Sample 3300026677

Overview

Basic Information
IMG/M Taxon OID	3300026677 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0095510 \| Gp0072131 \| Ga0207600
Sample Name	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-HINK08-A (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	8698947
Sequencing Scaffolds	19
Novel Protein Genes	19
Associated Families	19

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	3
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	7
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Aeromonadales → Aeromonadaceae → Aeromonas → Aeromonas jandaei	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	1
All Organisms → cellular organisms → Bacteria	3
Not Available	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	terrestrial biome → agricultural field → agricultural soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Wisconsin, United States
Coordinates	Lat. (^o)	43.42	Long. (^o)	-89.4	Alt. (m)	N/A	Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Family	Category	Number of Sequences	3D Structure?
F001033	Metagenome / Metatranscriptome	799	Y
F001757	Metagenome / Metatranscriptome	641	N
F002861	Metagenome / Metatranscriptome	525	Y
F003779	Metagenome / Metatranscriptome	469	Y
F005688	Metagenome / Metatranscriptome	393	Y
F005962	Metagenome / Metatranscriptome	385	Y
F010193	Metagenome	307	Y
F012304	Metagenome	282	N
F012903	Metagenome / Metatranscriptome	276	N
F015019	Metagenome	258	Y
F016176	Metagenome / Metatranscriptome	249	Y
F019922	Metagenome / Metatranscriptome	227	N
F023659	Metagenome	209	Y
F043799	Metagenome	155	Y
F053939	Metagenome	140	N
F054479	Metagenome / Metatranscriptome	139	Y
F059436	Metagenome / Metatranscriptome	134	N
F087555	Metagenome	110	N
F102151	Metagenome / Metatranscriptome	102	Y

Family

Category

Number of Sequences

3D Structure?

F001033

Metagenome / Metatranscriptome

799

F001757

Metagenome / Metatranscriptome

641

F002861

Metagenome / Metatranscriptome

525

F003779

Metagenome / Metatranscriptome

469

F005688

Metagenome / Metatranscriptome

393

F005962

Metagenome / Metatranscriptome

385

F010193

Metagenome

307

F012304

Metagenome

282

F012903

Metagenome / Metatranscriptome

276

F015019

Metagenome

258

F016176

Metagenome / Metatranscriptome

249

F019922

Metagenome / Metatranscriptome

227

F023659

Metagenome

209

F043799

Metagenome

155

F053939

Metagenome

140

F054479

Metagenome / Metatranscriptome

139

F059436

Metagenome / Metatranscriptome

134

F087555

Metagenome

110

F102151

Metagenome / Metatranscriptome

102

Scaffold	Taxonomy	Length	IMG/M Link
Ga0207600_100028	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1520	Open in IMG/M
Ga0207600_100075	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1217	Open in IMG/M
Ga0207600_100211	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	948	Open in IMG/M
Ga0207600_100236	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Aeromonadales → Aeromonadaceae → Aeromonas → Aeromonas jandaei	923	Open in IMG/M
Ga0207600_100417	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	804	Open in IMG/M
Ga0207600_100426	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	798	Open in IMG/M
Ga0207600_100462	All Organisms → cellular organisms → Bacteria	777	Open in IMG/M
Ga0207600_100465	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	773	Open in IMG/M
Ga0207600_100475	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	768	Open in IMG/M
Ga0207600_100514	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	747	Open in IMG/M
Ga0207600_100542	Not Available	732	Open in IMG/M
Ga0207600_100730	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	679	Open in IMG/M
Ga0207600_100844	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	654	Open in IMG/M
Ga0207600_100971	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	629	Open in IMG/M
Ga0207600_101106	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	611	Open in IMG/M
Ga0207600_101422	All Organisms → cellular organisms → Bacteria	570	Open in IMG/M
Ga0207600_101481	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	564	Open in IMG/M
Ga0207600_101516	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	561	Open in IMG/M
Ga0207600_101950	All Organisms → cellular organisms → Bacteria	522	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0207600_100028

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia

1520

Open in IMG/M

Ga0207600_100075

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia

1217

Open in IMG/M

Ga0207600_100211

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium

948

Open in IMG/M

Ga0207600_100236

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Aeromonadales → Aeromonadaceae → Aeromonas → Aeromonas jandaei

