Metagenome / Metatranscriptome Family F060671

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F060671
Family Type	Metagenome / Metatranscriptome
Number of Sequences	132
Average Sequence Length	45 residues
Representative Sequence	VSLLMLAVVALFPVVLLALLLITSGLEGRVVGDPTPRVGAGERPGPRDRR
Number of Associated Samples	81
Number of Associated Scaffolds	132

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	50.00 %
% of genes near scaffold ends (potentially truncated)	25.00 %
% of genes from short scaffolds (< 2000 bps)	79.55 %
Associated GOLD sequencing projects	74
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.43

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (91.667 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (18.939 % of family members)
Environment Ontology (ENVO)	Unclassified (27.273 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (32.576 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 29.49% β-sheet: 0.00% Coil/Unstructured: 70.51%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.43
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.43
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 132 Family Scaffolds
PF03167	UDG	40.91
PF02811	PHP	34.85
PF01523	PmbA_TldD	3.79
PF13408	Zn_ribbon_recom	1.52
PF00239	Resolvase	1.52
PF02371	Transposase_20	1.52
PF00293	NUDIX	1.52
PF12705	PDDEXK_1	1.52
PF05552	TM_helix	0.76
PF13581	HATPase_c_2	0.76
PF05362	Lon_C	0.76
PF10944	DUF2630	0.76
PF08281	Sigma70_r4_2	0.76
PF05239	PRC	0.76
PF13302	Acetyltransf_3	0.76
PF07508	Recombinase	0.76
PF01568	Molydop_binding	0.76

COG ID	Name	Functional Category	% Frequency in 132 Family Scaffolds
COG0692	Uracil-DNA glycosylase	Replication, recombination and repair [L]	40.91
COG1573	Uracil-DNA glycosylase	Replication, recombination and repair [L]	40.91
COG3663	G:T/U-mismatch repair DNA glycosylase	Replication, recombination and repair [L]	40.91
COG0312	Zn-dependent protease PmbA/TldA or its inactivated homolog	General function prediction only [R]	3.79
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	2.27
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	1.52
COG3547	Transposase	Mobilome: prophages, transposons [X]	1.52
COG0466	ATP-dependent Lon protease, bacterial type	Posttranslational modification, protein turnover, chaperones [O]	0.76
COG0668	Small-conductance mechanosensitive channel	Cell wall/membrane/envelope biogenesis [M]	0.76
COG1067	Predicted ATP-dependent protease	Posttranslational modification, protein turnover, chaperones [O]	0.76
COG1750	Predicted archaeal serine protease, S18 family	General function prediction only [R]	0.76
COG3264	Small-conductance mechanosensitive channel MscK	Cell wall/membrane/envelope biogenesis [M]	0.76
COG3480	Predicted secreted protein YlbL, contains PDZ domain	Signal transduction mechanisms [T]	0.76

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	93.18 %
Unclassified	root	N/A	6.82 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	91.67 %
Unclassified	root	N/A	6.82 %
Viruses	superkingdom	All Organisms → Viruses	1.52 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	91.67 %
Unclassified	root	N/A	6.82 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.52 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	26.52 %
Unclassified	root	N/A	6.82 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.27 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.52 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.52 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	21.97 %
Unclassified	root	N/A	6.82 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	4.55 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	1.52 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	1.52 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.52 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	12.12 %
Unclassified	root	N/A	6.82 %
Clostridia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	4.55 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.52 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1.52 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.52 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	6.82 %
Clostridia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	4.55 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	2.27 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.52 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.52 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1.52 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.52 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	6.82 %
Clostridia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	4.55 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.27 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.52 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.52 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1.52 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.52 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000443\|F12B_11227412	Not Available	732	Open in IMG/M
3300003203\|JGI25406J46586_10114331	All Organisms → cellular organisms → Bacteria	797	Open in IMG/M
3300003373\|JGI25407J50210_10024800	All Organisms → cellular organisms → Bacteria	1555	Open in IMG/M
3300003373\|JGI25407J50210_10098571	All Organisms → cellular organisms → Bacteria	723	Open in IMG/M
3300003373\|JGI25407J50210_10109310	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	682	Open in IMG/M
3300003373\|JGI25407J50210_10129573	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	621	Open in IMG/M
3300003373\|JGI25407J50210_10134351	All Organisms → cellular organisms → Bacteria	609	Open in IMG/M
3300003373\|JGI25407J50210_10153332	Not Available	567	Open in IMG/M
3300005562\|Ga0058697_10048190	All Organisms → cellular organisms → Bacteria	1624	Open in IMG/M
3300005562\|Ga0058697_10488349	All Organisms → cellular organisms → Bacteria	626	Open in IMG/M
3300005562\|Ga0058697_10545155	All Organisms → cellular organisms → Bacteria	598	Open in IMG/M
3300005843\|Ga0068860_100516448	All Organisms → cellular organisms → Bacteria	1194	Open in IMG/M
3300005937\|Ga0081455_10378422	All Organisms → cellular organisms → Bacteria	990	Open in IMG/M
3300005981\|Ga0081538_10013059	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	6607	Open in IMG/M
3300005981\|Ga0081538_10035304	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3286	Open in IMG/M
3300005981\|Ga0081538_10040030	All Organisms → cellular organisms → Bacteria	2995	Open in IMG/M
3300005981\|Ga0081538_10339233	All Organisms → cellular organisms → Bacteria	545	Open in IMG/M
3300005981\|Ga0081538_10340891	All Organisms → cellular organisms → Bacteria	544	Open in IMG/M
3300005985\|Ga0081539_10024818	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3877	Open in IMG/M
3300005985\|Ga0081539_10165127	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1052	Open in IMG/M
3300006049\|Ga0075417_10376620	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	699	Open in IMG/M
3300006852\|Ga0075433_10070574	All Organisms → Viruses → Predicted Viral	3070	Open in IMG/M
3300006880\|Ga0075429_100411197	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1185	Open in IMG/M
3300006880\|Ga0075429_101016500	All Organisms → cellular organisms → Bacteria	725	Open in IMG/M
3300006904\|Ga0075424_100867322	All Organisms → cellular organisms → Bacteria → Proteobacteria	963	Open in IMG/M
3300007004\|Ga0079218_13003233	All Organisms → cellular organisms → Bacteria	568	Open in IMG/M
3300009094\|Ga0111539_10016395	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	9188	Open in IMG/M
3300009094\|Ga0111539_10112226	All Organisms → cellular organisms → Bacteria	3198	Open in IMG/M
3300009147\|Ga0114129_10166009	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3013	Open in IMG/M
3300009147\|Ga0114129_12324705	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	643	Open in IMG/M
3300009789\|Ga0126307_10130757	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2004	Open in IMG/M
3300009789\|Ga0126307_10154857	All Organisms → cellular organisms → Bacteria	1835	Open in IMG/M
3300009789\|Ga0126307_10254123	All Organisms → cellular organisms → Bacteria	1413	Open in IMG/M
3300009789\|Ga0126307_10277575	All Organisms → cellular organisms → Bacteria	1348	Open in IMG/M
3300009789\|Ga0126307_10450176	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1039	Open in IMG/M
3300009840\|Ga0126313_10026988	All Organisms → cellular organisms → Bacteria	3898	Open in IMG/M
3300009840\|Ga0126313_10100686	All Organisms → Viruses → Predicted Viral	2124	Open in IMG/M
3300009840\|Ga0126313_10138200	All Organisms → cellular organisms → Bacteria	1829	Open in IMG/M
3300009840\|Ga0126313_10167252	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1671	Open in IMG/M
3300009840\|Ga0126313_10258987	All Organisms → cellular organisms → Bacteria	1351	Open in IMG/M
3300009840\|Ga0126313_11456143	All Organisms → cellular organisms → Bacteria	568	Open in IMG/M
3300010037\|Ga0126304_10970722	Not Available	579	Open in IMG/M
3300010038\|Ga0126315_10037850	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2552	Open in IMG/M
3300010038\|Ga0126315_10283789	All Organisms → cellular organisms → Bacteria	1018	Open in IMG/M
3300010041\|Ga0126312_10366588	All Organisms → cellular organisms → Bacteria	1022	Open in IMG/M
3300010042\|Ga0126314_10290397	Not Available	1166	Open in IMG/M
3300010042\|Ga0126314_10392726	All Organisms → cellular organisms → Bacteria	999	Open in IMG/M
3300010042\|Ga0126314_10723816	All Organisms → cellular organisms → Bacteria	730	Open in IMG/M
3300010042\|Ga0126314_10845942	All Organisms → cellular organisms → Bacteria	675	Open in IMG/M
3300012204\|Ga0137374_10000374	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	44041	Open in IMG/M
3300012387\|Ga0134030_1012700	Not Available	514	Open in IMG/M
3300012395\|Ga0134044_1170432	Not Available	651	Open in IMG/M
3300012937\|Ga0162653_100076522	All Organisms → cellular organisms → Bacteria	545	Open in IMG/M
3300012941\|Ga0162652_100010085	All Organisms → cellular organisms → Bacteria	1155	Open in IMG/M
3300014487\|Ga0182000_10006038	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2753	Open in IMG/M
3300014487\|Ga0182000_10019960	All Organisms → cellular organisms → Bacteria	1759	Open in IMG/M
3300014487\|Ga0182000_10142393	All Organisms → cellular organisms → Bacteria	858	Open in IMG/M
3300014487\|Ga0182000_10304729	All Organisms → cellular organisms → Bacteria	666	Open in IMG/M
3300014487\|Ga0182000_10547755	All Organisms → cellular organisms → Bacteria	548	Open in IMG/M
3300014488\|Ga0182001_10113094	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	865	Open in IMG/M
3300014488\|Ga0182001_10583319	All Organisms → cellular organisms → Bacteria	533	Open in IMG/M
3300014497\|Ga0182008_10045008	All Organisms → cellular organisms → Bacteria	2194	Open in IMG/M
3300018000\|Ga0184604_10135520	All Organisms → cellular organisms → Bacteria	799	Open in IMG/M
3300018052\|Ga0184638_1335907	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	507	Open in IMG/M
3300018056\|Ga0184623_10097816	Not Available	1355	Open in IMG/M
3300018077\|Ga0184633_10369812	All Organisms → cellular organisms → Bacteria	721	Open in IMG/M
3300018081\|Ga0184625_10034695	All Organisms → cellular organisms → Bacteria	2484	Open in IMG/M
3300018422\|Ga0190265_10296585	All Organisms → cellular organisms → Bacteria	1685	Open in IMG/M
3300018465\|Ga0190269_10171561	All Organisms → cellular organisms → Bacteria	1145	Open in IMG/M
3300018465\|Ga0190269_10515819	All Organisms → cellular organisms → Bacteria	781	Open in IMG/M
3300018466\|Ga0190268_10165043	All Organisms → cellular organisms → Bacteria	1155	Open in IMG/M
3300018466\|Ga0190268_10529262	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	811	Open in IMG/M
3300018476\|Ga0190274_10981561	All Organisms → cellular organisms → Bacteria	918	Open in IMG/M
3300018476\|Ga0190274_11917527	All Organisms → cellular organisms → Bacteria	688	Open in IMG/M
3300019377\|Ga0190264_10077474	All Organisms → cellular organisms → Bacteria	1466	Open in IMG/M
3300019377\|Ga0190264_10804104	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	716	Open in IMG/M
3300019767\|Ga0190267_10998661	All Organisms → cellular organisms → Bacteria	587	Open in IMG/M
3300019767\|Ga0190267_11077457	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	574	Open in IMG/M
3300019867\|Ga0193704_1045547	All Organisms → cellular organisms → Bacteria	866	Open in IMG/M
3300020005\|Ga0193697_1070148	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	860	Open in IMG/M
3300021078\|Ga0210381_10201350	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	694	Open in IMG/M
3300021510\|Ga0222621_1076890	All Organisms → cellular organisms → Bacteria	705	Open in IMG/M
3300022756\|Ga0222622_10006353	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	5372	Open in IMG/M
3300022756\|Ga0222622_11177086	All Organisms → cellular organisms → Bacteria	564	Open in IMG/M
3300025972\|Ga0207668_10254924	All Organisms → cellular organisms → Bacteria	1427	Open in IMG/M
3300026691\|Ga0208348_100932	All Organisms → cellular organisms → Bacteria	630	Open in IMG/M
3300027750\|Ga0209461_10030368	Not Available	1026	Open in IMG/M
3300027750\|Ga0209461_10191427	All Organisms → cellular organisms → Bacteria	517	Open in IMG/M
3300027809\|Ga0209574_10086388	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	868	Open in IMG/M
3300027809\|Ga0209574_10097856	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	830	Open in IMG/M
3300027880\|Ga0209481_10006166	All Organisms → cellular organisms → Bacteria	5097	Open in IMG/M
3300027907\|Ga0207428_10286165	All Organisms → cellular organisms → Bacteria	1222	Open in IMG/M
3300027907\|Ga0207428_10317779	All Organisms → cellular organisms → Bacteria	1150	Open in IMG/M
3300028381\|Ga0268264_10457238	All Organisms → cellular organisms → Bacteria	1238	Open in IMG/M
3300028704\|Ga0307321_1003677	All Organisms → cellular organisms → Bacteria	2565	Open in IMG/M
3300028704\|Ga0307321_1128432	All Organisms → cellular organisms → Bacteria	529	Open in IMG/M
3300028711\|Ga0307293_10001840	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5273	Open in IMG/M
3300028713\|Ga0307303_10007521	All Organisms → cellular organisms → Bacteria	1863	Open in IMG/M
3300028719\|Ga0307301_10009846	All Organisms → cellular organisms → Bacteria	2696	Open in IMG/M
3300028722\|Ga0307319_10031849	All Organisms → cellular organisms → Bacteria	1635	Open in IMG/M
3300028744\|Ga0307318_10002111	All Organisms → cellular organisms → Bacteria	6539	Open in IMG/M
3300028796\|Ga0307287_10310339	All Organisms → cellular organisms → Bacteria	596	Open in IMG/M
3300028812\|Ga0247825_11187553	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	557	Open in IMG/M
3300028872\|Ga0307314_10097450	All Organisms → cellular organisms → Bacteria	799	Open in IMG/M
3300028878\|Ga0307278_10000962	All Organisms → cellular organisms → Bacteria	14215	Open in IMG/M
3300028881\|Ga0307277_10165081	All Organisms → cellular organisms → Bacteria	963	Open in IMG/M
3300030496\|Ga0268240_10023911	All Organisms → cellular organisms → Bacteria	1179	Open in IMG/M
3300030499\|Ga0268259_10040170	All Organisms → cellular organisms → Bacteria	928	Open in IMG/M
3300030499\|Ga0268259_10062203	All Organisms → cellular organisms → Bacteria	781	Open in IMG/M
3300030510\|Ga0268243_1003032	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2818	Open in IMG/M
3300030510\|Ga0268243_1133176	All Organisms → cellular organisms → Bacteria	594	Open in IMG/M
3300030903\|Ga0308206_1015835	All Organisms → cellular organisms → Bacteria	1207	Open in IMG/M
3300031548\|Ga0307408_100038954	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3356	Open in IMG/M
3300031548\|Ga0307408_100121773	All Organisms → cellular organisms → Bacteria	2022	Open in IMG/M
3300031731\|Ga0307405_10202376	All Organisms → cellular organisms → Bacteria	1443	Open in IMG/M
3300031731\|Ga0307405_10266168	All Organisms → cellular organisms → Bacteria	1283	Open in IMG/M
3300031731\|Ga0307405_10272734	All Organisms → cellular organisms → Bacteria	1269	Open in IMG/M
3300031852\|Ga0307410_11704247	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	558	Open in IMG/M
3300031903\|Ga0307407_10059699	All Organisms → cellular organisms → Bacteria	2222	Open in IMG/M
3300032002\|Ga0307416_103650936	Not Available	515	Open in IMG/M
3300032004\|Ga0307414_11087930	All Organisms → cellular organisms → Bacteria	738	Open in IMG/M
3300032004\|Ga0307414_11934705	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	550	Open in IMG/M
3300032126\|Ga0307415_100430926	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1134	Open in IMG/M
3300032126\|Ga0307415_101265830	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	697	Open in IMG/M
3300032159\|Ga0268251_10234401	All Organisms → cellular organisms → Bacteria	735	Open in IMG/M
3300034131\|Ga0334911_009179	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1324	Open in IMG/M
3300034151\|Ga0364935_0184242	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	669	Open in IMG/M
3300034172\|Ga0334913_048086	All Organisms → cellular organisms → Bacteria	907	Open in IMG/M
3300034172\|Ga0334913_132715	All Organisms → cellular organisms → Bacteria	530	Open in IMG/M
3300034174\|Ga0334932_033689	All Organisms → cellular organisms → Bacteria	868	Open in IMG/M
3300034176\|Ga0364931_0214798	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	629	Open in IMG/M
3300034377\|Ga0334931_135856	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	587	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	59.85%
Host-Associated	Host-Associated	40.15%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	53.03%
Plants	Host-Associated → Plants	40.15%
Aquatic	Environmental → Aquatic	6.82%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	50.00%
Rhizosphere	Host-Associated → Plants → Rhizosphere	19.70%
Roots	Host-Associated → Plants → Roots	8.33%
Sediment	Environmental → Aquatic → Sediment	6.06%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.55%
Phylloplane	Host-Associated → Plants → Phylloplane	4.55%
Phyllosphere	Host-Associated → Plants → Phyllosphere	3.03%
Floodplain	Environmental → Terrestrial → Floodplain	1.52%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	1.52%
Freshwater	Environmental → Aquatic → Freshwater	0.76%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	48.48%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	18.94%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	8.33%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	6.06%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.55%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	4.55%
Phylloplane/Leaf Surface	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface	3.03%
Loam	Environmental → Terrestrial → Soil → Loam	1.52%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	1.52%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	1.52%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.76%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.76%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	43.18%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	18.94%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	8.33%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	6.06%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.55%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	4.55%
Desert	Environmental → Terrestrial → Soil → Unclassified → Desert	3.79%
Unclassified	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified	3.03%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.52%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	1.52%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	1.52%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.76%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.76%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.76%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.76%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	18.94%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	14.39%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	9.09%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	9.09%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere	8.33%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.58%
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	4.55%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.79%
Sub-Biocrust Soil	Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil	3.79%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	3.03%
Agave	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified → Agave	3.03%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.27%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.52%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.52%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	1.52%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	1.52%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.52%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.76%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.76%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.76%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.76%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.76%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000443	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.2B clc assemly	Environmental	Open in IMG/M
3300003203	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2	Host-Associated	Open in IMG/M
3300003373	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300005562	Agave microbial communities from Guanajuato, Mexico - As.Ma.e	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300005981	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300005985	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012387	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_2_16_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012395	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_8_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012937	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t5i015	Environmental	Open in IMG/M
3300012941	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t4i015	Environmental	Open in IMG/M
3300014487	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG	Environmental	Open in IMG/M
3300014488	Bulk soil microbial communities from Mexico - San Felipe (SF) metaG	Environmental	Open in IMG/M
3300014497	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG	Host-Associated	Open in IMG/M
3300018000	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_coex	Environmental	Open in IMG/M
3300018052	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2	Environmental	Open in IMG/M
3300018056	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1	Environmental	Open in IMG/M
3300018077	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b1	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300019867	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3m1	Environmental	Open in IMG/M
3300020005	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3m2	Environmental	Open in IMG/M
3300021078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo	Environmental	Open in IMG/M
3300021510	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_coex	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026691	Grasslands soil microbial communities from Gorham, Kansas, USA that are Nitrogen fertilized -NN621 (SPAdes)	Environmental	Open in IMG/M
3300027750	Agave microbial communities from Guanajuato, Mexico - As.Ma.rz (SPAdes)	Host-Associated	Open in IMG/M
3300027809	Agave microbial communities from Guanajuato, Mexico - Mg.Ma.rz (SPAdes)	Host-Associated	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028704	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_379	Environmental	Open in IMG/M
3300028711	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150	Environmental	Open in IMG/M
3300028713	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_184	Environmental	Open in IMG/M
3300028719	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_182	Environmental	Open in IMG/M
3300028722	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_368	Environmental	Open in IMG/M
3300028744	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_367	Environmental	Open in IMG/M
3300028796	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141	Environmental	Open in IMG/M
3300028812	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48	Environmental	Open in IMG/M
3300028872	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_204	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300030496	Bulk soil microbial communities from Mexico - Penjamo (Pe) metaG (v2)	Environmental	Open in IMG/M
3300030499	Agave microbial communities from Guanajuato, Mexico - As.Ma.rz (v2)	Host-Associated	Open in IMG/M
3300030510	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG (v2)	Environmental	Open in IMG/M
3300030903	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_369 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated	Open in IMG/M
3300031903	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1	Host-Associated	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032004	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3	Host-Associated	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300032159	Agave microbial communities from Guanajuato, Mexico - As.Ma.e (v2)	Host-Associated	Open in IMG/M
3300034131	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 7HMS	Environmental	Open in IMG/M
3300034151	Sediment microbial communities from East River floodplain, Colorado, United States - 2_s17	Environmental	Open in IMG/M
3300034172	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 9HMS	Environmental	Open in IMG/M
3300034174	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 28HNS	Environmental	Open in IMG/M
3300034176	Sediment microbial communities from East River floodplain, Colorado, United States - 21_j17	Environmental	Open in IMG/M
3300034377	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 27HNS	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F12B_112274121	3300000443	Soil	MSLLMLAVVALFPIVLLALLLITSGLEGRVVRQPTPKVGAGERPGTRDQG*
JGI25406J46586_101143312	3300003203	Tabebuia Heterophylla Rhizosphere	VSLLMLAVVALFPVILLALLLITSGLEGRVVGEPASRVGVGERPRARE*
JGI25407J50210_100248002	3300003373	Tabebuia Heterophylla Rhizosphere	VSLLMLAVVALFPVVLLALLLITSGLEGRVMGKPTSTVAAGKRPGPRE*
JGI25407J50210_100985711	3300003373	Tabebuia Heterophylla Rhizosphere	VSLLMLAVVALFPVVLLALLLITSGLEGRVVRSGEQPGTRE*
JGI25407J50210_101093101	3300003373	Tabebuia Heterophylla Rhizosphere	VSLLMLAVVALFPVVLLALLLITSGLEGRVVGEPTSTVAAGERPAPRE
JGI25407J50210_101295731	3300003373	Tabebuia Heterophylla Rhizosphere	MSLLMLAVVALFPVVLLALLLITSGLEGRVVGDSASRVGAGDRPGTRD*
JGI25407J50210_101343511	3300003373	Tabebuia Heterophylla Rhizosphere	VSLLMLGVVALFPILLLGLLLLTSGLEGRVVGQPTKGNGAGERSGPGPGARDQG*
JGI25407J50210_101533321	3300003373	Tabebuia Heterophylla Rhizosphere	VSLLMLAVVALFPVVLLALLLITSGLEGRVVAEPTSTAPAGERPGPRE*
Ga0058697_100481902	3300005562	Agave	VSLLMLAVVALFPVVLLALLLITSGLEGRVVGQPTPRVGATERPGTPEQR*
Ga0058697_104883491	3300005562	Agave	VSLLMLAVVALFPVVLLALLLITSGLEGRVVGSGERPGARD*
Ga0058697_105451552	3300005562	Agave	FPVVLLALLLITSGLEGRVVGQPTPRVGAGERPGTHDQG*
Ga0068860_1005164481	3300005843	Switchgrass Rhizosphere	VLLLALLLITSGLEGRVVGDSTPGVGAGDGPGTRD*
Ga0081455_103784221	3300005937	Tabebuia Heterophylla Rhizosphere	VSLLMLAVVALFPVVLLVMLLITSGLEGRVVDSGERSGGRD*
Ga0081538_100130599	3300005981	Tabebuia Heterophylla Rhizosphere	MSLLMLAVVALFPVVLLALLLITSGLEGRVVGDSTPRVGAGDRPGTRD*
Ga0081538_100353045	3300005981	Tabebuia Heterophylla Rhizosphere	VSLLMLAVVALFPIVLLALLLITSGLEGRVVGRPTSEVGTGDRSGPPE*
Ga0081538_100400304	3300005981	Tabebuia Heterophylla Rhizosphere	MSLLMLAVVALFPVVLLGLLLITSGLEGRVVGDSASRAGAGDRPGTRD*
Ga0081538_103392332	3300005981	Tabebuia Heterophylla Rhizosphere	VSLLMLAVVALFPVVLLALLLITSGREGRVVGSGEPPGAQD*
Ga0081538_103408912	3300005981	Tabebuia Heterophylla Rhizosphere	VSLLMLAVVALFPVVLLALLLITSGLEGRVVGQPTPRVGAGERPGTRDQG*
Ga0081539_100248184	3300005985	Tabebuia Heterophylla Rhizosphere	VSLLMLAVVALFPVLLLGLLLITSGLEGRVVGEPASRVGVGERPGTRE*
Ga0081539_101651272	3300005985	Tabebuia Heterophylla Rhizosphere	VSLLMLAVVALFPIALLALLLITSGMERRVVGDATSGVDAGEPPAPRDRR*
Ga0075417_103766201	3300006049	Populus Rhizosphere	VSLLMLAVVALFPVVLLALLLVTSGLEGRVVGSGEQPGSQD*
Ga0075433_100705743	3300006852	Populus Rhizosphere	MLAVVALFPLVLLALLLLTSGLEGRVGDRVPRAGTAERPDPRDRR*
Ga0075429_1004111972	3300006880	Populus Rhizosphere	MLAVVALFPLVLLALLLLTSDLEGRVGDRVPRAGTAERPDPRDRR*
Ga0075429_1010165001	3300006880	Populus Rhizosphere	MLAVVALFPVVLLALLLVTSGLEGRVVGSGEQPGSQD*
Ga0075424_1008673222	3300006904	Populus Rhizosphere	VSLLMFAVVALFPVVLLALLLITAGLEGRVGDSGERSGGRD*
Ga0079218_130032331	3300007004	Agricultural Soil	VSLLMLAVVALFPIVLLALLLITSGLEGRVVGRPTSEVGTGDRSGTPG*
Ga0111539_100163955	3300009094	Populus Rhizosphere	MLAVVVLFPIVLLALLLITSGMERRVVGGSSSGAGAGERPAPTDRR*
Ga0111539_101122262	3300009094	Populus Rhizosphere	MLAVVALFPVVLLALLLITAGLEGRVGDSGERSGGRD*
Ga0114129_101660094	3300009147	Populus Rhizosphere	VSLLMLAVVALFPVVLLALLLITAGLEGRVGDSGERSGGRD*
Ga0114129_123247052	3300009147	Populus Rhizosphere	MLAVVALFPVVLLALLLVTSGLEGRVVGSGEQPGSRD*
Ga0126307_101307573	3300009789	Serpentine Soil	MSLLMLAVVALFPVVLLALLLITSGLEGRVVGDSTPSAGPGERSGTRD*
Ga0126307_101548573	3300009789	Serpentine Soil	MLAVVALFPVILLALLLITSGLEGRVVGEPTSQVGVGERPGAPE*
Ga0126307_102541232	3300009789	Serpentine Soil	MLAVVALFPLILLALLLITSGLEGRVVGEPPTSRVGVGERPGTRE*
Ga0126307_102775752	3300009789	Serpentine Soil	MLAVVALFPVLLLALLLITSGLEGRVVGEPTSQVGVGERPGGHE*
Ga0126307_104501762	3300009789	Serpentine Soil	MSLLMLAVVALFPVVLLALLLITSGLEGRVVGDSTPGAGAGERPGTRD*
Ga0126313_100269883	3300009840	Serpentine Soil	MLAVVVLFPVVLLALLLITSGLEGRVVRQPTPKVGAGERPGTRDQG*
Ga0126313_101006862	3300009840	Serpentine Soil	MFLASLSRDSFLLMLAVVALFPVVLLALLLITSGLEGRVVGAGERPGPRE*
Ga0126313_101382002	3300009840	Serpentine Soil	MLAVVALFPVILLALLLITSGLEGRVVGEPTSRVGAGERPGARE*
Ga0126313_101672523	3300009840	Serpentine Soil	MLAVVALFPVVLLALLLITSGLEGRVVGDPTPRVGAGERPGPRDQR*
Ga0126313_102589872	3300009840	Serpentine Soil	MLAVVALFPVILLALLLITSGLEGRVVGEPPTSRVGVGERPGTRE*
Ga0126313_114561432	3300009840	Serpentine Soil	VLLALLLITSGLEGRVVGDSTPGAGAGERPGTRD*
Ga0126304_109707222	3300010037	Serpentine Soil	MLAVVALFPVVLLALLLITSGLEGRVVGEPTSTVAAGERPGPRE*
Ga0126315_100378502	3300010038	Serpentine Soil	MLAVVALFPVVLLALLLITSGLEGRVVGDPTPEVGASERPGPRDRR*
Ga0126315_102837893	3300010038	Serpentine Soil	LFPVVLLALLLITSGLEGRVVGDPTPRVGAGERPGPRDQR*
Ga0126312_103665881	3300010041	Serpentine Soil	PVILLALLLITSGLEGRVVGEPPTSRVGVGERPGTRE*
Ga0126314_102903971	3300010042	Serpentine Soil	MLAVVALFPVVLLALLLITSGLEGRVVGDPTPEVGAGERPGPRDRR*
Ga0126314_103927262	3300010042	Serpentine Soil	MLAVVALFPVILLALLLITSGLEGRVVGEPTSRVGVGERPGARE*
Ga0126314_107238162	3300010042	Serpentine Soil	ALFPVVLLALLLITSGLEGRVVGDPTPEVGASERPGPRDRR*
Ga0126314_108459422	3300010042	Serpentine Soil	MLAVVALFPAVLLALLLITSGLEGRVVGDPTPRVGAGERPGPRDQR*
Ga0137374_100003749	3300012204	Vadose Zone Soil	MLAVVALFPVTLLAILLLTSGLEGKFVRSNPSPPRQARNRPGTRHD*
Ga0134030_10127001	3300012387	Grasslands Soil	GGCPGVSLLMLAVVALFPVVLLALLLITSGMERRVVGDSTSGAGAGERPAPPDRR*
Ga0134044_11704322	3300012395	Grasslands Soil	GCPVVSLLMLAVVALFPIVLLALLLITSGMERRVVGDSTSGAGAGERPAPPDRC*
Ga0162653_1000765221	3300012937	Soil	AVVALFPVLLLALLLITSGLEGRVVGDSTPGVGSGDGPGTRD*
Ga0162652_1000100852	3300012941	Soil	MSLLMLAVVALFPIVLLALLLITSGLEGRVVGDSTPGVGAGDRPGTRD*
Ga0182000_100060384	3300014487	Soil	MLAVVALFPVILLALLLITSGLEGRVVGEPTSRVGVGERPGTRE*
Ga0182000_100199602	3300014487	Soil	MLAVVVLFPVVLLALLLITSGLEGRVVRQPTPKVGAGERPGTRGQG*
Ga0182000_101423932	3300014487	Soil	MLAVVALFPVVLLALLLITSGLEGRVVGQPTPRVGAGERPGTHDQG*
Ga0182000_103047292	3300014487	Soil	MLAVVALFPVILLALLLITSGLEGRVVGEPASRVGVGERPGTRE*
Ga0182000_105477551	3300014487	Soil	MLAVVALFPVILLGLLLITSGLEGRVVGEPASRVGVGEGPGARE*
Ga0182001_101130942	3300014488	Soil	MSLLMLAVVALFPVVLLALLLITSGLEGRVVGDSTPRARAGDRPGTRD*
Ga0182001_105833192	3300014488	Soil	MLAVVALFPVILLALLLITSGLEGRVVGEPTPEVGVGERPGARE*
Ga0182008_100450082	3300014497	Rhizosphere	MLAVVALFPVVLLALLLITSGLEGRVVRQPTPKVGAGERPGTRGQG*
Ga0184604_101355201	3300018000	Groundwater Sediment	ILLLGLLLLTSGLEGRVVGEPTPRVGAADRRGPRE
Ga0184638_13359071	3300018052	Groundwater Sediment	VSLLMLAVVALFPVVLLALLLITSGLEGRVVGDPTPKVGAGERPGTPPE
Ga0184623_100978162	3300018056	Groundwater Sediment	VSLLMLAVVALFPVVLLALLLITSGLEGRVKGDPTPKVGAGERPGTPPE
Ga0184633_103698121	3300018077	Groundwater Sediment	LFPVLLLALLLITSGLEGRVVGDSTPGVGSGDGPGTRD
Ga0184625_100346953	3300018081	Groundwater Sediment	VSLLMLAVVALFPVVLLALLLVTSGLEGRVVGSREQPGSRD
Ga0190265_102965852	3300018422	Soil	MSLLMLAVVALFPVVLLALLLITSGLEGRVVGDSTPSAGPGERSGTRD
Ga0190269_101715612	3300018465	Soil	VSLLMLAVVALFPVILLALLLITSGLEGRVVGEPTSRVGAGERPGTRE
Ga0190269_105158192	3300018465	Soil	MSLLMLAVVALFPVVLLALLLITSGLEGRVVGDSTPSAGTGERSGTRD
Ga0190268_101650432	3300018466	Soil	VSLLMLAVVALFPVVLLALLLITSGLEGRVVRQPTPRVDAGERPGTRDQG
Ga0190268_105292622	3300018466	Soil	VSLLMLAVVALFPVVLLALLLVTSGLEGRVVGSGEQPGSRD
Ga0190274_109815612	3300018476	Soil	VSLLMLAVVALFPVVLLALLLVTSGLEGRVVGPGEQPPTGD
Ga0190274_119175272	3300018476	Soil	ALFPVVLLALLLITSGLEGRVVGDSTPSAGPGERSGTRD
Ga0190264_100774742	3300019377	Soil	VSLLMLAVVALFPVVLLALLLITSGLEGRVVGDPTPRAGAAERSGRREQG
Ga0190264_108041041	3300019377	Soil	VSLLMLAVVALFPVVLLALLLITSGLEGRVVGEPTGEVAVRDRSGAGEQR
Ga0190267_109986612	3300019767	Soil	VSLLMLAVVALFPVVLLALLLITSGLEGRVVGDSTPRVRAGERPETRE
Ga0190267_110774572	3300019767	Soil	VSLLMLAVVALFPVILLALLLITSGLEGRVVGEPTSRVGVGERPGARE
Ga0193704_10455473	3300019867	Soil	LFPVLLLALLLITSGLEGRVVGDSPPGVGAGDGPGTRD
Ga0193697_10701482	3300020005	Soil	VSLLMLAVVALFPVVLLALLLVTSGLEGRVVGSGEQPGSQD
Ga0210381_102013502	3300021078	Groundwater Sediment	MLAVVALFPVVLLALLLITSGMERRVVGDSTSRAGTGERPAPRDRR
Ga0222621_10768901	3300021510	Groundwater Sediment	ALFPVLLLALLLITSGLEGRVVGDSPPGVGAGDGPGTRD
Ga0222622_100063538	3300022756	Groundwater Sediment	VSLLMLAVVALFPVVLLALLLITSGMERRMVGDSTSRAGTGERPAPRDRR
Ga0222622_111770861	3300022756	Groundwater Sediment	VALFPILLLALLLLTSGLEGRVVGEPTPRVGAADRPGPRE
Ga0207668_102549243	3300025972	Switchgrass Rhizosphere	ALFPVLLLALLLITSGLEGRVVGDSTPGVGAGDGPGTRD
Ga0208348_1009321	3300026691	Soil	SLLMLAVVALFPVVLLALLLITSGLEGRVVGDSTPSAGTGERSGTRD
Ga0209461_100303682	3300027750	Agave	VSLLMLAVVALFPVVLLALLLITSGLEGRVVGDPTPRVGAGERP
Ga0209461_101914272	3300027750	Agave	VSLLMLAVVALFPVVLLALLLITSGLEGRVVGDPTPRVGAGERPGPRDRR
Ga0209574_100863882	3300027809	Agave	VSLLMLAVVALFPVVLLALLLITSGLEGRVVGQPTPRVGAGERPGTPEQR
Ga0209574_100978562	3300027809	Agave	VSLLMLAVVALFPVVLLALLLITSGLEGRVVGSGERPGARD
Ga0209481_100061661	3300027880	Populus Rhizosphere	AVVALFPIVLLALLLITSGMERRVVGGSSSGAGAGERPAPPDRR
Ga0207428_102861652	3300027907	Populus Rhizosphere	VSLLMLAVVALFPVVLLALLLITAGLEGRVGDSGERSGGRD
Ga0207428_103177793	3300027907	Populus Rhizosphere	FPLVLLALLLLTSGLEGRVGDRVPRAGTAERPDPRDRR
Ga0268264_104572383	3300028381	Switchgrass Rhizosphere	VLLLALLLITSGLEGRVVGDSTPGVGAGDGPGTRD
Ga0307321_10036773	3300028704	Soil	VSLLMLAVVALFPIVLLALLLITSGMERRVVGDSTSRAGTGERPAPRDRR
Ga0307321_11284322	3300028704	Soil	LAVVALFPVLLLALLLITSGLEGRVVGDSTPGVGAGDGPGTRD
Ga0307293_100018404	3300028711	Soil	VSLLMLAVVALFPIVLLALLLITSGMERRMVGDSTSRAGTGERPAPRDRR
Ga0307303_100075213	3300028713	Soil	PIVLLALLLITSGMERRVVGDSTSRAGTGERPAPRDRR
Ga0307301_100098461	3300028719	Soil	DSFLLMLAVVALFPVVLLALLLVTSGLEGRVVGSGEQPGSQD
Ga0307319_100318492	3300028722	Soil	MSLLMLAVVALFPIVLLALLLITSGLEGRVVGDSTPGAGAGERPGTRD
Ga0307318_100021118	3300028744	Soil	VSLLMLAVVALFPVVLLALLLITSGMERRVVGDSTSRAGTGERPAPRDRR
Ga0307287_103103391	3300028796	Soil	LAVVALFPIVLLALLLITSGLEGRVVGDSTPGAGAGERPGTRD
Ga0247825_111875531	3300028812	Soil	VSLLMLAVVALFPVTLLAILLLTSGLEGKFVSPHPAKTP
Ga0307314_100974502	3300028872	Soil	MLAVVALFPIVLLALLLITSGMERRMVGDSTSRAGTGERPAPRDRR
Ga0307278_1000096212	3300028878	Soil	VSLLMLAVVALFPIVLLALLLITSGLEGRVVGGTTPRVGVGDRQGPRE
Ga0307277_101650811	3300028881	Soil	ALFPILLLGLLLLTSGLEGRVVGEPTPRVGAADRRGPRE
Ga0268240_100239113	3300030496	Soil	VSLLMLAVVALFPVILLALLLITSGLEGRVVGEPTSRVGVGEGPGARE
Ga0268259_100401701	3300030499	Agave	VSLLMLAVVALFPVVLALLLITSGLEGRVVGQPTPRVGATERPGTPEQR
Ga0268259_100622031	3300030499	Agave	VSLLMLAVVALFPVVLLALLLITSGLEGRVVRQPTPKVGAGERPGTRDQG
Ga0268243_10030324	3300030510	Soil	VSLLMLAVVALFPVILLALLLITSGLEGRVVGEPTSRVGVGERPGTRE
Ga0268243_11331762	3300030510	Soil	VSLLMLAVVALFPVVLLALLLITSGLEGRVVGQPTPRVGAGERPGTHDQG
Ga0308206_10158353	3300030903	Soil	ALFPVLLLALLLITSGLEGRVVGDSTPGVGAGDRPGTRD
Ga0307408_1000389543	3300031548	Rhizosphere	VSLLMLAVVALFPVILLALLLITSGLEGRVVGEPTSRVGAGERPGARE
Ga0307408_1001217732	3300031548	Rhizosphere	MSLLMLAVVALFPLVLLGLLLITSGLEGRVVGDSAPRVGAGDRPGTRD
Ga0307405_102023762	3300031731	Rhizosphere	VSLLMLAVVALFPVVLLALLLITSGLEGRVVGDPTPRVGAGERPGPRDQR
Ga0307405_102661683	3300031731	Rhizosphere	VSLLMLAVVALFPVILLGLLLITSGLEGRVVGEPTPRVGVGERPGARE
Ga0307405_102727342	3300031731	Rhizosphere	MFLASLSRDSFLLMLAVVALFPVVLLALLLITSGLEGRVVGAGERPGPRE
Ga0307410_117042472	3300031852	Rhizosphere	VSLLMLAVVALFPVILLALLLITSGLEGRVVGEPTSQVGVGERPGARE
Ga0307407_100596991	3300031903	Rhizosphere	VSLLMLAVVALFPVILLALLLITSGLEGRVVGEPTSRLGAGERPGARE
Ga0307416_1036509362	3300032002	Rhizosphere	VSLLMLGVVALFPVLLLALLLITSGLEGRVVGQPTPRVDAGERPGPHDQQ
Ga0307414_110879302	3300032004	Rhizosphere	VSLLMLAVVALFPVILLALLLITSGLEGRVVGEPTSQVGVGERPGAPE
Ga0307414_119347051	3300032004	Rhizosphere	MFLASLSRDSFLLMLAVVALFPVVLLALLLITSGLEGRVVGAGERPGPR
Ga0307415_1004309262	3300032126	Rhizosphere	VSLLMLAVVALFPVVLLALLLITSGLEGRVVGDPSPRVGAGERPGPRDQR
Ga0307415_1012658302	3300032126	Rhizosphere	VSLLMLAVVALFPVVLLALLLITSGLEGRVVGDPTPEVGAGERPGPRDRR
Ga0268251_102344012	3300032159	Agave	FPVILLALLLITSGLEGRVVGEPTSQVGVGDRPGARE
Ga0334911_009179_726_866	3300034131	Sub-Biocrust Soil	MLAVVALFPVVLLALLLITSGLEGRVVGQPTPRVGAGERPGTPEQR
Ga0364935_0184242_263_409	3300034151	Sediment	MSLLMLAVVALFPVVLLALLLITSGLEGRVVGDSTPRVRAGERPETRE
Ga0334913_048086_574_708	3300034172	Sub-Biocrust Soil	MLAVVALFPVVLLALLLITSGLEGRVVAEPTPRVGVAERPGTRE
Ga0334913_132715_20_160	3300034172	Sub-Biocrust Soil	MLAVVALFPVVLLALLLITSGLEGRVVGQPTPKVGAGERPGTHDRR
Ga0334932_033689_496_636	3300034174	Sub-Biocrust Soil	MLAVVALFPVVLLALLLITSGLEGRVVGQPTPRVGAGERPGTRDQG
Ga0364931_0214798_426_539	3300034176	Sediment	MLAVVALFPVVLLALLLVTSGLEGRVVGSGEQPGSQD
Ga0334931_135856_414_557	3300034377	Sub-Biocrust Soil	MMLAVVALFPVVLLALLLITSGLEGRVVGQPTPRVGAGERPGTRDQG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F060671

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences