Metagenome / Metatranscriptome Family F077746

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F077746
Family Type	Metagenome / Metatranscriptome
Number of Sequences	117
Average Sequence Length	65 residues
Representative Sequence	MVDDQAVLAFLQHLDLVLSEALRGDEQQRLRRLTMTHALVMALLADPQELDQALRQAAARLAELDS
Number of Associated Samples	56
Number of Associated Scaffolds	117

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	84.62 %
% of genes near scaffold ends (potentially truncated)	24.79 %
% of genes from short scaffolds (< 2000 bps)	73.50 %
Associated GOLD sequencing projects	53
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (51.282 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil (31.624 % of family members)
Environment Ontology (ENVO)	Unclassified (31.624 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (45.299 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 84.85% β-sheet: 0.00% Coil/Unstructured: 15.15%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 117 Family Scaffolds
PF02371	Transposase_20	2.56
PF01979	Amidohydro_1	1.71
PF00872	Transposase_mut	1.71
PF01872	RibD_C	1.71
PF08241	Methyltransf_11	1.71
PF01548	DEDD_Tnp_IS110	1.71
PF13340	DUF4096	1.71
PF00589	Phage_integrase	0.85
PF00561	Abhydrolase_1	0.85
PF12679	ABC2_membrane_2	0.85
PF03321	GH3	0.85
PF00313	CSD	0.85
PF04909	Amidohydro_2	0.85
PF13560	HTH_31	0.85
PF13751	DDE_Tnp_1_6	0.85
PF00082	Peptidase_S8	0.85
PF13424	TPR_12	0.85
PF03984	DUF346	0.85
PF06108	DUF952	0.85
PF03773	ArsP_1	0.85
PF07040	DUF1326	0.85
PF02653	BPD_transp_2	0.85
PF03176	MMPL	0.85
PF01909	NTP_transf_2	0.85
PF01740	STAS	0.85
PF01609	DDE_Tnp_1	0.85
PF04229	GrpB	0.85
PF01243	Putative_PNPOx	0.85
PF04542	Sigma70_r2	0.85
PF12902	Ferritin-like	0.85
PF11578	DUF3237	0.85
PF12680	SnoaL_2	0.85
PF00149	Metallophos	0.85
PF01037	AsnC_trans_reg	0.85
PF00196	GerE	0.85
PF10025	DUF2267	0.85
PF14520	HHH_5	0.85

COG ID	Name	Functional Category	% Frequency in 117 Family Scaffolds
COG3547	Transposase	Mobilome: prophages, transposons [X]	4.27
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	1.71
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	1.71
COG3328	Transposase (or an inactivated derivative)	Mobilome: prophages, transposons [X]	1.71
COG3293	Transposase	Mobilome: prophages, transposons [X]	0.85
COG5659	SRSO17 transposase	Mobilome: prophages, transposons [X]	0.85
COG5588	Uncharacterized conserved protein, DUF1326 domain	Function unknown [S]	0.85
COG5433	Predicted transposase YbfD/YdcC associated with H repeats	Mobilome: prophages, transposons [X]	0.85
COG5421	Transposase	Mobilome: prophages, transposons [X]	0.85
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	0.85
COG3502	Uncharacterized conserved protein, DUF952 family	Function unknown [S]	0.85
COG3385	IS4 transposase InsG	Mobilome: prophages, transposons [X]	0.85
COG3039	Transposase and inactivated derivatives, IS5 family	Mobilome: prophages, transposons [X]	0.85
COG2409	Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily	General function prediction only [R]	0.85
COG2320	GrpB domain, predicted nucleotidyltransferase, UPF0157 family	General function prediction only [R]	0.85
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.85
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.85
COG1033	Predicted exporter protein, RND superfamily	General function prediction only [R]	0.85
COG0701	Uncharacterized membrane protein YraQ, UPF0718 family	Function unknown [S]	0.85
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.85

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.28 %
All Organisms	root	All Organisms	48.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.28 %
cellular organisms	root	All Organisms → cellular organisms	47.86 %
Viruses	superkingdom	All Organisms → Viruses	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.28 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	47.86 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.28 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	32.48 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.71 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.85 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.28 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	30.77 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1.71 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	1.71 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.85 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.28 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	24.79 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.71 %