923

Open in IMG/M

Ga0207600_100417

All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium

804

Open in IMG/M

Ga0207600_100426

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium

798

Open in IMG/M

Ga0207600_100462

All Organisms → cellular organisms → Bacteria

777

Open in IMG/M

Ga0207600_100465

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium

773

Open in IMG/M

Ga0207600_100475

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia

768

Open in IMG/M

Ga0207600_100514

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium

747

Open in IMG/M

Ga0207600_100542

Not Available

732

Open in IMG/M

Ga0207600_100730

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium

679

Open in IMG/M

Ga0207600_100844

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium

654

Open in IMG/M

Ga0207600_100971

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia

629

Open in IMG/M

Ga0207600_101106

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium

611

Open in IMG/M

Ga0207600_101422

All Organisms → cellular organisms → Bacteria

570

Open in IMG/M

Ga0207600_101481

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

564

Open in IMG/M

Ga0207600_101516

All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes

561

Open in IMG/M

Ga0207600_101950

All Organisms → cellular organisms → Bacteria

522

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0207600_100028	Ga0207600_1000281	F023659	LAPSTVALILALAFVARLAEIALDIGAALRALANTKIHSNAAHPNISTGS
Ga0207600_100075	Ga0207600_1000751	F012304	MRSGSATELSAYTYQRAIKLTPVGGIAMPYLREQESVANVNEAQINGDEKLVLAQLIVSAAPLFYALLPCSEQKMLTLVAEQIGEPGTELQNTYVLRHGGRVSSILSAVGDNQITTARLGSSMNFIRKLGRSERACYMSNLKRYAKELEPIDKPGTYIARLATTPASNTAGAGARLLKWFLLSSGPGLYTCHVHKDNSIAMWLNQKVGFRLISELNEGAFDYRALVLQL
Ga0207600_100211	Ga0207600_1002112	F016176	MINRNIKAIAFASLTAAILLTAFSASLAQSGGASLHGWVAFEDIAYVDKQPRANVVLQHDPPGSGPAYSTETDEHGFFEFPHTSLGRFKLEITAKGFQPYSADVYMPSD
Ga0207600_100236	Ga0207600_1002361	F054479	MRHDMESCGQGGEDRDKTWLDGPVASVKGKLSDDLAPMDRGNGEEQVRSRSMYQ
Ga0207600_100417	Ga0207600_1004171	F015019	MSDSSVLSPDAPASESSSLRLPISSIVRAVCEAANGGPDLLYEVMIKVSLMVEATAPTYGLSIWATSDSGKPTLRWAEGLEDKEIAIGESAVAEIFASKGRPQSAKEGDHAICI
