203	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	753	Open in IMG/M
3300012210\|Ga0137378_10462947	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1173	Open in IMG/M
3300012211\|Ga0137377_11602668	Not Available	575	Open in IMG/M
3300012349\|Ga0137387_10237639	Not Available	1312	Open in IMG/M
3300012351\|Ga0137386_11080397	Not Available	567	Open in IMG/M
3300012351\|Ga0137386_11117339	Not Available	556	Open in IMG/M
3300012353\|Ga0137367_10730038	Not Available	689	Open in IMG/M
3300012353\|Ga0137367_10918323	Not Available	602	Open in IMG/M
3300012355\|Ga0137369_10993630	Not Available	557	Open in IMG/M
3300012355\|Ga0137369_11141349	Not Available	506	Open in IMG/M
3300012355\|Ga0137369_11142014	Not Available	506	Open in IMG/M
3300012356\|Ga0137371_10058630	All Organisms → cellular organisms → Bacteria	2981	Open in IMG/M
3300012356\|Ga0137371_10721053	All Organisms → cellular organisms → Bacteria	762	Open in IMG/M
3300012356\|Ga0137371_10748864	Not Available	746	Open in IMG/M
3300012357\|Ga0137384_10258535	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1452	Open in IMG/M
3300012358\|Ga0137368_10048730	Not Available	3615	Open in IMG/M
3300012358\|Ga0137368_10077029	All Organisms → cellular organisms → Bacteria	2675	Open in IMG/M
3300012358\|Ga0137368_10253986	Not Available	1213	Open in IMG/M
3300012360\|Ga0137375_10100376	All Organisms → cellular organisms → Bacteria	2949	Open in IMG/M
3300012360\|Ga0137375_10404050	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella	1193	Open in IMG/M
3300012360\|Ga0137375_10489100	Not Available	1050	Open in IMG/M
3300012360\|Ga0137375_10819669	Not Available	747	Open in IMG/M
3300012360\|Ga0137375_11209314	Not Available	578	Open in IMG/M
3300012532\|Ga0137373_10037313	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4650	Open in IMG/M
3300012532\|Ga0137373_10106936	Not Available	2432	Open in IMG/M
3300012532\|Ga0137373_10680392	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	769	Open in IMG/M
3300012532\|Ga0137373_10834051	Not Available	680	Open in IMG/M
3300012532\|Ga0137373_11038332	Not Available	591	Open in IMG/M
3300014487\|Ga0182000_10128659	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Nonomuraea → Nonomuraea basaltis	889	Open in IMG/M
3300015265\|Ga0182005_1192519	Not Available	610	Open in IMG/M
3300015359\|Ga0134085_10567956	Not Available	525	Open in IMG/M
3300017657\|Ga0134074_1170131	Not Available	766	Open in IMG/M
3300017657\|Ga0134074_1340416	Not Available	552	Open in IMG/M
3300018052\|Ga0184638_1068241	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	1301	Open in IMG/M
3300018053\|Ga0184626_10427361	Not Available	525	Open in IMG/M
3300018056\|Ga0184623_10058223	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1770	Open in IMG/M
3300018074\|Ga0184640_10116458	All Organisms → cellular organisms → Bacteria	1173	Open in IMG/M
3300018075\|Ga0184632_10465910	Not Available	522	Open in IMG/M
3300018078\|Ga0184612_10119979	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	1376	Open in IMG/M
3300018078\|Ga0184612_10239005	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes → Actinoplanes aureus	939	Open in IMG/M
3300018466\|Ga0190268_10118236	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1277	Open in IMG/M
3300019767\|Ga0190267_10659788	Not Available	663	Open in IMG/M
3300019767\|Ga0190267_10954460	Not Available	595	Open in IMG/M
3300021073\|Ga0210378_10259450	Not Available	657	Open in IMG/M
3300021073\|Ga0210378_10368471	Not Available	535	Open in IMG/M
3300021078\|Ga0210381_10112607	Not Available	894	Open in IMG/M
3300021951\|Ga0222624_1479894	Not Available	505	Open in IMG/M
3300022195\|Ga0222625_1522496	Not Available	519	Open in IMG/M
3300022534\|Ga0224452_1006576	All Organisms → cellular organisms → Bacteria	2889	Open in IMG/M
3300026696\|Ga0208476_100685	Not Available	753	Open in IMG/M
3300026716\|Ga0208344_103071	Not Available	510	Open in IMG/M
3300027018\|Ga0208475_1029152	Not Available	544	Open in IMG/M
3300027018\|Ga0208475_1029662	Not Available	539	Open in IMG/M
3300027277\|Ga0209846_1013247	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1387	Open in IMG/M
3300027332\|Ga0209861_1015130	Not Available	1155	Open in IMG/M
3300027379\|Ga0209842_1005774	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2454	Open in IMG/M