unclassified Actinobacteria	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria	0.85 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.85 %
Methylococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales	0.85 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.28 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	4.27 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	3.42 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	2.56 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.71 %
Actinobacteria bacterium RBG_16_68_12	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium RBG_16_68_12	0.85 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.85 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.85 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.85 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	0.85 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.28 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	4.27 %
unclassified Pseudonocardiales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales	2.56 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	2.56 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.71 %
Actinobacteria bacterium RBG_16_68_12	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium RBG_16_68_12	0.85 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.85 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.85 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.85 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	0.85 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.28 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	4.27 %
Pseudonocardiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	2.56 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1.71 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.71 %
Actinobacteria bacterium RBG_16_68_12	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium RBG_16_68_12	0.85 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.85 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.85 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.85 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	0.85 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.28 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	4.27 %
Pseudonocardiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	2.56 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.71 %
unclassified Streptomyces	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces	0.85 %
Actinobacteria bacterium RBG_16_68_12	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium RBG_16_68_12	0.85 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.85 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.85 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.85 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	0.85 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.28 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	4.27 %
Pseudonocardiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	2.56 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.71 %
Streptomyces sp. G1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. G1	0.85 %
Actinobacteria bacterium RBG_16_68_12	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium RBG_16_68_12	0.85 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.85 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.85 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.85 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	0.85 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.85 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003203\|JGI25406J46586_10001678	All Organisms → cellular organisms → Bacteria	10447	Open in IMG/M
3300003203\|JGI25406J46586_10064325	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1172	Open in IMG/M
3300003203\|JGI25406J46586_10202382	Not Available	580	Open in IMG/M
3300003373\|JGI25407J50210_10019564	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1760	Open in IMG/M
3300003373\|JGI25407J50210_10033888	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1318	Open in IMG/M
3300003373\|JGI25407J50210_10047018	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium RBG_16_68_12	1097	Open in IMG/M
3300003373\|JGI25407J50210_10097111	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	728	Open in IMG/M
3300003373\|JGI25407J50210_10185817	Not Available	512	Open in IMG/M
3300005562\|Ga0058697_10012625	All Organisms → cellular organisms → Bacteria	2829	Open in IMG/M
3300005562\|Ga0058697_10125660	All Organisms → cellular organisms → Bacteria	1094	Open in IMG/M