Ga0207600_100426	Ga0207600_1004261	F001757	MMRILKPLQDKATTGAGKRLVLPEPRRVRFLIRGEGSVSAGAVTIECCPESTKAGKFWMELATIPVPDNGVAQYYTEEASGLFRARISQPVSNGAVTVTPLVSRGRPDRPDRTKVV
Ga0207600_100462	Ga0207600_1004621	F102151	ERRLVAAQKSELAKKRDEYARHEDDITNALAQARKSLGIKS
Ga0207600_100465	Ga0207600_1004652	F012903	ALNHTMKATLIILTMLASALAASAQQPVIATTEDGRKVLLYPNGQWRLLRGTGPQVDHSVSQEGVQDHTYEFIQDYTIGSGEASIRFRRGERYRGRIFMNHHAEVDVNGVSYSVPRGVLSDKHLD
Ga0207600_100475	Ga0207600_1004751	F053939	RELTDATQEVQMNSVYDEKVLREAIRSFMDAGRIATSPEMRLVCHGLASLAFSINELQKRLHFVEERVGGSPMRDIQELLGAKKEESHEQIAEGHFWRTNRG
Ga0207600_100514	Ga0207600_1005142	F002861	MEKIKHNHSLGANFEARTVKDIIEPAKSISNKVSVRAALDQMQARAIDSSPVIDRRGELLGAVSQNRMNREVGGFGHDPKTEPVEAQIEK
Ga0207600_100542	Ga0207600_1005421	F059436	WRAGRPPRGGVRKACGEPPGRNQRERSRAMNRSAEDGEWSSPHYGGEGTGVPPRRTKVCAGDTVGKSVSDPGRPGIVHREGMAGIVRHSQTKGRETGNAKPGLKPPMVGADISASEIPTEAVPGVGSGRGTQERGQSKRPRIAAGRAATPVGSKRPTGGGRPRAVWQRRRATRG
Ga0207600_100730	Ga0207600_1007301	F019922	IYRIMLAYRSTIVAIFVSLALAGCDRNQSQTPQQSTINQTPSAHSQTKGLRAASAVGYDGKQLQKQVDRVLEQKQKRDGDLEKALDDTGPQ
Ga0207600_100844	Ga0207600_1008441	F003779	QNEITLMKMTLKNRTALVALLFGLALSLVPKVNASGPFATNYTNASLTGVYGYSSDGWHLGSSNPSKNTTNIPLDAAGVMWFDGLSTFKFHDTADLGGFVIQRGTADNPIVGTYTVNPDGTGTMQWFSDGSNHARAFAIVDGGRELQFGAADGLDVARGVARKQ
Ga0207600_100971	Ga0207600_1009711	F005688	MKNRNPLISHLRTSFCALVIVGALLALPRAEASGPPLPARGEFFACFKYAAPPRQVGENLIIMFNISGTLTDTFTGSFVGTELDVVHRDGSITKHGSFVFTGSVTGRSGTGTLHVTFEGIGNAVTGHEVLRVVSREGTGSLAGVYAE
Ga0207600_101106	Ga0207600_1011061	F001033	ERRFMNFVSRTKSMAVPHQILGASTNEKRELLMCGHSLIARLTIAVFVFQMLGVTSVVHAEGPDSTAGTSTAGTRKLFINPSSTSVALGKASLIVSPLTHRDGNYVGDYQLKVRPYFFKSEKGSLLLAASDDAVRKLQTGTAINFTGKAVTHKDGRTHIVLGRATPSSRDRGSVTFSIITDDARIVFNTSYHFPAPRP
Ga0207600_101422	Ga0207600_1014222	F087555	FMRPLHCLLLALAIFETGCAAQQQAENSDPMLQRIEQPKVHGEVGVVYGQSAR
Ga0207600_101481	Ga0207600_1014811	F010193	RQVKLVRNAENQQIVQMIGFNFGARIPIQTTPTLAANGAIAPAFNYEPTGLSTDISMREAEPVIVGTLNVGPSGDAIILVVSAKRTTK
Ga0207600_101516	Ga0207600_1015161	F043799	MTCCPRSRQRLCVLQHRPLLSELLYDRTGLTREERKAIESKVEITNTLNVEKDQPQLSLVELQAAEGSFRQPTPAELSILTFWKLRYARSRAQELSNEFARLLNRGSPLE
Ga0207600_101950	Ga0207600_1019502	F005962	MVMETIRDNGHSDRVVKKCHRIAGLKALLKEWELSGDLDLNYIRGLKARLLSVQNQLKNMCGHDGS

Scaffold ID

Protein ID

Family

Sequence

Ga0207600_100028

Ga0207600_1000281

F023659

LAPSTVALILALAFVARLAEIALDIGAALRALANTKIHSNAAHPNISTGS

Ga0207600_100075

Ga0207600_1000751

F012304

MRSGSATELSAYTYQRAIKLTPVGGIAMPYLREQESVANVNEAQINGDEKLVLAQLIVSAAPLFYALLPCSEQKMLTLVAEQIGEPGTELQNTYVLRHGGRVSSILSAVGDNQITTARLGSSMNFIRKLGRSERACYMSNLKRYAKELEPIDKPGTYIARLATTPASNTAGAGARLLKWFLLSSGPGLYTCHVHKDNSIAMWLNQKVGFRLISELNEGAFDYRALVLQL

Ga0207600_100211

Ga0207600_1002112

F016176

MINRNIKAIAFASLTAAILLTAFSASLAQSGGASLHGWVAFEDIAYVDKQPRANVVLQHDPPGSGPAYSTETDEHGFFEFPHTSLGRFKLEITAKGFQPYSADVYMPSD

Ga0207600_100236

Ga0207600_1002361

F054479

MRHDMESCGQGGEDRDKTWLDGPVASVKGKLSDDLAPMDRGNGEEQVRSRSMYQ

Ga0207600_100417

Ga0207600_1004171

F015019

MSDSSVLSPDAPASESSSLRLPISSIVRAVCEAANGGPDLLYEVMIKVSLMVEATAPTYGLSIWATSDSGKPTLRWAEGLEDKEIAIGESAVAEIFASKGRPQSAKEGDHAICI

Ga0207600_100426

Ga0207600_1004261

F001757

MMRILKPLQDKATTGAGKRLVLPEPRRVRFLIRGEGSVSAGAVTIECCPESTKAGKFWMELATIPVPDNGVAQYYTEEASGLFRARISQPVSNGAVTVTPLVSRGRPDRPDRTKVV

Ga0207600_100462

Ga0207600_1004621

F102151

ERRLVAAQKSELAKKRDEYARHEDDITNALAQARKSLGIKS

Ga0207600_100465

Ga0207600_1004652

F012903

ALNHTMKATLIILTMLASALAASAQQPVIATTEDGRKVLLYPNGQWRLLRGTGPQVDHSVSQEGVQDHTYEFIQDYTIGSGEASIRFRRGERYRGRIFMNHHAEVDVNGVSYSVPRGVLSDKHLD

Ga0207600_100475

Ga0207600_1004751

F053939

RELTDATQEVQMNSVYDEKVLREAIRSFMDAGRIATSPEMRLVCHGLASLAFSINELQKRLHFVEERVGGSPMRDIQELLGAKKEESHEQIAEGHFWRTNRG

Ga0207600_100514

Ga0207600_1005142

F002861

MEKIKHNHSLGANFEARTVKDIIEPAKSISNKVSVRAALDQMQARAIDSSPVIDRRGELLGAVSQNRMNREVGGFGHDPKTEPVEAQIEK

Ga0207600_100542

Ga0207600_1005421

F059436

WRAGRPPRGGVRKACGEPPGRNQRERSRAMNRSAEDGEWSSPHYGGEGTGVPPRRTKVCAGDTVGKSVSDPGRPGIVHREGMAGIVRHSQTKGRETGNAKPGLKPPMVGADISASEIPTEAVPGVGSGRGTQERGQSKRPRIAAGRAATPVGSKRPTGGGRPRAVWQRRRATRG

Ga0207600_100730

Ga0207600_1007301

F019922

IYRIMLAYRSTIVAIFVSLALAGCDRNQSQTPQQSTINQTPSAHSQTKGLRAASAVGYDGKQLQKQVDRVLEQKQKRDGDLEKALDDTGPQ

Ga0207600_100844

Ga0207600_1008441

F003779

QNEITLMKMTLKNRTALVALLFGLALSLVPKVNASGPFATNYTNASLTGVYGYSSDGWHLGSSNPSKNTTNIPLDAAGVMWFDGLSTFKFHDTADLGGFVIQRGTADNPIVGTYTVNPDGTGTMQWFSDGSNHARAFAIVDGGRELQFGAADGLDVARGVARKQ

Ga0207600_100971

Ga0207600_1009711

F005688

MKNRNPLISHLRTSFCALVIVGALLALPRAEASGPPLPARGEFFACFKYAAPPRQVGENLIIMFNISGTLTDTFTGSFVGTELDVVHRDGSITKHGSFVFTGSVTGRSGTGTLHVTFEGIGNAVTGHEVLRVVSREGTGSLAGVYAE

Ga0207600_101106

Ga0207600_1011061

F001033

ERRFMNFVSRTKSMAVPHQILGASTNEKRELLMCGHSLIARLTIAVFVFQMLGVTSVVHAEGPDSTAGTSTAGTRKLFINPSSTSVALGKASLIVSPLTHRDGNYVGDYQLKVRPYFFKSEKGSLLLAASDDAVRKLQTGTAINFTGKAVTHKDGRTHIVLGRATPSSRDRGSVTFSIITDDARIVFNTSYHFPAPRP

Ga0207600_101422

Ga0207600_1014222

F087555

FMRPLHCLLLALAIFETGCAAQQQAENSDPMLQRIEQPKVHGEVGVVYGQSAR

Ga0207600_101481

Ga0207600_1014811

F010193

RQVKLVRNAENQQIVQMIGFNFGARIPIQTTPTLAANGAIAPAFNYEPTGLSTDISMREAEPVIVGTLNVGPSGDAIILVVSAKRTTK

Ga0207600_101516

Ga0207600_1015161

F043799

MTCCPRSRQRLCVLQHRPLLSELLYDRTGLTREERKAIESKVEITNTLNVEKDQPQLSLVELQAAEGSFRQPTPAELSILTFWKLRYARSRAQELSNEFARLLNRGSPLE

Ga0207600_101950

Ga0207600_1019502

F005962

MVMETIRDNGHSDRVVKKCHRIAGLKALLKEWELSGDLDLNYIRGLKARLLSVQNQLKNMCGHDGS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300026677: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-HINK08-A (SPAdes)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences