3300026546: Deep-sea worm associated microbial mat communities from Axial Seamount, Juan de Fuca Ridge, Pacific Ocean - Axial_Mat

Overview

Basic Information

• IMG/M Taxon OID: 3300026546
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0046784 | Gp0296322 | Ga0256913
• Sample Name: Deep-sea worm associated microbial mat communities from Axial Seamount, Juan de Fuca Ridge, Pacific Ocean - Axial_Mat
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 1068690604
• Sequencing Scaffolds: 8
• Novel Protein Genes: 9
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	2
Not Available	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobulbaceae → Candidatus Electrothrix → Candidatus Electrothrix marina	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From Hydrothermal Vents In The Atlantic And Pacific Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Microbial Mats → Deep-Sea Worm Associated Microbial Mat → Marine Microbial Communities From Hydrothermal Vents In The Atlantic And Pacific Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): ocean biome → oceanic zone → microbial mat material
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: Pacific Ocean: Juan de Fuca Ridge
• Coordinates
  • Lat. (^o): 45.9333
  • Long. (^o): -130.0138
  • Alt. (m): N/A
  • Depth (m): 1200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009300	Metagenome	320	Y
F018080	Metagenome	237	Y
F024889	Metagenome	204	Y
F030888	Metagenome	184	Y
F036294	Metagenome / Metatranscriptome	170	Y
F040720	Metagenome	161	Y
F088949	Metagenome / Metatranscriptome	109	Y
F089534	Metagenome	109	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0256913_10112519	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	1593
Ga0256913_10143882	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1400
Ga0256913_10233659	Not Available	1065
Ga0256913_10539040	Not Available	604
Ga0256913_10544465	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	600
Ga0256913_10571156	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobulbaceae → Candidatus Electrothrix → Candidatus Electrothrix marina	578
Ga0256913_10587791	Not Available	564
Ga0256913_10652337	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	519

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0256913_10112519	Ga0256913_101125192	F088949	MAETQVDQSQQVEQQAYVPTYRVKPEFKEAVLKAIGKFPFNQIQSIMSAINVEVMDHNTLTQVINVLGNFPYQNVAPVLSSINDYVEQIVEEDEETGE
Ga0256913_10143882	Ga0256913_101438824	F089534	MKKRKLNSKNPKYRKGEEEKLVVLKKVPLTGKAKGYGVWYKNEK
Ga0256913_10233659	Ga0256913_102336591	F024889	MNSITIGTSMIVGVAILYIFALSYVEGKIARQENEKLKKNIDKLDDKA
Ga0256913_10462084	Ga0256913_104620842	F009300	MIKWKKTTYPSTFIKLSDELAKVRSMLSADVYNKNTEKYRGNQEHSISQLGIFAELIARHLMENNKGIRYKAAPLLEQRPVVEADLIMEGIGELNYIDVKGIKSEGNALRVNFKAHNNPQKKITHYLFIQPLNALYARFCWFTHEQVSKWTVVMS
Ga0256913_10539040	Ga0256913_105390402	F040720	MKSIVLLIKKIKMKIYQLQTAKEFMEEPFIQQQNLTTEQLMQLYAEDVAKRFAVECVNEALGNKMEVSNALHLKIESMYKSIEWEY
Ga0256913_10544465	Ga0256913_105444652	F088949	MTKEIAQKETQQVEQQAYVPTYRVKPEFKQVVLKAVGKYPFNQIQSVMTAINVEVMDHNTLTQVINVLGNFPYQDVAPILASVNDYVEQIVEDEETK
Ga0256913_10571156	Ga0256913_105711561	F036294	MDRGSSDEAIVGVKPVADEDAVTYLRVKLSESDKEVGAEGWNM
Ga0256913_10587791	Ga0256913_105877911	F030888	MNKFFNESDENREYKYKILIYPNITYSKDLRKDSYIIVLENMIKSLNKIRNDIHFTIINPTYLD
Ga0256913_10652337	Ga0256913_106523372	F018080	MEYLDIEIFNHFLKVYTYIVWNKKYLLGEIVEDDMMKVLDKQQLIDFYHVGKTKFKVEKSKIEKYLKRDDK