3300027718\|Ga0209795_10209091	Not Available	547	Open in IMG/M
3300027750\|Ga0209461_10144190	Not Available	575	Open in IMG/M
3300027750\|Ga0209461_10146063	Not Available	572	Open in IMG/M
3300027907\|Ga0207428_10289470	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1214	Open in IMG/M
3300027909\|Ga0209382_10717667	Not Available	1074	Open in IMG/M
3300028587\|Ga0247828_11139109	Not Available	519	Open in IMG/M
3300028716\|Ga0307311_10050609	Not Available	1104	Open in IMG/M
3300028717\|Ga0307298_10122126	Not Available	748	Open in IMG/M
3300028755\|Ga0307316_10068991	Not Available	1207	Open in IMG/M
3300028768\|Ga0307280_10103713	All Organisms → cellular organisms → Bacteria	948	Open in IMG/M
3300028771\|Ga0307320_10136834	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	943	Open in IMG/M
3300028771\|Ga0307320_10363860	Not Available	578	Open in IMG/M
3300028787\|Ga0307323_10159112	Not Available	816	Open in IMG/M
3300028799\|Ga0307284_10402256	All Organisms → cellular organisms → Bacteria	557	Open in IMG/M
3300028814\|Ga0307302_10004827	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella	5976	Open in IMG/M
3300028819\|Ga0307296_10111843	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1466	Open in IMG/M
3300028828\|Ga0307312_10892134	Not Available	589	Open in IMG/M
3300028876\|Ga0307286_10414370	Not Available	506	Open in IMG/M
3300028878\|Ga0307278_10208908	Not Available	870	Open in IMG/M
3300028878\|Ga0307278_10411264	Not Available	594	Open in IMG/M
3300028878\|Ga0307278_10490292	Not Available	537	Open in IMG/M
3300028880\|Ga0307300_10255517	Not Available	582	Open in IMG/M
3300028885\|Ga0307304_10279988	Not Available	732	Open in IMG/M
3300030510\|Ga0268243_1085101	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	721	Open in IMG/M
3300031824\|Ga0307413_11994826	Not Available	523	Open in IMG/M
3300031852\|Ga0307410_10714003	Not Available	846	Open in IMG/M
3300031901\|Ga0307406_10805811	Not Available	793	Open in IMG/M
3300031995\|Ga0307409_100135660	Not Available	2111	Open in IMG/M
3300031995\|Ga0307409_101884301	All Organisms → cellular organisms → Bacteria	627	Open in IMG/M
3300031996\|Ga0308176_12533535	Not Available	547	Open in IMG/M
3300032002\|Ga0307416_102651916	Not Available	598	Open in IMG/M
3300032004\|Ga0307414_10521925	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas fluorescens group → Pseudomonas fluorescens	1054	Open in IMG/M
3300032004\|Ga0307414_10861446	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	829	Open in IMG/M
3300032005\|Ga0307411_10894630	Not Available	788	Open in IMG/M
3300032126\|Ga0307415_100424352	Not Available	1142	Open in IMG/M
3300032126\|Ga0307415_101182309	Not Available	720	Open in IMG/M
3300032126\|Ga0307415_102530449	Not Available	506	Open in IMG/M
3300032159\|Ga0268251_10077641	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Asanoa → Asanoa ferruginea	1144	Open in IMG/M
3300032159\|Ga0268251_10350938	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	626	Open in IMG/M
3300034150\|Ga0364933_191443	Not Available	536	Open in IMG/M
3300034172\|Ga0334913_047537	Not Available	912	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	82.01%
Host-Associated	Host-Associated	17.99%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	72.66%
Plants	Host-Associated → Plants	17.99%
Aquatic	Environmental → Aquatic	9.35%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	71.94%
Rhizosphere	Host-Associated → Plants → Rhizosphere	12.23%
Sediment	Environmental → Aquatic → Sediment	5.76%
Phylloplane	Host-Associated → Plants → Phylloplane	4.32%
Freshwater	Environmental → Aquatic → Freshwater	3.60%
Phyllosphere	Host-Associated → Plants → Phyllosphere	1.44%
Floodplain	Environmental → Terrestrial → Floodplain	0.72%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	61.87%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	12.23%
Sand	Environmental → Terrestrial → Soil → Sand	6.47%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.76%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	4.32%
Sediment	Environmental → Aquatic → Freshwater → Sediment	3.60%
Loam	Environmental → Terrestrial → Soil → Loam	3.60%