3300005562\|Ga0058697_10213137	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	881	Open in IMG/M
3300005937\|Ga0081455_10087771	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2530	Open in IMG/M
3300005981\|Ga0081538_10005986	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	10823	Open in IMG/M
3300005981\|Ga0081538_10010435	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	7616	Open in IMG/M
3300005981\|Ga0081538_10015542	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	5885	Open in IMG/M
3300005981\|Ga0081538_10161451	Not Available	995	Open in IMG/M
3300005981\|Ga0081538_10195143	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	842	Open in IMG/M
3300006169\|Ga0082029_1638052	Not Available	556	Open in IMG/M
3300009100\|Ga0075418_10736332	Not Available	1064	Open in IMG/M
3300009789\|Ga0126307_10007830	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	7637	Open in IMG/M
3300009789\|Ga0126307_10018602	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	5212	Open in IMG/M
3300009789\|Ga0126307_10023212	All Organisms → cellular organisms → Bacteria	4711	Open in IMG/M
3300009789\|Ga0126307_10032066	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4046	Open in IMG/M
3300009789\|Ga0126307_10061539	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2944	Open in IMG/M
3300009789\|Ga0126307_10080747	Not Available	2567	Open in IMG/M
3300009789\|Ga0126307_10115680	Not Available	2132	Open in IMG/M
3300009789\|Ga0126307_10126984	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2034	Open in IMG/M
3300009789\|Ga0126307_10446885	Not Available	1043	Open in IMG/M
3300009840\|Ga0126313_10014710	All Organisms → cellular organisms → Bacteria	5067	Open in IMG/M
3300009840\|Ga0126313_10041747	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3198	Open in IMG/M
3300009840\|Ga0126313_10057078	All Organisms → cellular organisms → Bacteria	2771	Open in IMG/M
3300009840\|Ga0126313_10092905	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	2206	Open in IMG/M
3300009840\|Ga0126313_10199545	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1535	Open in IMG/M
3300009840\|Ga0126313_10570130	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	910	Open in IMG/M
3300009840\|Ga0126313_11450974	Not Available	569	Open in IMG/M
3300010036\|Ga0126305_10021399	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3417	Open in IMG/M
3300010036\|Ga0126305_10410858	All Organisms → cellular organisms → Bacteria	893	Open in IMG/M
3300010036\|Ga0126305_10886000	Not Available	609	Open in IMG/M
3300010036\|Ga0126305_11265219	Not Available	509	Open in IMG/M
3300010037\|Ga0126304_10473201	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	840	Open in IMG/M
3300010037\|Ga0126304_10575321	Not Available	758	Open in IMG/M
3300010038\|Ga0126315_10163811	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1323	Open in IMG/M
3300010038\|Ga0126315_10292297	Not Available	1004	Open in IMG/M
3300010038\|Ga0126315_10295730	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	998	Open in IMG/M
3300010038\|Ga0126315_10520300	Not Available	761	Open in IMG/M
3300010040\|Ga0126308_10016643	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3879	Open in IMG/M
3300010040\|Ga0126308_10028244	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	3105	Open in IMG/M
3300010040\|Ga0126308_11091553	Not Available	562	Open in IMG/M
3300010041\|Ga0126312_10033185	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	3448	Open in IMG/M
3300010041\|Ga0126312_10134887	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. G1	1707	Open in IMG/M
3300010042\|Ga0126314_10433035	All Organisms → cellular organisms → Bacteria	950	Open in IMG/M
3300010042\|Ga0126314_10803755	Not Available	692	Open in IMG/M
3300010044\|Ga0126310_11504538	Not Available	552	Open in IMG/M
3300010166\|Ga0126306_10007848	All Organisms → cellular organisms → Bacteria	6598	Open in IMG/M
3300010166\|Ga0126306_10120933	Not Available	1916	Open in IMG/M
3300010166\|Ga0126306_11180739	Not Available	628	Open in IMG/M
3300010999\|Ga0138505_100036827	All Organisms → cellular organisms → Bacteria	682	Open in IMG/M
3300012939\|Ga0162650_100013603	Not Available	1094	Open in IMG/M
3300012941\|Ga0162652_100003682	Not Available	1562	Open in IMG/M
3300014487\|Ga0182000_10000339	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	7879	Open in IMG/M
3300014487\|Ga0182000_10129614	Not Available	887	Open in IMG/M
3300014487\|Ga0182000_10135456	Not Available	873	Open in IMG/M
3300018000\|Ga0184604_10012512	Not Available	1838	Open in IMG/M
3300018061\|Ga0184619_10399820	Not Available	621	Open in IMG/M
3300018465\|Ga0190269_10788344	Not Available	681	Open in IMG/M
3300018466\|Ga0190268_10006673	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	2926	Open in IMG/M
3300018469\|Ga0190270_11234420	Not Available	787	Open in IMG/M
3300018476\|Ga0190274_11537354	Not Available	757	Open in IMG/M
3300019377\|Ga0190264_11137157	Not Available	641	Open in IMG/M
3300019767\|Ga0190267_10842751	Not Available	617	Open in IMG/M
3300026691\|Ga0208348_100041	Not Available	1532	Open in IMG/M
3300026790\|Ga0208710_106364	Not Available	562	Open in IMG/M
3300027718\|Ga0209795_10093942	Not Available	862	Open in IMG/M
3300027750\|Ga0209461_10031605	Not Available	1011	Open in IMG/M
3300028719\|Ga0307301_10148043	Not Available	755	Open in IMG/M
3300028722\|Ga0307319_10190513	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	670	Open in IMG/M
3300028722\|Ga0307319_10251811	Not Available	581	Open in IMG/M
3300028744\|Ga0307318_10004105	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4707	Open in IMG/M
3300028744\|Ga0307318_10089091	All Organisms → Viruses → Predicted Viral	1038	Open in IMG/M
3300028744\|Ga0307318_10110206	All Organisms → cellular organisms → Bacteria	934	Open in IMG/M
3300028744\|Ga0307318_10346103	Not Available	523	Open in IMG/M
3300028754\|Ga0307297_10321336	Not Available	562	Open in IMG/M
3300028771\|Ga0307320_10043157	Not Available	1657	Open in IMG/M
3300028771\|Ga0307320_10349419	Not Available	590	Open in IMG/M
3300028771\|Ga0307320_10474000	Not Available	505	Open in IMG/M
3300028796\|Ga0307287_10124321	Not Available	977	Open in IMG/M
3300028814\|Ga0307302_10574085	Not Available	560	Open in IMG/M
3300030510\|Ga0268243_1011604	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1642	Open in IMG/M
3300031092\|Ga0308204_10346125	Not Available	510	Open in IMG/M
3300031548\|Ga0307408_100055986	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2858	Open in IMG/M
3300031548\|Ga0307408_100078587	All Organisms → cellular organisms → Bacteria	2460	Open in IMG/M
3300031548\|Ga0307408_101483939	Not Available	641	Open in IMG/M
3300031548\|Ga0307408_102467931	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	505	Open in IMG/M
3300031731\|Ga0307405_10392173	Not Available	1084	Open in IMG/M
3300031731\|Ga0307405_10553544	Not Available	931	Open in IMG/M
3300031731\|Ga0307405_11067029	Not Available	692	Open in IMG/M
3300031731\|Ga0307405_11234126	Not Available	648	Open in IMG/M
3300031852\|Ga0307410_11474056	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	599	Open in IMG/M
3300031852\|Ga0307410_12066667	Not Available	509	Open in IMG/M
3300031901\|Ga0307406_11059394	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	698	Open in IMG/M
3300031903\|Ga0307407_10019641	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3446	Open in IMG/M
3300031903\|Ga0307407_10221686	All Organisms → cellular organisms → Bacteria	1279	Open in IMG/M
3300031903\|Ga0307407_10251595	All Organisms → cellular organisms → Bacteria	1211	Open in IMG/M
3300031903\|Ga0307407_10628091	Not Available	802	Open in IMG/M
3300031995\|Ga0307409_100699623	Not Available	1013	Open in IMG/M
3300032002\|Ga0307416_100161597	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	2071	Open in IMG/M
3300032002\|Ga0307416_101040489	Not Available	922	Open in IMG/M
3300032002\|Ga0307416_101634488	Not Available	749	Open in IMG/M
3300032002\|Ga0307416_102525868	Not Available	612	Open in IMG/M
3300032004\|Ga0307414_10070236	All Organisms → cellular organisms → Bacteria	2521	Open in IMG/M
3300032005\|Ga0307411_10123807	Not Available	1876	Open in IMG/M
3300032126\|Ga0307415_100438211	Not Available	1126	Open in IMG/M
3300032126\|Ga0307415_100945845	Not Available	797	Open in IMG/M
3300032159\|Ga0268251_10128562	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	934	Open in IMG/M
3300034131\|Ga0334911_043778	Not Available	641	Open in IMG/M
3300034174\|Ga0334932_005885	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1981	Open in IMG/M
3300034377\|Ga0334931_104985	Not Available	662	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	61.54%
Host-Associated	Host-Associated	38.46%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	59.83%
Plants	Host-Associated → Plants	38.46%
Aquatic	Environmental → Aquatic	1.71%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	57.27%
Rhizosphere	Host-Associated → Plants → Rhizosphere	21.37%
Roots	Host-Associated → Plants → Roots	8.55%
Phylloplane	Host-Associated → Plants → Phylloplane	4.27%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.42%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	2.56%
Sediment	Environmental → Aquatic → Sediment	1.71%
Phyllosphere	Host-Associated → Plants → Phyllosphere	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	55.56%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	21.37%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	8.55%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	4.27%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.42%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	2.56%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.71%
Loam	Environmental → Terrestrial → Soil → Loam	1.71%
Phylloplane/Leaf Surface	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	52.99%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	21.37%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	8.55%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	4.27%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.42%
Desert	Environmental → Terrestrial → Soil → Unclassified → Desert	2.56%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	2.56%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.71%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.71%
Unclassified	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	31.62%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	20.51%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	17.09%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere	8.55%
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	4.27%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.42%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	3.42%
Sub-Biocrust Soil	Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil	2.56%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	2.56%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.71%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.71%
Termite Nest	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Termite Nest	0.85%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.85%
Agave	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified → Agave	0.85%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003203	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2	Host-Associated	Open in IMG/M
3300003373	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300005562	Agave microbial communities from Guanajuato, Mexico - As.Ma.e	Host-Associated	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300005981	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300006169	Termite nest microbial communities from Madurai, India	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300010999	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t3i015	Environmental	Open in IMG/M
3300012939	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t1i015	Environmental	Open in IMG/M
3300012941	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t4i015	Environmental	Open in IMG/M
3300014487	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG	Environmental	Open in IMG/M
3300018000	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_coex	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300026691	Grasslands soil microbial communities from Gorham, Kansas, USA that are Nitrogen fertilized -NN621 (SPAdes)	Environmental	Open in IMG/M
3300026790	Grasslands soil microbial communities from Gorham, Kansas, USA that are Nitrogen fertilized -NN607 (SPAdes)	Environmental	Open in IMG/M
3300027718	Agave microbial communities from Guanajuato, Mexico - Or.Ma.rz (SPAdes)	Host-Associated	Open in IMG/M
3300027750	Agave microbial communities from Guanajuato, Mexico - As.Ma.rz (SPAdes)	Host-Associated	Open in IMG/M
3300028719	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_182	Environmental	Open in IMG/M
3300028722	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_368	Environmental	Open in IMG/M
3300028744	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_367	Environmental	Open in IMG/M
3300028754	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_157	Environmental	Open in IMG/M
3300028771	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369	Environmental	Open in IMG/M
3300028796	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300030510	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG (v2)	Environmental	Open in IMG/M
3300031092	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_367 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated	Open in IMG/M
3300031901	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2	Host-Associated	Open in IMG/M
3300031903	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1	Host-Associated	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032004	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3	Host-Associated	Open in IMG/M
3300032005	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1	Host-Associated	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300032159	Agave microbial communities from Guanajuato, Mexico - As.Ma.e (v2)	Host-Associated	Open in IMG/M
3300034131	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 7HMS	Environmental	Open in IMG/M
3300034174	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 28HNS	Environmental	Open in IMG/M
3300034377	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 27HNS	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25406J46586_100016786	3300003203	Tabebuia Heterophylla Rhizosphere	MVDDQAVLAFLQHLDLVLSEALRGDDQQRLRRLTMIHALVMALLADPQELDEALRRAAARLAELDS*
JGI25406J46586_100643253	3300003203	Tabebuia Heterophylla Rhizosphere	MVDDQAVLAFLQHLDLVLSEALRGNDQQRLRRLTTTHALVMALLADPQELDQGLRQAAARLAELD*
JGI25406J46586_102023821	3300003203	Tabebuia Heterophylla Rhizosphere	MADDQAVLAFLQHLDLVLSEVLRGDDQQRLRRLAMIHALVMAVLADPQELDEALRQAAARLAELDS*
JGI25407J50210_100195642	3300003373	Tabebuia Heterophylla Rhizosphere	MVDDQAVLAFLQHLDLVLSAALRGDEQQRLRRLTMTHALVMALLADPQELDQALRQAAARLAELDS*
JGI25407J50210_100338883	3300003373	Tabebuia Heterophylla Rhizosphere	MVDDQAVLTFLQHLDLALSAALRGDDQQRLRRLTMTHALVMALLADPQELDPALRQAAARLAELDS*
JGI25407J50210_100470182	3300003373	Tabebuia Heterophylla Rhizosphere	MADDQAVLAFLQHLDLVLSEALRGDEQQRLRRLTTTHALVMALLADPQELDQALRQAAARLAELDS*
JGI25407J50210_100971112	3300003373	Tabebuia Heterophylla Rhizosphere	MADDQAVLAFLQHLDLVLSEALRGDEQQRLRRLRMTHALVMALLADPEGLDQALRQ
JGI25407J50210_101858171	3300003373	Tabebuia Heterophylla Rhizosphere	MADDQAVLAFLQHLDLVLAAALRGDEPQRLGRLTMIHALVMALLADPQELDQALRQAAARLAELDT*
Ga0058697_100126252	3300005562	Agave	MVDDQAVLAFLQHLDLVLAAALRGDEQQRLRRLTTTHALVMALLADPQELDQTLRQAAARLAELDS*
Ga0058697_101256602	3300005562	Agave	MVDDQVVIVFLRQLDRVLSEALSGDEQQRLRRLTMTHALVMALLADPPHLDQALRQAAAHLTQLDP*
Ga0058697_102131372	3300005562	Agave	MVDDQAVLAFLQHLDLVLSEALRGDEQQRLRRLTMTHALVMALLADPQELDQALRQA
Ga0081455_100877712	3300005937	Tabebuia Heterophylla Rhizosphere	MVDDQAVLEFLQHLDLVLSEALRGDEQQRLRRLTMIHALVMALLADPQELDQALRQAAARLAELDS*
Ga0081538_100059865	3300005981	Tabebuia Heterophylla Rhizosphere	MVDDQAVLAFLQHLDLALSAALRGDEPQRLRRLTMTHALVMALLADPQELDQTLRQAAAHLAELDS*
Ga0081538_100104353	3300005981	Tabebuia Heterophylla Rhizosphere	MVDDQAVLVFLQHLDLVLSAALRGDEQQRLRRLSMTHALVMALLADPQELDPALRQVAARLAELDT*
Ga0081538_100155427	3300005981	Tabebuia Heterophylla Rhizosphere	MADDQAVLAFLQHLDLVLSEALRGDEQQRLRRLRMTHALVMALLADPEGLDQALRQAAARLAEPGS*
Ga0081538_101614512	3300005981	Tabebuia Heterophylla Rhizosphere	MVDDQAVLAFLQHLDLVLSEALRGDEQRLRRLTMTQTLVMALLADPQDLDQALRQAAARLAELDS*
Ga0081538_101951431	3300005981	Tabebuia Heterophylla Rhizosphere	MVDDQAVLVFLQHLDLVLSEAVRGDEQQRLRRLTITHALVMALLADPEELDQGLRQAAARLAELDS*
Ga0082029_16380522	3300006169	Termite Nest	MVDDQAVLAFLQHLDLVLSESLRGDEQQRLRRLTMIHALVMALLADPQELDQALRQAAARLAELDF*
Ga0075418_107363321	3300009100	Populus Rhizosphere	MVDDQAVLAFLQHLDLVLSEALRGDEQQRLRRLTMIHALVMVLLADPQELDQALRQAVGRLAELDS*
Ga0126307_100078301	3300009789	Serpentine Soil	MVDDQAVLAFLQHLDLVLSEARRGDEQQRLGRLTMIHALVMALLADPQELDEALRQAAARLAELDS*
Ga0126307_100186026	3300009789	Serpentine Soil	MVDEQAVLAFLQHLDLVLSEALRGDEQQRLRRVTMIHALVMALLADPQELDQALRQAAARLAELDS*
Ga0126307_100232127	3300009789	Serpentine Soil	LQHLDLVLSEALRSDEQQRLRRLTMTHALVMALLTDPQELDQALRQAAARLAELDS*
Ga0126307_100320663	3300009789	Serpentine Soil	MVDDQAVLAFLQHLDLVLSEALRGDEQQRLRRLTMTHALVMALLADPQELDQALRQAAARLAELDS*
Ga0126307_100615392	3300009789	Serpentine Soil	MVDDQAVLAFLQHLDLVLSEALRSDDQQRLRRLTMIHALVMALLADPKELDQALRQAAARLAELDS*
Ga0126307_100807475	3300009789	Serpentine Soil	MVDDQAVLAFLQHLDLVLSEALRGDEQQRLRRLTMIHALVMALLADPQELDQALRQAAARLAELDS*
Ga0126307_101156801	3300009789	Serpentine Soil	MVDDQAVLAFLQHLDLVLSEALRGDDQQRLRRLTMIHALVMALLADPQELDQALRQAAARLAELDS*
Ga0126307_101269841	3300009789	Serpentine Soil	MVDDQAVLAFLQHLDLVLSEARRGDDQQRLRRLTMIHALVMALLADPQELDQALRQAAARLAELDS*
Ga0126307_104468853	3300009789	Serpentine Soil	MVDDQAVLAFLQHLDLVLSEALRSDEQQRLRRLTMTHALVMALLADPQGLDQALRQAAARLAELDS*
Ga0126313_100147105	3300009840	Serpentine Soil	MVDDQAVLAFLQHLDLVLSAALRGDEQQRLRRLTMIHALVMALLADPQHLDQALRQAAARLAELDS*
Ga0126313_100417472	3300009840	Serpentine Soil	MVDDQAVLAFLQHLDLVLAAALRGDEQQRLRRLTMTHALVMALLADPQELDQALRQAAARLAELDS*
Ga0126313_100570783	3300009840	Serpentine Soil	MVDDQAVLAFLQHLDLVLSEALRSDEQQRLRRLTMTHALVMALLADPQELDQALRQAAARLAELDS*
Ga0126313_100929054	3300009840	Serpentine Soil	MVDDQAVIAFLRQLDRALSEALRGDEQQRLRRLTMTHALVMALLADPLQLDQALRQAAARLTQLDS*
Ga0126313_101995451	3300009840	Serpentine Soil	MVDDQAVLAFLQHLDLVLSEALRGDEQQRLRRLTMTHTLVMALLADPQELDQALRQAAARLAN
Ga0126313_105701301	3300009840	Serpentine Soil	MADDQAVLAFLQHLDLVLSAALRGDEQRRLRRLTMTHALVMALLADPQELDQALRQAAARLAELDS*
Ga0126313_114509741	3300009840	Serpentine Soil	AFLQHLDLVLSEALRGDEQQRLRRLTMTHALVMALLADPQELDPALRQAAARLAELDS*
Ga0126305_100213991	3300010036	Serpentine Soil	MVDDQAVLAFLQHLDLVLSEALRSDEQQRLRRLTMIHALVMALLADPKELDQALRQAAARLAELDS*
Ga0126305_104108582	3300010036	Serpentine Soil	MVDDQAVLAFLQHLDLVLSEARRGDEQRRLRRLTMIHALVMALLADPQELDQALRQAAARLAELDS*
Ga0126305_108860002	3300010036	Serpentine Soil	LQHLDLVLSEALRGDEQQRLRRLTMTHTLVMALLADPQELDQALRQAAARLANMDS*
Ga0126305_112652191	3300010036	Serpentine Soil	MVDDQAVLAFLQHLDLVLSEALRGDEQQRLRRLTMTHTLVMALLADPQDLDQALRQAAARLANMDS
Ga0126304_104732011	3300010037	Serpentine Soil	LQHLDLVLSEALRGDEQQQLRRLTMIHALVMALLADPQELDQALRQAAARLAELDS*
Ga0126304_105753211	3300010037	Serpentine Soil	VLAFLQHLDLVLSEALRGDEQQRLRRLTMIHALVMALLADPQELDQALRQAAARLAELDS
Ga0126315_101638112	3300010038	Serpentine Soil	MVDDQAVLAFLQHLDLVLSEALRRDEQQRLRRLTMTHALVMALLADPQELDQALRQAAARLAELDS*
Ga0126315_102922971	3300010038	Serpentine Soil	MVDDQAVLAFLQHLDLVLSEALRGDEQQRLRRLTMTHALVMALLADPQELDPALRQAAARLAELDS*
Ga0126315_102957301	3300010038	Serpentine Soil	SLMVDDQAVLAFLQHLDLVLSEALRGDEQQRLRRLTMTHTLVMALLADPQDLDQALRQAAARLANMDS*
Ga0126315_105203002	3300010038	Serpentine Soil	MVDDQAVLAFLQHLDLVLSAALRGDEQQRLRRLTMIHALVMALLADPQGLDQALRQAAARLAELDS*
Ga0126308_100166437	3300010040	Serpentine Soil	MVDDQAVLAFLQHLDLVLSEALRGDDQQRLRRLTMIHALVMALLADPQELDEALRQAAARLAELDS*
Ga0126308_100282444	3300010040	Serpentine Soil	MVDDQAVLAFLQHLDLVLSAALRGDEQQRLRRLTMTHALVMALLADPQELDQALRQAA
Ga0126308_110915531	3300010040	Serpentine Soil	MVDDQAVLAFLQHLDLVLSEALRGDEQQRLRRLTMTHTLVMALLADPQELDQALRQAAARLANMDS*
Ga0126312_100331852	3300010041	Serpentine Soil	MVDDQAVIAFLRQLDRALSEALRGDKQKRLRRLTMTHALVMALLADPLQLDQALRQAAARLTQLDS*
Ga0126312_101348874	3300010041	Serpentine Soil	MVDDQAVLAFLQHLDLVLSEALRGDEQQRLRRLTMTHALVMALLADPQELDQGLRQAAARLAQLDS*
Ga0126314_104330351	3300010042	Serpentine Soil	MVDDQAVLAFLQHLDLVLSAALRGDEQQRLRRLTMTHALVMALLADPQELDQALRQAAARLAESDS*
Ga0126314_108037551	3300010042	Serpentine Soil	SLMVDDQAVLAFLQHLDLVLSEALRGDEQQRLRRLTMTHTLVMALLADPQELDQALRQAAARLANMDS*
Ga0126310_115045381	3300010044	Serpentine Soil	MVDDQAVLAFLQHLDLVLAAALRGDEQQRLRRLTMTHALVMALLADPQELDQALRQAAARLAE
Ga0126306_100078485	3300010166	Serpentine Soil	MVDDQAVLTFLQHLDLVLSEALRSDEQQRLRRLTMTHALVMALLTDPQELDQALRQAAARLAELDS*
Ga0126306_101209331	3300010166	Serpentine Soil	MVDDQAVLVFLQHLDLVLSEALRSDEQQRLRRLTMTHALVMALLADPQELDQALRQAAARLAELDS*
Ga0126306_111807391	3300010166	Serpentine Soil	DQAVLAFLQHLDLVLSEARRSDEQQRLGRLTMIHALVMALLADPQELDEALRQAAARLAELDS*
Ga0138505_1000368272	3300010999	Soil	MADDQAVLAFLQHLDLVLSEALRSDEQQRLRRLTMTHALVMALLADPQELDQALRQAAARLAELDS*
Ga0162650_1000136032	3300012939	Soil	MVDDQAVLAFLQHLDLVLSEALRGDDQQRLRRLTMIHALVMALLADPQELDQALRQASARLAELDS*
Ga0162652_1000036822	3300012941	Soil	MVDDQAVLAFLQHLDLVLSEARRGDEQQRLRRLTMTHALVMALLADPQELDQALRQAAARLAELDS*
Ga0182000_100003397	3300014487	Soil	MADDQAVLTFLQHLDLVLSEALRGHEQQRLRRLTTIHALVMALLAEPQQLDRALRQAAARLAELDS*
Ga0182000_101296143	3300014487	Soil	MVDDQAVLAFLQHLDLVLAAALRGDEQQRLRRLTMTHALVMALLADPQELDQALRQA
Ga0182000_101354561	3300014487	Soil	MVDDQAVLTFLQHLDLVLSSALRGDDQQRLRRLAMTHALVMALLADPQELDQALRQAAARLAELDS*
Ga0184604_100125121	3300018000	Groundwater Sediment	MVDDQAVLAFLQHLDLVLSEALRGDEQQRLRRLTMIHALVMALLADPQELDQALRQAAARLAELDS
Ga0184619_103998201	3300018061	Groundwater Sediment	MADDQAVLAFLQHLDLVLSEALRSDEQQRLRRLTMTHALVMALLADPQELDQALRQAAARLAELDS
Ga0190269_107883441	3300018465	Soil	MADDQAVLAFLQHLDLVLSETLRGDEQQRLRRLTMTHALVMALLADPQELDQALRQAAARLAELDS
Ga0190268_100066731	3300018466	Soil	AFLQHLDLVLSEARRGDEQQRLRRLTMTHALVMALLADPQELDQALRQAAARLAELDF
Ga0190270_112344201	3300018469	Soil	MVDDQAVLAFLQHLDLVLSEALRVDEQQRLRRLTMIHALVMALLADPQELDQALRQAAARLAELDS
Ga0190274_115373541	3300018476	Soil	MSQTGSLMVDDQAVLAFLQHLDLALSEALRGDEQQRLRRLTMTHALVMALLTDPQELDQALRQAAARLAELDS
Ga0190264_111371571	3300019377	Soil	MVDDQAVLAFLQHLDLVLSEALRGDEQQRLRRLTMTHTLVMALLADPQELDQALRQAAARLAELDS
Ga0190267_108427511	3300019767	Soil	MVDDQAVLVFLQHLDLVLSEALRGDDQQRLRRLTMIHALVMALVADPQELDQALRQAAARLAELDS
Ga0208348_1000411	3300026691	Soil	LAFLQHLDLVLSAALRGDEQQRLRRLSMTHALVMALLADPQELDQALRQAAARLAELDS
Ga0208710_1063641	3300026790	Soil	MVDDQAVLAFLQHLDLVLAAALRGDEQQRLRRLTTTHALVMALLADPQELDQTLRQAAARLAELNS
Ga0209795_100939421	3300027718	Agave	MVDDQAVLAFLQHLDLVLAAALRGDEQQRLRRLTMTHALVMALLADPQELDQALRQAAARLAELDS
Ga0209461_100316052	3300027750	Agave	MVDDQAVLAFLQHLDLVLSEALRGDEQQRLRRLTMTHALVMALLADPQELDQALRQAAARLAELDS
Ga0307301_101480431	3300028719	Soil	MVDDQAVLVFLQHLDLVLSEALRSDEQQRVRRLTMIHALVMALLADPQELDQALRQAAARLAELDS
Ga0307319_101905132	3300028722	Soil	VDDQAVLAFLQHLDLVLSEALRSDEQQRLRRLTMTHALVMALLADPQKLDQALRQAAAHLAELDS
Ga0307319_102518111	3300028722	Soil	MVDDQAVLAFLQHLDLVLSEALRSDEQQRLGRLTMTHALVMALLADPQELDQALRQAAARLAELDS
Ga0307318_100041052	3300028744	Soil	MVDDQAVLAFLQHLDLVLSEALRSDEQQRLRRLTMTHALVMALLADPQELDQALRQAAARLAELDS
Ga0307318_100890912	3300028744	Soil	MADDQAVLTFLQHLDLVLSEALRGDELQRLRRLTMTHALVMALLADPQELDQALRQAAARLAELDS
Ga0307318_101102062	3300028744	Soil	VPQTGSLMVDDQAVLAFLQHLDLVLSEALRGDEQQRLRRLTMIHALVMALLADPQELDQALRQAAARLAELDS
Ga0307318_103461031	3300028744	Soil	MVDDQAVLAFLQHLDLVLSEALRSDEQQRLRRLTMTHALVMALLADPQKLDQALRQAAARLAELDS
Ga0307297_103213361	3300028754	Soil	MVDDQAVLVFLQHLDLVLSEALRGDEQQRLRRLTMIHALVMALLADPQELDQALRQAAARLAELDS
Ga0307320_100431572	3300028771	Soil	MVDDQAVLVFLQHLDLVLSEALRSDEQQRVRRLTMIHALVMALLADPQKLDQALRQAAARLAELDS
Ga0307320_103494191	3300028771	Soil	MVDDQAVLAFLQHLDLVLSEALRSDEQQRLGRLTMTHALVMALLADPQELDQALR
Ga0307320_104740001	3300028771	Soil	MVDDQAVLAFLQHLDLVLSEALRSDEQQRLRRLTMIHALVMALLADPQELDQALRQAAARLAELDS
Ga0307287_101243213	3300028796	Soil	MVDDQAVLAFLQHLDLVLSEALRGDEQQRLRRLTIIHALVMALLADPQELDQALRQAAARLAELDS
Ga0307302_105740851	3300028814	Soil	MVDDQAVLAFLQHLDLVLSEALRSDEQQRLRRLTMTHALVMALLADQQELDQALRQAAARLAELDS
Ga0268243_10116041	3300030510	Soil	MADDQAVLTFLQHLDLVLSEALRGHEQQRLRRLTTIHALVMALLAEPQQLDRALRQAAARLAELDS
Ga0308204_103461251	3300031092	Soil	IGSLMVDDQAVLAFLQHLDLVLSEALRGDDQQRLRRLTMIHALVMALLADPQELDQALRQAAARLAELDS
Ga0307408_1000559861	3300031548	Rhizosphere	MVDDQAVLAFLQHLDLVLSEALRGDEQQRLRRLTMIHALVMALLADPQELDEALRQAAARLAELDS
Ga0307408_1000785872	3300031548	Rhizosphere	MVDDQAVLAFLQHLDLVLSEARRGDEQRRLRRLTMIHALVMALLADPQELDQALRQAAARLAELDS
Ga0307408_1014839392	3300031548	Rhizosphere	MVDDQAVLAFLQHLDLVLSEALRGDEQQRLRRLTMTHTLVMALLADPQELDQALRQAAARLANMDS
Ga0307408_1024679311	3300031548	Rhizosphere	MVDDQAVLAFLQHLDLVLSEARRGDDQRRLRRLTMIHALVMALLADPQELDQALRQ
Ga0307405_103921732	3300031731	Rhizosphere	MVDDQAVLAFLQHLDLVLSEALRGDDQQRLRRLTMTHALVMALLADPQELDQALRQAAARLAELDS
Ga0307405_105535442	3300031731	Rhizosphere	MADDQAVLAFLQHLDLVLSAALRGDEQRRLRRLTMTHALVMALLADPQELDQALRQAAARLAELDS
Ga0307405_110670291	3300031731	Rhizosphere	MVDDQAVLAFLQHLDLVLSEALRSNEQQRLRRLTMTHALVMALLADPQELDQALRQAAARLAELDS
Ga0307405_112341262	3300031731	Rhizosphere	MSQTGSLMVDDQAVLAFLQHLDLVLWAALRGDEQQRLRRLTMTHALVMALLADPQHLDQALRQAAARLAELDS
Ga0307410_114740561	3300031852	Rhizosphere	MVGDQAVIAFLRQLDRALSEALRGDEQQRLRRLTMTHALVMALLADPLQLDQALRQAAA
Ga0307410_120666671	3300031852	Rhizosphere	MVDDQAVLVFLQHLDLVLSEALRGDEQQRLRRLTMIHALVMALLADPQDLDQALRQAAARLAELDS
Ga0307406_110593942	3300031901	Rhizosphere	MVDDQAVLAFLQHLDLVLSEARRGDDQRRLRRLTMIHALVMALLADPQELDQALRQAAARLAELDS
Ga0307407_100196415	3300031903	Rhizosphere	MVDDQAVLAFLQHLDLVLSEALRGDEQQRLRRLTITHALVMALLADPQELDQGLRQAAARLAELDS
Ga0307407_102216862	3300031903	Rhizosphere	MVDDQAVLAFLQHLDLVLSEALRSDEQQRLRRLTMTHALVMALLADPQELDQAL
Ga0307407_102515953	3300031903	Rhizosphere	MVDDQAVLAFLQHLDLVLSEARRGDDQQRLRRLTMIHALVMALLADPQELDQALRQAAARLAELDS
Ga0307407_106280912	3300031903	Rhizosphere	MVDDQAVLAFLQHLDLVLSEALRGDEQQRLRRLTMIHALVMALLADPQHLDQALRQAAARLAEL
Ga0307409_1006996231	3300031995	Rhizosphere	MVDDQAVLAFLQHLDLVLSEALRGDEQQRLRRLTMIHALVMALLADPQHLDQALRQAAARLAELDS
Ga0307416_1001615973	3300032002	Rhizosphere	MVGDQAVIAFLRQLDRALSEALRGDEQQRLRRLTMTHALVMALLADPLQLDQALRQAAARLTQLDS
Ga0307416_1010404892	3300032002	Rhizosphere	MADDQAVLAFLQHLDLVLSEALRGDEQQRLRRLTMTHALVMALLADPLADPQELDQALRQAAARLAELDS
Ga0307416_1016344882	3300032002	Rhizosphere	MSSRDVPRQAGSPMVDDQAVLAFLQHLDLVLSEALRSNEQQRLRRLTMTHALVMALLADPQELDQALRQAAARLAELDS
Ga0307416_1025258682	3300032002	Rhizosphere	MVDDQAVLAFLQHLDLVLSEALRGDEQQRLRRLTMTHALVMALLTDPQELDQALRQAAARLAELDS
Ga0307414_100702364	3300032004	Rhizosphere	TGSLMVDDQAVLAFLQHLDLVLSEARRGDEQRRLRRLTMIHALVMALLADPQELDQALRQAAARLAELDS
Ga0307411_101238071	3300032005	Rhizosphere	SLMVDDQAVLAFLQHLDLVLSEALRGDEQQRLRRLTMIHALVMALLADPQELDEALRQAAARLAELDS
Ga0307415_1004382111	3300032126	Rhizosphere	MVDDQAVLAFLQHLDLVLSEALRSDEQQRLGRLTMIHALVMALLADPQELDQALRQAAARLAELDS
Ga0307415_1009458451	3300032126	Rhizosphere	MVDDQAVLAFLQHLDLVLWEALRSDEQQRLRRLTMTHALVMALLADPQELDQALRQAAARLAELDS
Ga0268251_101285622	3300032159	Agave	MVDDQVVIVFLRQLDRVLSEALSGDEQQRLRRLTMTHALVMALLADPPHLDQALRQAAAHLTQLDP
Ga0334911_043778_340_540	3300034131	Sub-Biocrust Soil	MADDQAVLAFLQHLDLVLSEALRGDEQQRLRRLTTTHALVMALLADPQELDQALRQAAARLAELDS
Ga0334932_005885_665_865	3300034174	Sub-Biocrust Soil	MVDDQAVLAFLQHLDLVLSEALRGDEPQRLRRLTMTHTLVMALLADPQELDQTLRQAAARLAELDS
Ga0334931_104985_339_539	3300034377	Sub-Biocrust Soil	MVDDQAVLAFLQHLDLVLSEALRGDEQQRLRRLTTIHALVMAVLADPQELDQALRLAAARLAELDS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F077746

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences