3300026691: Grasslands soil microbial communities from Gorham, Kansas, USA that are Nitrogen fertilized -NN621 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300026691
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053063 | Gp0054292 | Ga0208348
• Sample Name: Grasslands soil microbial communities from Gorham, Kansas, USA that are Nitrogen fertilized -NN621 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 10976655
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group	1
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): grassland biome → land → fertilized soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Gorham, Kansas, USA
• Coordinates
  • Lat. (^o): 39.05
  • Long. (^o): -99.1
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006569	Metagenome / Metatranscriptome	370	Y
F035464	Metagenome / Metatranscriptome	172	Y
F041595	Metagenome / Metatranscriptome	159	Y
F060671	Metagenome / Metatranscriptome	132	Y
F077746	Metagenome / Metatranscriptome	117	N
F085295	Metagenome / Metatranscriptome	111	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0208348_100041	Not Available	1532
Ga0208348_100168	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1054
Ga0208348_100262	Not Available	932
Ga0208348_100932	All Organisms → cellular organisms → Bacteria	630
Ga0208348_100940	Not Available	629
Ga0208348_101075	Not Available	607

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0208348_100041	Ga0208348_1000411	F077746	LAFLQHLDLVLSAALRGDEQQRLRRLSMTHALVMALLADPQELDQALRQAAARLAELDS
Ga0208348_100168	Ga0208348_1001681	F085295	MNGLSASELADLAGVTEAEVERLVDLGILVARDGPGPFLETDVQKVRLAAACEQAGLPMAGIASAIRAGRLSFAFLEAAPYRRWAVRSARTYRQVSQEAGVPLELLGSALEAIGFARMDPDELIREDELEVVRWCSSPSPAGSSTRPGWPGWAGPMWRACG
Ga0208348_100262	Ga0208348_1002621	F035464	VPKSRVLAAGLLMAVLVVGVAVPGGADDLATAKSRQKKMQAALDDATRELNQIESERHFAEQRLQAANSRLGYVRDDLAAARRALSGHVSSLYKAGGTRPLSGILGSSAEVVVSRVEFETILQEGQVAAVADAKIAFDSYEAAIRDVKAAMAS
Ga0208348_100932	Ga0208348_1009321	F060671	SLLMLAVVALFPVVLLALLLITSGLEGRVVGDSTPSAGTGERSGTRD
Ga0208348_100940	Ga0208348_1009401	F006569	WSTRVNGTPRLEGMHAATASITGWIEARVGGGPECLFCGRPAGRYKPLNEGTLTSLRKLWWCRPCETTWVA
Ga0208348_101075	Ga0208348_1010751	F041595	LSCTVGRDMTKPDDKLGTHEGLQEADPIPDAFPGQDPEVDQEWEKAKEDPMGGASPSS