Phylloplane/Leaf Surface	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface	1.44%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.72%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	57.55%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	12.23%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	6.47%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.76%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	4.32%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	3.60%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.88%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.44%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.44%
Unclassified	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified	1.44%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.72%
Desert	Environmental → Terrestrial → Soil → Unclassified → Desert	0.72%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.72%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.72%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	28.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	14.39%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	8.63%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	8.63%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	6.47%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	5.04%
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	4.32%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	3.60%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	3.60%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.88%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.16%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.44%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.44%
Agave	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified → Agave	1.44%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.72%
Sub-Biocrust Soil	Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil	0.72%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.72%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.72%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.72%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005169	Soil and rhizosphere microbial communities from Laval, Canada - mgHPA	Environmental	Open in IMG/M
3300005562	Agave microbial communities from Guanajuato, Mexico - As.Ma.e	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300009809	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_30_40	Environmental	Open in IMG/M
3300009814	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_50_60	Environmental	Open in IMG/M
3300009816	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_0_10	Environmental	Open in IMG/M
3300009836	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_10_20	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_11112015	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300014487	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG	Environmental	Open in IMG/M
3300015265	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG	Host-Associated	Open in IMG/M
3300015359	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09182015	Environmental	Open in IMG/M
3300017657	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09212015	Environmental	Open in IMG/M
3300018052	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2	Environmental	Open in IMG/M
3300018053	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1	Environmental	Open in IMG/M
3300018056	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1	Environmental	Open in IMG/M
3300018074	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b2	Environmental	Open in IMG/M
3300018075	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1	Environmental	Open in IMG/M
3300018078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coex	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300021073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_b1 redo	Environmental	Open in IMG/M
3300021078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo	Environmental	Open in IMG/M
3300021951	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022195	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022534	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1	Environmental	Open in IMG/M
3300026696	Grasslands soil microbial communities from Gorham, Kansas, USA that are Nitrogen fertilized - NN630 (SPAdes)	Environmental	Open in IMG/M
3300026716	Grasslands soil microbial communities from Kansas, USA, that are Nitrogen fertilized - NN592 (SPAdes)	Environmental	Open in IMG/M
3300027018	Grasslands soil microbial communities from Kansas, USA, that are Nitrogen fertilized - NN575 (SPAdes)	Environmental	Open in IMG/M
3300027277	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_20_30 (SPAdes)	Environmental	Open in IMG/M
3300027332	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_30_40 (SPAdes)	Environmental	Open in IMG/M
3300027379	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_10_20 (SPAdes)	Environmental	Open in IMG/M
3300027718	Agave microbial communities from Guanajuato, Mexico - Or.Ma.rz (SPAdes)	Host-Associated	Open in IMG/M
3300027750	Agave microbial communities from Guanajuato, Mexico - As.Ma.rz (SPAdes)	Host-Associated	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300028716	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_198	Environmental	Open in IMG/M
3300028717	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_158	Environmental	Open in IMG/M
3300028755	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_356	Environmental	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300028771	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369	Environmental	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300028799	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_123	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028876	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300028880	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_181	Environmental	Open in IMG/M
3300028885	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185	Environmental	Open in IMG/M
3300030510	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG (v2)	Environmental	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated	Open in IMG/M
3300031901	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2	Host-Associated	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032004	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3	Host-Associated	Open in IMG/M
3300032005	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1	Host-Associated	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300032159	Agave microbial communities from Guanajuato, Mexico - As.Ma.e (v2)	Host-Associated	Open in IMG/M
3300034150	Sediment microbial communities from East River floodplain, Colorado, United States - 25_j17	Environmental	Open in IMG/M
3300034172	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 9HMS	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1107030741	3300000956	Soil	VSSYCPRSSLPATVLAWLAIRLAHLAPPRPPGQGGTRPLPLEVRLDAVGAVLLDGLSYRRAGRVVGISKTEVGDSLDLLLGPLAALGFCQPDGSFIATLDQLGRWLGEIGPRR*
JGI10216J12902_1252992763	3300000956	Soil	VLAWLAARLAHLHPARPPDEGGTPPLPLEVRLDAVTAVLLDGLSYRRAARMVGISKTEVGDSLDL
Ga0062595_1025810811	3300004479	Soil	LSYCPRSSLSAAVLAWLAGRLADLAPPRPAGQGGNRPLPLDVRLDAVAAVLLDGLSYRRAARMVGISKTEVGDSLDLL
Ga0066810_101008112	3300005169	Soil	VSSYCPRSSLPATVLAWLATRLAHLAPPRPPGQGGTRPLPLEVRLDAVGAVLLDGLSYRRAGRVVGISKTE
Ga0058697_101048261	3300005562	Agave	VSSYCPRSSLPATVLGWLAGRLAHLFPPRPRRRGGTRPLSLEVRLDAVAAVLLDGLSYRRAGRAVGISKTEVGDSLDLLLGPLGALGFCQPD
Ga0058697_101873851	3300005562	Agave	VLAWLTARLAHLLPPRPSGTGGTPPLSLEVRLDAVAAVILDGLSFRRAGRMVAISKTEVGDSLDLLLGPLATLGYCQPDGSFIASLDDLR
Ga0058697_104899331	3300005562	Agave	LSYCPRSSLPTAALAWLAARLAHLLPSRRPGTGGSPPLSLEVRLDAVAAVRLDGLSYWRAARMVGISKTEVGDSPDHRSEEFLYELK
Ga0066905_1004628731	3300005713	Tropical Forest Soil	LSHCPRSSLPAHVLAWLAVRLAHLVPARPPGHGGTPPLSLEARLDAVAAVILDGLPYRRAARMVGICKTEVGDSMDL
Ga0075421_1008361543	3300006845	Populus Rhizosphere	LSYCPRSSLPVEVLTWLVGRLAHLLPPRPPRQGGNPPLPLEVRLDAVGAVILDGLSYRRAGRMVAISKTEVGDSLDLLL
Ga0075431_1014380351	3300006847	Populus Rhizosphere	MPYCPRSSLPAQVLVWLADRLAALSPPRPPGHPGRPPLLLEVRLDAVGAVLLDGLSYRRAGRMVGISKTEVGDSLDLLLGALAALGICQPDGTFVTGLAGLADRLAEMA
Ga0105089_10802191	3300009809	Groundwater Sand	VSSYCPRSSLPATVLGWLAARLAHLAPPAPPGRGGTPPLPLENRLDAVAAVLLDGLSYRRAGRMVGISKTEVGDSMDLLL
Ga0105089_11072701	3300009809	Groundwater Sand	MSYCPRSSLPAMVLDWLVGRLAHLLPPRPHGQGGTPPLALEVRLDAVAAVLLDGLSYRRAGRMVGISKTEVGD
Ga0105082_10568921	3300009814	Groundwater Sand	VLAWLAGRLAHLVPPRPPGQGGTRPLSLEVRLDAVAAVLLDGLSYRRAGRMVGISKTAVGDSLDLLLGELGTLGF
Ga0105076_10755022	3300009816	Groundwater Sand	VLAWLARRLAHLTPPRPAGQGGTRPLSLEVRLDAVAAVILDGLSYRRAGRMVGISKTEVGDSLDLLLDELGALG
Ga0105068_10063881	3300009836	Groundwater Sand	VPASCPRSSLPAKVLTWLAGRLADLNPPRRPGQGGTRPLVLEVRLDAVAAVILDGLSYRRAGRMVGISKTEVGDSLDLLLGPLADLGFCQPDGTFVTGLGELGERLAEMA
Ga0105068_10822292	3300009836	Groundwater Sand	VFKPAKEVWSPVAYCPRSSLPANALAWLAARLAHLAPPRPPGQGGAPPLPLEVRLDAVAAVLLDGLSYRRAGRAVGISKTEVGDSLDLL
Ga0126313_101532794	3300009840	Serpentine Soil	LSSCPRSSLPADVLAWLAAHFAHLLPSRPPGKGGTPPLSLEVRLDAVAAVILDGLSYRRAGRAVGISKTEVG
Ga0126313_115485111	3300009840	Serpentine Soil	VLAWLAARLAHLNPPRRTGQGGTRPLALEVRLDAVAAVILDGLSYRRAGRMVGISKTEVGDSLDLLLGPLAALGFRQPRRDLHHQPRRASERLGEMAEVGEA
Ga0126315_102805271	3300010038	Serpentine Soil	VLRWLAEGLAHLCPARRGGQGGTPPLPLEVWLDALGAVVLDGLSYRRAARMVGICKTEVGDSLDLLLGELAALGLCQPDGTFVATLQNLR
Ga0126315_103441732	3300010038	Serpentine Soil	LSYCPRSFLAVEVLHWLAQRLAHLRPARRAGQGGTPPLPLEVRLDGLSYRRAARMVGICKTEVGDSLDLLLGELAALGLCQPDGTFVATL
Ga0126312_100548222	3300010041	Serpentine Soil	LSYCPRSSLPAEVLTYLAGRLAHLLPPRPPGVGGNPPLALEVRLDAVAAVLLDGLSYRRAGRMVGISKTEVGDSMDLLLAGLAALGYCQPDGTFITTLADLRERLGGDGPNRRGGLG*
Ga0126312_104798792	3300010041	Serpentine Soil	VLHWLAQRLAHLRPARRAGQGGTPPLPLEVRLDVLGAVVLDGLSYRRAARMVGICKTEVGDSLDLLLGE
Ga0126312_105630681	3300010041	Serpentine Soil	VLRWLAERRAHLCPARRPGQGGTPPLPLEVRLDALGAVVLDGLSYRRAARMVGICKTEVGDSL
Ga0126312_111077911	3300010041	Serpentine Soil	VLRWLAERLAHLYPARRGGQGGTPPLPLEVRLDALGAVVDGLSHRRAARMVGICKTEVGDSLDLLWASWPR
Ga0126314_100658881	3300010042	Serpentine Soil	VSSYCPRSSLPATVLGWLAGRLAHLLPPRPPRRGGTRPLSLEVRLDAVAAVLLDGLSYRRAGRAVGISKTEV
Ga0126314_114438761	3300010042	Serpentine Soil	LSYCPRSFLAVEVLHWLAQRLAHLRPARRAGQGGTPPLPLEVRLDGLSYRRAARMVGICKTEV
Ga0126310_100228284	3300010044	Serpentine Soil	VLAWLAARLAHLAPPRPPGQGGTPPLALEVRLDAVAAVLLDGLSYRRAGRAVGISKTEVGDSLDLLLGPLAALGFCQPDGSFITTPAELGCWLAEMTASG
Ga0126311_106779922	3300010045	Serpentine Soil	LSYSPRSSLPVEVCAWLAGRLAHRPPPRPPGQGGTPPLSLEVRLDALGAVVLDGLSYRRAGRMVGISKTSVGDS
Ga0134111_103889062	3300010329	Grasslands Soil	VLAWLAVRLAHLHPARPPGQGGTPPLSLEVRLDAVAAVLLDGLSYRRAGRAVGISKTEVGDSMDLLLGPLGDLGFCQPDGTFITSLDQLGRWL
Ga0134080_105438792	3300010333	Grasslands Soil	LSYCPRSSLPAQVLAWLADRLAHLLPPRPPGQGGTRTLALEVRLDAVAAVLLDGLSYRRAGRMVGISKTAVGD
Ga0137365_108187541	3300012201	Vadose Zone Soil	MEVWSPLSYCPRSSLPVEVLGWLAGRLAHLTPPRPPGRGGNPPLALEVRLDAVAAVLLDGLSYRRAGRMVGISKTEVGDSLDLL
Ga0137365_109192591	3300012201	Vadose Zone Soil	LSYCPRSSLPAHALAWLAGRLAHLNPPRPPGQGGTPPLSLEVRLDAVAAVLLDGLSYRRAGRAVGISKTEVGDSLDLL
Ga0137374_100366007	3300012204	Vadose Zone Soil	VFTPAEEVRSPLSYCPRSSLPAKALTWLTSRLAHLLPPHPSRRGGNRPLPLEVRLDAVGAVLLDGLSYRRAGPGSGVSKTAVGDSLDLLLGPLVALGFCQPDGSFITTTSCVSIWRR*
Ga0137374_106898871	3300012204	Vadose Zone Soil	LSYCPRSSLPAKVLAWLADRLAHLLPPRPAGQGGNPPLSLEVRLDAVGRWWWTGCRTGAPAGRSGSCKTEVGDSLDLPLGPLGTL
Ga0137374_107502221	3300012204	Vadose Zone Soil	MAYCPRSSLPASVLKWLAARLAHLAPPRPPGKGGTPPLALEVRLDAVGAVILDGLSYRRAGRAVGISKTEVGDSMDLLLGPLAALGFCQADGSFISTLEKLGEWLAEMAAAGEA
Ga0137374_107847481	3300012204	Vadose Zone Soil	MAPVPSYCPRSSLPADVLAWLAGRLRRLLPPRPPGMGGNPPLALEVRLDAVAAVILDGLSYRRAGRMVGISKTEVGDSMDLLLGKLA
Ga0137374_108576131	3300012204	Vadose Zone Soil	VLAWLADRLAHLHPARPPGQGGTPPLPLKVRLDAVAAVLLDGLSYRRAGRVVGISKTEVGDSMDLLLGPLGELGFCQPDG
Ga0137374_112631571	3300012204	Vadose Zone Soil	LPAKVLAWLAARLAHLLPPRPPGQGGTPPLSLEVRLDAVAAVILDGLSYRRAGRAVGISKTEVGDSLDLLLGPLGALGFCQPDGTFVTTLDDLRALL
Ga0137380_102609302	3300012206	Vadose Zone Soil	VLAWLAARLAHLLPSRPPGQGGTPPLCLEVCLDAVAAVLLDGLSYRRAGRMVGISKTEVGDSLDLLLGPLAALGSCQPDGSFVTTLDDLRALLVEMA
Ga0137380_103265293	3300012206	Vadose Zone Soil	VFTPAEEVRGPLSYCPRSSLPAKVLTWLASRLAHLLPPRPPGQGGTPPFCLEVRLDAVAAVILDGLSYRRAGRMVGISKTEVGDSLDLLLGPLA
Ga0137380_112751341	3300012206	Vadose Zone Soil	LSYCPRSSLPAHALAWLADRLAHLHPARPPGQGGTPPLSLEVRLDAVAAVILDGLSYRRAGRAVGISKTEVGDSLDLLLGPLAALGYCQP
Ga0137381_112430141	3300012207	Vadose Zone Soil	MEVWSPLSYRPRSSLPADVLAWLAARLAHLLPSRPPGKGGTPPLSLEVRLDAVAAVLLDGLSYRRAARMVGICKTEVGDSLDLL
Ga0137379_109732031	3300012209	Vadose Zone Soil	LSSCPRSSLPVEVLTWLAGRLAHLTPPRPPGRGGTPPLALEVRLDAVAAVLLDGLSYRRAGRMVGISKTEV
Ga0137378_104629472	3300012210	Vadose Zone Soil	VLAWLATRLAHLTPPRPPGQGGNPPLSLEVRLDAVAAVILDGLSYRRAGRMVGISKTEVGDSMD
Ga0137377_116026681	3300012211	Vadose Zone Soil	VPSYCPRSSLPAKVLAWLAARLAHLHPPRRPGQGGTRPLALEVRLDAVAAVILDGLSYRRAGRMVGISKTEVGDSLDLLLGPLAALGFCQPDGTFITSLDELGERLGEMA
Ga0137387_102376392	3300012349	Vadose Zone Soil	VLAWLAARLAHLLPSRPPGQGGTPPLCLEVCLDAVAAVLLDGLSYRRAARMVGISKTEVGDSLDLLLGELAAVGSC
Ga0137386_110803971	3300012351	Vadose Zone Soil	VLGWLCARLAHLLPPRPPGRGGTRPLSLEVRLDAVAAVLLDGLSYRRAGRAVEISKTEVGDSLDLLLGPLGELGFCQPDGTFITSLDQLRQWLGEMAQAGEAV
Ga0137386_111173391	3300012351	Vadose Zone Soil	VFTPAEEVRGPLSYCPRSSLPAKVLTWLASRLAHLLPPRPPGQGGTPPFCLEVRLDAVAAVILDGLSYRRAGRMVGISKTEVGDSLDLLLGPLAAL
Ga0137367_107300381	3300012353	Vadose Zone Soil	VLAWLADRLAHLLPPRPPGQGGTPPLSLEVRLDAVGAVILDGLSYRRAARAVGISKTEVGDSLDLLLGPLGDLG
Ga0137367_109183231	3300012353	Vadose Zone Soil	LSYCPRSSLPAHALAWLADRLAHLHPPRPPGQGGTPPLSLEVRLDAVAAVILDGLSYRRAGRAVGISKTEVGDSLDLLLGPLAALGYCQPDGTFITSLDDL
Ga0137369_109936301	3300012355	Vadose Zone Soil	VLAWLADRLAHLHPARPPGQGGTPPLPLKVRLDAVAAVLLDGLSYRRAGRVVGISKTEVGDSMDLLLGPLGELGFCQPDGTFITSLDQLRQWL
Ga0137369_111413492	3300012355	Vadose Zone Soil	LSYCPRSSLPAAVLAWLADRLAHLLPPRPPGQGGTPPLSLEVRLDAVAAVILDGLSYRRAGRMVAISKTEVGDSLD
Ga0137369_111420141	3300012355	Vadose Zone Soil	LSYCPRSSLPAPVLGWLAARLAHLTPPRRPGQGGTRPLSLEARLDAVAAVILDGLSYRRAGRMVGICKTEVGDSMDLLLPSLAALGYSQPDGT
Ga0137371_100586301	3300012356	Vadose Zone Soil	LSYCPRSSLPAEVLAWLAGRLAHLLPSRPPGTGGTPPLSLEVRLDAVAAVLLDGLSYRRAGRAAGISKTEVGDSLDLLL
Ga0137371_107210532	3300012356	Vadose Zone Soil	LSYCPRSSLPAKVLDWLAGRLAQLAPPRPPGLGGTPPLALEVRLDAVAAVVLDGLSYRRAGRMVGISKTEVGD
Ga0137371_107488641	3300012356	Vadose Zone Soil	MEVWSPLSYCPRSSLPVEVLGWLAGRLAHLTPPRPPGRGGNPPLALEVRLDAVAAVLLDGLSYRRAGRMVGISKTEVGDSLDLLLGPLAALGFCQPDGTFITTSLA
Ga0137384_102585351	3300012357	Vadose Zone Soil	VLAWLAARLAHLLPSRPPGQGGTPPLALEVRLDAVAAVILDGLSYRRAGRAVGISKTEVGDSLDLLL
Ga0137368_100487303	3300012358	Vadose Zone Soil	LSYCPRSSLPAKVLTWLADRLAHLLPPRPPGQSGTPPLPLKVRLDAVAAVLLDGLSYRRAGRAVGISKTEVG
Ga0137368_100770291	3300012358	Vadose Zone Soil	VSYCPRSSLPAKALTWLADRLAHLVPPRPPGQGGTRPLPLEVRLDAVAAVLLDGLSYRRAGRMVGISKTEVGDSLDLLLGPLA
Ga0137368_102539861	3300012358	Vadose Zone Soil	VLAWLADRLAHLHPARPPGQGGTPPLPLKVRLDAVAAVLLDGLSYRRAGRVVGISKTEVGDSMDLLLGPLGELGFCQPD
Ga0137375_101003765	3300012360	Vadose Zone Soil	LSYCPRSSLPVEVLTWLVSRLAHLLPPRPPGRGGTPPLPLEIRLDAVGAVILDGLSYRRAGRMVGICKTEVGDSLDLLLAALATLGVCQPDGTFVTSLADLRHR
Ga0137375_104040501	3300012360	Vadose Zone Soil	VLAWLAARLAPLLPSRPPGTGGTPPLSLEVRLDAVAAVLLDGLSYRRAGRAVGISKTEVGDSLDLLLGPLAGLGFCQPDGTFITTLDDLRALLVEMAGTGE
Ga0137375_104891001	3300012360	Vadose Zone Soil	VLAWLADRLAHLHPARPPGQGGTPPLPLKVRLDAVAAVLLDGLSYRRAGRVVGISKTEVGDSMDLLLGPLGELGFCQPDGTFITSL
Ga0137375_108196691	3300012360	Vadose Zone Soil	GGLVPLSYCPRSSLPAQVLAWLAARLAHLLAPRPPGQGGNPLLPLEVRLDAVAAVALDGLSYRRAGRAVGISKTEVGDSMDLP*
Ga0137375_112093141	3300012360	Vadose Zone Soil	LPAKVLAWLAARLAHLLPPRPPGQGGTPPLSLEVRLDAVAAVILDGLSYRRAGRAVGISKTEVGDSLDLLLGPLGALGFCQPDGTFVTTLDDLRALLVEMAGTGEA
Ga0137373_100373137	3300012532	Vadose Zone Soil	VLAWLTVRLAHLHPARPPGQGGTPPLSLEVRLDAVAAVLLDGLSYRRAGRAAGISKTEVGDSMDLLLGPLGDLGFCQPDGTFITSLDQLGRWLAEMAQ
Ga0137373_101069361	3300012532	Vadose Zone Soil	VLGWLAARLAHLTPPRRPGQGGTRPLSLEARLDAVAAVILDGLSYRRAGRMVGICKTEVGDSLDLLL
Ga0137373_106803921	3300012532	Vadose Zone Soil	LSYCPRSSLPAAVLAWLAARLAHLVPSRRPSTGGTPPLSLEVRLDAVAAVVMDGLSYRHAGRVVGICKTAVGDSLDLLLGPLADLGFCQPDGTFITSLDELGQRLGEMA
Ga0137373_108340511	3300012532	Vadose Zone Soil	VLAWLADRLAHLLPPRPPGQGGTPPLSLEVRLDAVGAVILDGLSYRRAGRAVGISKTEVGDSLDLL
Ga0137373_110383321	3300012532	Vadose Zone Soil	LSYCPRSSLPAKVLTWLADRLAHLLPPRPPGQSGTPPLPLKVRLDAVAAVLLDGLSYRRAGRAVGISKTEV
Ga0182000_101286592	3300014487	Soil	VLAWLAARLTHLLPSRPPGTGGTPPLPLEVRLDAVAAVLLGGPSYRRAGRAVGVSKTEVGDSLDLLLGELGALGFCQPDGTFITTLDDLRRWLSEMA
Ga0182005_11925191	3300015265	Rhizosphere	LPVEVLAWLARRLTHLIPPRPPGLGGNRPLALEVRLDAVAAVILDGLSYRRAGRMVGISKTEVGDSLDLLLGPLAAVGYCQPDGTFVATLDDLRE
Ga0134085_105679561	3300015359	Grasslands Soil	MAYCPRSSLPATVLDWLVARLAHLAPPRRPGRGGTPPLALEVRLDAVGSVLLDGLSYRRAGRAVGISKTAVGDSMDLLLGPLGALGFCQPDGTFVTTQEELRELLAEMA
Ga0134074_11701312	3300017657	Grasslands Soil	MAYCPRSSLPATVLDWLVARLAHLAPPRRPGRGGTPPLALEVRLDAVGSVLLDGLSYRRAGRVVGISKTAVGDSLDLLLGALGALGFCQPDGSFVTTVDELRELLAEMAAAGEAVLV
Ga0134074_13404161	3300017657	Grasslands Soil	VSSYCPRSSLPAMVLDWLVGRLAHLLPARPHGQGGTQPLALEVRLDAVAAVLLDGLSYRRTGNMVGISKTEVGDSLDLLVGPLGALGSVS
Ga0184638_10682411	3300018052	Groundwater Sediment	VSSYCPRSSLPATVLAWLATRLAYLTPPRPRGVGGTPPLSLEVRLDAVGAVILDGLTYRRAGRAVGISKTEVGDSLDLLLGPLGALG
Ga0184626_104273611	3300018053	Groundwater Sediment	VSSYCPRSSLPAMVLDWLVGRLAHLLPPRPHGQGGTPPLALEVRLDAVAAVLLDGLSYRRAGRMVGISKTEVGDSLDLLLGPLGALGFCQPDG
Ga0184623_100582231	3300018056	Groundwater Sediment	LSYCPRSSLPAEVLAWLASRLAHLTPSRRPGLGGTPPLSLEVRLDAVGAVILDGLSYRRAGRVVGISKTEVGDSLDLLLDELGA
Ga0184640_101164581	3300018074	Groundwater Sediment	VLAWLAVRLAHLHPARPPGQGGTPPLSLEVRLDAVAAVLLDGLSYRRAGRAVGISKTEVGDSMDLLLGPLGDLGLCQPDGTFITSLDQLGRWLHRVPA
Ga0184632_104659101	3300018075	Groundwater Sediment	VSSYCPRSSLPAMVLDWLVGRLAHLLPPRPHGQGGTPPLALEVRLDAVAAVLLDGLSYRRAGRMVGISKTEVGDSLDLLLGPLGA
Ga0184612_101199791	3300018078	Groundwater Sediment	VSSYCPRSSLPATVLAWLATRLAYLTPPRPRGVGGTPPLSLEVRLDAVGAVILDGLTYRRAGRAVGISKTEVGDSLDLLLGPLAALGF
Ga0184612_102390052	3300018078	Groundwater Sediment	VSSYCPRSSLPAMVLDWLVGRLAHLLPPRPHGQGGTPPLALEVRLDAVAAVLLDGLSYRRAGRMVGISKTEVGDSLDLLLGPLGALGFCQPDGTFVTTLDD
Ga0190268_101182361	3300018466	Soil	LSYCPRSSLPVEVLAWLACRLAHLLPPRPPGRGGTRPLSLGVRLDAVGAVLLDGLSYRRAGRMVGISKTEVGNSIALLLGEIAKLRICQPAGTFVTNLAD
Ga0190267_106597881	3300019767	Soil	LSYCPRSSLPAHVLAWLADRLAHLLPPRPPGQGGTPPLALEVRLDAVAAVILDGLSYRRAGRAVGISKTEVGDSLDLLLGPLGALRFCQPDGTFITSLDDLRQWLAEMSCSGEAV
Ga0190267_109544601	3300019767	Soil	VLAWLAVRLAHLHPARPPGQGGTPPLSLEVRLDAVAAVLLDGLSYRRAGRAVGISKAEVGDSMDLLLGPLGDLGFCQPDGTFITSLDQLGRWLAE
Ga0210378_102594502	3300021073	Groundwater Sediment	VLAWLAVRLAHLHPARPPGQGGTPPLSLEVRLDAVAAVLLDGLSYRRAGRAVGISKTEVGDSMDLLLGPLGDLGFCQPDGTFIT
Ga0210378_103684711	3300021073	Groundwater Sediment	LSYCPRSSLPVEVLAWLAGRLAHLLPPRSGGRGGNPPLPLEVRLDAVGAVILDGLSYRRAGRAVGISKTEVGDSLDLLLGALAALGY
Ga0210381_101126072	3300021078	Groundwater Sediment	LSYCPRSSLPAEVLTYLAGRLAHLLPPRPPGVGGNPPLALEVRLDAVAAVLLDGLSYRRAGRMVGISKTEVGDSMDLLLAGLAGLGYCQPDGTFI
Ga0222624_14798941	3300021951	Groundwater Sediment	VSSYCPRSSLPATVLDWLAARLAHLAPPAPPGRGGTPPLPLEIRLDAVAAVLLDGLSCRRAGRMVGISKTEVGDSMDLLLGELAAVGFCQPDGSFITTLAELGCW
Ga0222625_15224961	3300022195	Groundwater Sediment	VSSYCPRSSLPATVLDWLAARLAHLAPPAPPGRGGTPPLPLEIRLDAVAAVLLDGLSYRRACRMVGISKTEVGDSMDLLLGELAAVGFCQPDGSF
Ga0224452_10065761	3300022534	Groundwater Sediment	VLAWLAVRLAHLHPARPPGQGGTPPLSLEVRLDAVAAVLLDGLSYRRAGRAVGISKTEVGDSMDLLLGPLGDL
Ga0208476_1006852	3300026696	Soil	LSYCPRSSLPVEVLAWLARRLAYLIPPRPPGLGGNRPLALEVRLDAVAAVILDGLSYRRAGRMVGISKTEVGDSMDLLLPKLAALGCCQPDGTFITTLDDVGERLVEM
Ga0208344_1030712	3300026716	Soil	LSYCPRSSLPAAVLAWLAARLAHLLPSRPPGQGGTPPLSLEVRLDAVAAVLLDGLSYRRAARMVDISKTEVGDSMDLLLAELAAIGYCQPDGMFITTLAGLG
Ga0208475_10291521	3300027018	Soil	LAYCPRSSLPAKVLAWLASRLAHLTPPRPRGQGGTPPLPLEVRLDAVAAVLLDGLSYRRAGRAVGISKTEVGDSMDLLLPTLAALGYCQPDGSFVTTLAEVRERLVEMAEVGEAV
Ga0208475_10296621	3300027018	Soil	MAYCPRSSLPTSVLAWLAGRLADLLPSRPPGTGGTPPLPLEIRLDAVAAVILDGLSYRRAARMVGIAKTEVGDSLDLLLGPLGD
Ga0209846_10132472	3300027277	Groundwater Sand	MEVWSPLSYCPRSSLPANVLAWPASRLAHLAPSRPPGRGGTPPLALEVRLDAVAAVLMDGLSSRRAARMVGICKTEVGDSLDLGRAG
Ga0209861_10151301	3300027332	Groundwater Sand	VSSYCPRSSLPADVLAWLVARLAYLLPPRPLGRGGTPPLALEVRLDAVAAVVLDGLSYRRAGRVVAISKTEVGDSMDLLLGPLASL
Ga0209842_10057741	3300027379	Groundwater Sand	MEVWSPLSYCPRSSLPANVLAWPASRLAHLAPSRPPGRGGTPPLALEVRLDAVAAVLMDGLSSRRAARMVGICKTEVGDSLDLGRAGPSFSAP
Ga0209795_102090912	3300027718	Agave	VSYCPRSSLPVEVLTWLTSRLGHLLPPRPPGRGRSPPLALEVRLDTVGAVVLTGLSYRRTGRRVEISKTEVGDSMTLLLGAGRARVCQPEA
Ga0209461_101441901	3300027750	Agave	MGGDRPLEGSHAFQKVQSPLSYCPRSSLPVEVLHWLAQRLAHLRPARRAGQGGTPPLPLEVRLDALDTVMLDGLSYRHAARMVGICKTEVSDSLDLLLGELAALG
Ga0209461_101460631	3300027750	Agave	VSSYCPRSSLPATVLGWLAGRLAHLFPPRPPRRGGTRPLSLEVRLDAVAAVLLDGLSYRRAGRAVGISKTEV
Ga0207428_102894701	3300027907	Populus Rhizosphere	VLVWLAARLAYLLPSRPPGTGGRPPPSLEVRLDAVAAVLLDGLSGRRAGWAVGISKTEVGDSMNLRLGPLTVPPR
Ga0209382_107176672	3300027909	Populus Rhizosphere	MAYCPRSSLPASVLAWLARRLAHLAPPRRPGTGGTPPLSLEVRLDAVGSVLLDGLSYRRAGRAVGISKTAVGDSLDLLLGELAALGFCQPDGSFLT
Ga0247828_111391091	3300028587	Soil	VSSYCPRSSLPATVLVWLAARLAHLAPPAPPGRGGTPPLPLEIRLDAVAAVLLDGLSYRRAGRMVGISKTEVGDSMDLLLGELAAVGFCQPDGSFITTLADLGCW
Ga0307311_100506092	3300028716	Soil	MLGVAVMGTGPWEGLHRFRGGPVPLSYCPRSSLPAEVLTYLAGRLAHLLPPRPPGVGGNPPLALEVRLDAVAAVLLDGLSYRRAGRMVGISKNEVGDSMDLLLAGLAALGYCQPDGTFITTPCGPARAPWGDGRRRRGGLG
Ga0307298_101221261	3300028717	Soil	LSYCPRSSLPAEVLTYLAGRLAHLLPPRPPGVGGNPPLALEVRLDAVAAVLLDGLSYRRAGRMVGISKTEVGDSMDLLLAGLAALGYCQPDGTFITTPCGPARAPWGDGRRRRGGLG
Ga0307316_100689911	3300028755	Soil	LSYCPRSSLPAEVLTYLAGRLAHLLPPRPPGVGGNPPLALEVRLDAVAAVLLDGLSYRRAGRMVGISKTEVGDSMDLLLAGLAALGYCQPDGTFI
Ga0307280_101037131	3300028768	Soil	VLAWLAVRLAHLHPARPPGQGGTPPLSLEVRLDAVAAVLLDGLSYRRAGRAVGISKTEVGDSMDLLLGPL
Ga0307320_101368341	3300028771	Soil	LEGSHAFQEVQSPLSHRPRSSLPIEVLRWLAERLAHLCPARRGGQGGTPPLRLEVRLDALGAVVLDGLSYRRAARMVGICMTEVGDSLDLLLGELAALGLCQPDGTFVATLQDLRE
Ga0307320_103638601	3300028771	Soil	LSYCPRSSLPAEVLTYLAGRLAHLLPPRPPGVGGNPPLALEVRLDAVAAVLLDGLSYRRAGRMVGISKTEVGDSMDLLLAGLA
Ga0307323_101591121	3300028787	Soil	LSYCPRSSLPAEVLTYLAGRLAHLLPPRPPGVGGNPPLALEVRLDAVAAVLLDGLSYRRAGRMVGISKNEVGDSMDLLLAGLAALGYCQPDGTFITTPCGPARAPWGDGRRRRGGLG
Ga0307284_104022561	3300028799	Soil	VSSYCPRSSLPATVLDWLAARLAHLAPPAPPGRGGTPPLPLEIRLDAVAAVLLDGLSYRRAGRMVGISKTEVGDSMDLLLGELAAVGFCQPDGSFITTLAELGCWLSEMAGSGE
Ga0307302_100048274	3300028814	Soil	LSYCPRSSLPAEVLTYLAGRLAHLLPPRPPGVGGNPPLALEVRLDAVAAVLLDGLSYRRAGRMVGISKTEVGDSMDLLLAGLAALGYCQPDGTFITTPCGPARVARGDGPNRRGGLG
Ga0307296_101118431	3300028819	Soil	LSYCPRSSLPAEVLTYLAGRLAHLLPPRPPGVGGNPPLALEVRLDAVAAVLLDGLSYRRAGRMVGISKTEVGDSMDLLLAGLAALGYCQPDGMFI
Ga0307312_108921341	3300028828	Soil	LSYCPRSSLPAEVLTYLAGRLAHLLPPRPPGVGGNPPLALEVRLDAVAAVLLDGLSYRRAGRMVGISKTEVGDSMDLLLAGLAALGYCQPDGMFITAL
Ga0307286_104143701	3300028876	Soil	VSSYCSRSSLPATVLAWLATRLAHLAPPRPPGQGGTRPLPLEVRLDAVGAVLLDGLSYLRAGRVVGVSKTEVGDSLDLLL
Ga0307278_102089081	3300028878	Soil	VPLSYCPRSSLPAHVLAWLADRLAHLHPMRPPSQGGTPPLALEVRLDAVAAVLLDGLSYRRAGRAVGISKTEVGDSLDLLLGPL
Ga0307278_104112642	3300028878	Soil	MAYCPRSSLPAHVLDWLAARLAHLAPPRPPGTGGTRPLALEVRLDAVAAVLLDGLSYRRAGRMVGISKTEVGDSMDLLLGPLGDLGF
Ga0307278_104902921	3300028878	Soil	VSSYCPRSSLPATVLAWLATRLAHLAPPRPPGQGGTRPLPLEVRLDAVGAVLLDGLSYRRAGRVVGISKTEVGDSLDLLLGPLGALGFCQPDGSFIATL
Ga0307300_102555171	3300028880	Soil	LSYCPRSSLPAHVLAWLARRLAHLSPPRPPGRGGTPPLPLEVRLDAVGAVILDGLSYRRAGRAVGISKTEVGDSMDLLLGPLAALGYCQPDGSFITTLDDLRCWFSEMA
Ga0307304_102799881	3300028885	Soil	VLAWLAVRLAHLHPARPPGQGGTPPLSLEVRLDAVAAVLLDGLSYRRAGRAVGISKTEVGDSMDLLLGPLGDLGFCQPDGTFITSLDQLGRWLAEMAQAGEAVCLDGLA
Ga0268243_10851012	3300030510	Soil	LSYCPRSSLPAAVLAWLAGRLAHLLPSRPPGQGGTPPLSLEVRLDAVAAVLLDGLSYRRAGRAVGISKTEVGDSLDLL
Ga0307413_119948261	3300031824	Rhizosphere	LSYCPRSSLPAAVLTYLAGRLAHLLPPRPPGVGGNPPLALEVRLDAVAAVLLDGLSYRRAGRMVGISKTEVGDSMDLLLAGLAALGYCQPDGTFIT
Ga0307410_107140031	3300031852	Rhizosphere	LAYCPRSSPPAKVLAWLASRLAHLTPPRPRGQGGTPPLPLEVRLDAVAAVLLDGLSYRRAGRAVGISKTEVGDSMDLLLPTLAALGSCQPDGSFVTTLGEVAGAAGGDG
Ga0307406_108058111	3300031901	Rhizosphere	VLAWLAVRLAHLHPARPPGQGGTPPLSLEVRLDAVAAVLLDGLSYRRAGRAVGISKTEVGDSMDLLLGPLGDLGFCQPDGTFITSLDQLGRWLA
Ga0307409_1001356601	3300031995	Rhizosphere	VPSYCPRSSLPATVLAWLATRLAHLARPRPPGQGGTRPLPLELRLDAVGAVLLDGLSYRRAGRVVGISKTEVGDSLDLLLGPLAALGFCQPDGSFIATL
Ga0307409_1018843013	3300031995	Rhizosphere	LSYCPRSSLPAAVLAWLAGRLADLAPLRPLGQGGNRPLALEVRLDAVAAVVLDGLSYRRAARMVGISKTEVG
Ga0308176_125335351	3300031996	Soil	VLAWLADRLAHLVPPRPPGQGGTPPLSLEVRLDAVAAVLLDGLSYRRAGRMVAISKTEVGDSLDLLLDELAALGFCQPDGTFIATLDDVRQWLAEMAAAGEAV
Ga0307416_1026519162	3300032002	Rhizosphere	LSYCPRSSLPAAVLTYLAGRLAHLLPPRPPGVGGNPPLALEVRLDAVAAVLLDGLSYRRAGRMVGISKTEVGDSMDLLLA
Ga0307414_105219252	3300032004	Rhizosphere	MGGDRPLEGSHAFQEVQSPLSYCPRSFLAVEVLHWLAQRLAHLRPARRAGQGGTPPLPLEVRLDGLSYRRAARMVGICKTEVGDNLDLLLGELAALGLCQPDG
Ga0307414_108614462	3300032004	Rhizosphere	LEGSHAFQEVRSPLSYCPRSSLPVEVLRWLAERRAHLCPARRPGQGGTPPLPLEVRLDALGAVVLDGLSYRRAARMVGICKTEVGDSLDLLLGELAALGLCQPDGTFVATLQKPAGTAGGDD
Ga0307411_108946301	3300032005	Rhizosphere	LSYCPRSSLPAAVLAWLVDRLAHLLPPRPPDKGGTPPLPLEIRLDAVAAVLLDGLSYRRAGRMVGISKTEVGDSMDLLVGELAAVGFYQPDGSFITTLA
Ga0307415_1004243522	3300032126	Rhizosphere	LSYCPRSSLPAKVLAWLAGRLAHLLPPRLPGRGGNPPLALEVRLDAVAAVVLDGLSYRRAGRMVGISKTEVGDSLDLLLG
Ga0307415_1011823091	3300032126	Rhizosphere	VPSYCPRSSLPTKVLAWLADRLAHLTPSRPPGLGGTRPLALEVRLDAAAAVILDGLSYRRAGRMVGISKTEVGESMHLLLGELAALGFCQPDGRFTTTLEELRELLGEMAA
Ga0307415_1025304491	3300032126	Rhizosphere	LSYCPRSSLPAAVLTYLAGRLAHLLPPRPPGVDGNPPLALEVRLDAVAAVLLDGLSYRRAGRMVGISKTEVGDSMDLLLAGLAALGYG
Ga0268251_100776412	3300032159	Agave	LSYCPRSSLPAPVLAWLAARLAHLLPSRPPGQGGTPPLSLEVRLDAVAAVILDGLSSRRAARMVGISKTE
Ga0268251_103509381	3300032159	Agave	LSYCPRSSLPAAVLAWLAGRLAHLLPSRPPGQGGTPPLSLEVRLDAVAAVLLDGLSYRRAGRMVGISKTEVGDSLD
Ga0364933_191443_3_230	3300034150	Sediment	VLAWLATRLAHLAPPRPPGQGGTRPLPLEVRLDAVGAVLLDGLSYRRAGRVVGISKTEVGDSLDLLLGPLAALGFC
Ga0334913_047537_76_363	3300034172	Sub-Biocrust Soil	VLRWLAERLAHLRPARRAGQGGTPPLSLEVRLDALGAVVLDGLSYRRAARMVGICKTEVGDSLDLLLGELAALGLCQPDGTFVATLQTCANGWRR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F054649

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences