NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300025642

3300025642: Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKL (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300025642 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0114820 | Gp0116305 | Ga0208648
Sample NameSaline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKL (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size444311389
Sequencing Scaffolds41
Novel Protein Genes43
Associated Families38

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1
Not Available17
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dependentiae → unclassified Candidatus Dependentiae → Candidatus Dependentiae bacterium1
All Organisms → cellular organisms → Bacteria5
All Organisms → Viruses → Predicted Viral2
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium ADurb.Bin2161
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfobacula → Desulfobacula toluolica1
All Organisms → Viruses1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → unclassified Marinobacter → Marinobacter sp. G113
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → unclassified Campylobacterota → Epsilonproteobacteria bacterium JGI 0002006-B182
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Bacteriovoracales1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSaline Lake Microbial Communities From Various Lakes In Antarctica
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biomesaline lakelake water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Hypersaline (saline)

Location Information
LocationAce Lake, Antarctica
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001849Metagenome / Metatranscriptome626Y
F003224Metagenome / Metatranscriptome499N
F003482Metagenome / Metatranscriptome484Y
F004896Metagenome419N
F008122Metagenome338N
F010230Metagenome306Y
F014478Metagenome262Y
F018113Metagenome236Y
F018704Metagenome / Metatranscriptome233Y
F022145Metagenome215Y
F029620Metagenome187N
F031722Metagenome181N
F034145Metagenome / Metatranscriptome175Y
F035622Metagenome / Metatranscriptome171Y
F035834Metagenome / Metatranscriptome171N
F039448Metagenome / Metatranscriptome163Y
F040946Metagenome / Metatranscriptome161N
F042665Metagenome157N
F043672Metagenome / Metatranscriptome156Y
F043706Metagenome155Y
F044910Metagenome153Y
F050310Metagenome145Y
F057145Metagenome136N
F060609Metagenome / Metatranscriptome132Y
F063346Metagenome129N
F064414Metagenome128Y
F069498Metagenome124Y
F070872Metagenome122Y
F073008Metagenome120Y
F075591Metagenome / Metatranscriptome118Y
F077915Metagenome117Y
F077964Metagenome117Y
F079376Metagenome / Metatranscriptome116Y
F088916Metagenome / Metatranscriptome109Y
F096357Metagenome104N
F097603Metagenome / Metatranscriptome104Y
F098516Metagenome / Metatranscriptome103Y
F102576Metagenome101Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0208648_1001278All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria21164Open in IMG/M
Ga0208648_1003430Not Available9955Open in IMG/M
Ga0208648_1003672All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dependentiae → unclassified Candidatus Dependentiae → Candidatus Dependentiae bacterium9403Open in IMG/M
Ga0208648_1008385All Organisms → cellular organisms → Bacteria5049Open in IMG/M
Ga0208648_1011865All Organisms → Viruses → Predicted Viral3953Open in IMG/M
Ga0208648_1013976All Organisms → cellular organisms → Bacteria3515Open in IMG/M
Ga0208648_1014147Not Available3485Open in IMG/M
Ga0208648_1014890All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon3364Open in IMG/M
Ga0208648_1017679All Organisms → cellular organisms → Bacteria2976Open in IMG/M
Ga0208648_1017798All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage2963Open in IMG/M
Ga0208648_1020231All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium2701Open in IMG/M
Ga0208648_1020481All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium ADurb.Bin2162680Open in IMG/M
Ga0208648_1023107All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfobacula → Desulfobacula toluolica2462Open in IMG/M
Ga0208648_1025606All Organisms → Viruses2294Open in IMG/M
Ga0208648_1031295All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1988Open in IMG/M
Ga0208648_1035592Not Available1816Open in IMG/M
Ga0208648_1036369Not Available1787Open in IMG/M
Ga0208648_1040390Not Available1660Open in IMG/M
Ga0208648_1046263Not Available1503Open in IMG/M
Ga0208648_1046543All Organisms → cellular organisms → Bacteria1496Open in IMG/M
Ga0208648_1068339All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → unclassified Marinobacter → Marinobacter sp. G111127Open in IMG/M
Ga0208648_1068425All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → unclassified Campylobacterota → Epsilonproteobacteria bacterium JGI 0002006-B181126Open in IMG/M
Ga0208648_1073417Not Available1068Open in IMG/M
Ga0208648_1078484All Organisms → Viruses → Predicted Viral1016Open in IMG/M
Ga0208648_1082591All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.978Open in IMG/M
Ga0208648_1094100Not Available887Open in IMG/M
Ga0208648_1095656Not Available877Open in IMG/M
Ga0208648_1099021Not Available854Open in IMG/M
Ga0208648_1099499All Organisms → cellular organisms → Bacteria851Open in IMG/M
Ga0208648_1112634Not Available776Open in IMG/M
Ga0208648_1128359All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria703Open in IMG/M
Ga0208648_1129172All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → unclassified Campylobacterota → Epsilonproteobacteria bacterium JGI 0002006-B18700Open in IMG/M
Ga0208648_1129633Not Available698Open in IMG/M
Ga0208648_1130115All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → unclassified Marinobacter → Marinobacter sp. G11696Open in IMG/M
Ga0208648_1147136Not Available636Open in IMG/M
Ga0208648_1150110Not Available626Open in IMG/M
Ga0208648_1152866All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → unclassified Marinobacter → Marinobacter sp. G11618Open in IMG/M
Ga0208648_1161493All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Bacteriovoracales593Open in IMG/M
Ga0208648_1166841Not Available579Open in IMG/M
Ga0208648_1173091Not Available563Open in IMG/M
Ga0208648_1189393Not Available527Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0208648_1001278Ga0208648_10012784F063346MYSTIYNKDKATRPPRLSEPTKGRRALSTARDGGQERLPHSTFDVERSMFTRLRRRQRRPGFDVQIVASEITTKPSYHVEITYTGQEF
Ga0208648_1003430Ga0208648_100343013F070872MKTQVKKWGDSKVLVLSPDFMKYMELKEGSWVDLSDLIKCKK
Ga0208648_1003672Ga0208648_10036726F022145MKEKQIKKENYTVQIGYSADAIEKKLLKFISKSGDEFEISAEELSSMLIGGVNQNTLEATFVETDKVNVVEVGRQLKCKMEKDMKKGEEFLINYAHPYPLEFAILEQVMGIAKINMDVPTFTLTKKYIDETKKKLKPEQENFIKKFYTSFKNVELDKK
Ga0208648_1008385Ga0208648_10083851F031722TTRTPTQKATKPRFYHEQAAAEKLGLSKETLRHWRVGYTVTSKGKRYTYPPKMKDGEGTTWKKEYPAKFSPILWDADFIDTLASALHTQRIAMGDLKP
Ga0208648_1011865Ga0208648_10118656F043672MDMIKQPEQLTAGVTMIGTSSWGSQTGGIGSIMGSTWSSKIIFDAQPDRVLSKYFIEFNDLMGNNDVTIVIPKIGDVNLMGGRAGSIEGVARVLTKFDSADNITVNLTSADVKLGGCSVSFETASATRVSIIEMAHKQLVRQYLKTIETDANAILESATIGASNAGSVFGGTTADNTAIATALATGDVIDVDKIVDMRIILMQKDFAKRPGEAILLMHPTQFKQLLKSSQFTNAAEFGAPTVVRKGVIEEYVGVMIETSTLCTVQSTSAAGHYCYMIDPSAAAGIVWKEKARVKVLTEDD
Ga0208648_1013976Ga0208648_10139762F001849MHLLLSPVLGMGGIWIGGGSVGILIVIVVVVLLLRR
Ga0208648_1014147Ga0208648_10141471F077915FELSKYIGVSATAGLFWPVMLLVIWVVSFLGFKQYSTSRAWTFASFFCSILGIFLAVLNLMAPKWMYLSIIMTLIGLVWLKLEAN
Ga0208648_1014890Ga0208648_10148905F064414MYSIIGITILLLCGFALWWFLKKRKTWNIKVEFKIPRNIKKVKTKAGLIKIIGTLNKEWGKGFYDAVKGSVFIKRKGKKPVAMKPFDVKQYLSTGNILTVVQIGIEDYRPIRDESYIELKDVNGKEGALVQAVIDTSESKSWKNTFERESKMTYSIKNWIAEHGALVAMGLVLLMNLIGFSIVIGRMPK
Ga0208648_1017679Ga0208648_10176795F102576MNDLLMLEKYFPEGNLEGGIDLANRLGWGISVQMAGDEYVVSSGDEPILRAEHKDALQSFIYGLGLAYAILPEKVFISLEKALKDL
Ga0208648_1017798Ga0208648_10177981F040946MYPQLKIESDNHETVEVDTLPVDFMMYEDLQGNRPASEQGMRLTIAYYYLEGKEPGDLKTVKSWARKNRVKVELVKDDADPFTQGVTPD
Ga0208648_1020231Ga0208648_10202313F075591MQDLAKLSELAEAEIETLRADGIDLTPAEIVEINALGHAVESPETRRLLARGAPVAIGGVYLWPMSLYAQDWFDRVGCQLDGNKQQTFALAYAMAHGRDAGEPLAMEGRDAEKTVKRWGKSLKCTFGELNVAVSQVLQQDEDAEQPPSETGGMTMGDFSAFLASACGGDPDFWERRCASGYTHAVLDCLCRQNSADGKKTMADPRIRAERALGWAVEKIKRDRAKIAGQT
Ga0208648_1020231Ga0208648_10202314F098516IDKATSFGALTDHFAILETVHDEGTLADIMVLVASSKVPRAKTRADAQDANEDIAASAYSGNDAGAIYEVSSTYALKSGTLDLSDLVIGELAVQIMAESLGLTTANGGWPQITVAGFLGLQTITAPTSFTNQFTLPAISVIGMKQAQVLGFTVSAGRLTGSGITFNCSMAEQLDGVGEPAAHGVSGGTGEVTADFVRIDETPAWALAAVLADSGDAAVFMAEVTQDPGEDQGQAAWHTAAGAASFNLARLAS
Ga0208648_1020481Ga0208648_10204811F044910MLHDAHTKKTSAAVAATVGTTEVVAANDDAYIYIHELIGDLGAAGNLTIMAGTRTLAAFTLDAGQGITEQDEPGMDGVPRFECRPGEAFILVVTGGTFNGSIDYSYRY
Ga0208648_1023107Ga0208648_10231071F079376MFDIVNTRQPGRPCASLEEKRVCRTTEEGGRQTRHRESDSLIVPVKAGNAAGGKEATHRSAT
Ga0208648_1025606Ga0208648_10256061F018704MSASNILAVTKIADGAAISGRTRVRGLYFTCTGTGSSFSLKNGATGAAAALVTITTPAAAGGYDLHIPEQGFLFDAGVFVDVADVQVTSVTLMFEGGAAA
Ga0208648_1031295Ga0208648_10312951F003224TGQLCTYCERFDREDVQVLAEIDKTWRIQATIYRKSLAIGGLFTADTLIDSIGLPDGHPNQIGALFRSWSSMGVITSMGNYVVSTRESNNGRSIRMWKRTA
Ga0208648_1035592Ga0208648_10355921F077964MLYSTYAFAQTAESKSSPPTIQKIAPNSYYYNYNITEVQKEPEGGGEAETFYQYNYVKIKGKPTKRKVLDAIEAAESSTVTAEVEAVATERSTAKTQLADIAALSYAQVDNYVDNTFGNLPVAQKTALKKLYKTVLAMLKQMDLSK
Ga0208648_1036369Ga0208648_10363692F035622MAGAKKGSCGGTPRVGKKGDTKPSRGGRGRGAGNGRRRK
Ga0208648_1040390Ga0208648_10403901F050310GFIIGIVIVGVTLVIGIYVAATIAGTMVDGSSAQNASNSLVTALAGGSAWITILVVVGFAVIVLGMLSEGLGKAAGGMSGPVY
Ga0208648_1046263Ga0208648_10462632F004896MTLQITLAGSVIDLDLFEFNVTVAHGRSDVTSSPTASNTQIVLRGDTGPLLELADTVAISFDGVDRFTGAISDLNVSFISTVTPTAITTITAMGNLAKLGYTDVGASGYIEQSARQRVEGILDATGLDYLNAGDPDITLYAILEADAQPSTALDAL
Ga0208648_1046543Ga0208648_10465434F063346TRPPRLSEPTKGRRALSTARDDGQERLPHSTFDVERSMFTRLRRRQRRPWFDVQIVASEITTKPSYHVEITYTGQEF
Ga0208648_1062920Ga0208648_10629201F097603RPFGIIYSVDPEGVREVQFSDVKASAYKEEELLKGDMQYASGVDDFSQGVGGGAGSATEVRHLRESTLERVRMFVNHLGDAYGDVLRYWMDLSRQLMSEKMTIRIVGADGKPEYPLIEKDDLLGMYDYKAKVLPSIAGQDEVKKKQDMDLYQLLINLPFVDPQKLLPRSLPIGDGH
Ga0208648_1068339Ga0208648_10683391F096357MNKLLDHPIIKRLHRESSVTLTDLIDRKLFIEPPAEPCGHIHPSAWDLFYQEDLQPPESERLRAARKRNPRLILAAALVVASVTGKLSKEQKNMAFDFTRYVEAHEYELVQLVRSRTGGVNTAEKRKEEAAERMETAHRLWLKLDKPERDRCAIIAKRM
Ga0208648_1068425Ga0208648_10684252F010230KLVPLLVSINGNELRLVQFCQVEVKLVPSLVSINGNELRLLQPYQVSLKLVPLLVSINGNELRLVQDRQVKVKSVPLLVSINGNEVRLLQLVQVARK
Ga0208648_1073417Ga0208648_10734171F031722MHIDETATTQTPTPTQKVTKPRFYHEQAAAEKLGLSKETLRHWRVGYTVKSKGTRYTYPPKMKDGEGTTWKKEYPAKFSPILWDADFIDTLASALHTQRIVMGDLKP
Ga0208648_1078484Ga0208648_10784841F043706MRILYGILSTALLINLLFMALDTGQPSIWVLILCAVAIIFAGGAENRGSGR
Ga0208648_1082591Ga0208648_10825911F018113HGKGGEMTRVGVLEFSVIDGTYPDWRRVVAKGDGGTSSISYDPALLAKLIKAADVIKKGQAVRLTGGATPGDPIKVEFKGLGRLRGTLYPVRWKGV
Ga0208648_1094100Ga0208648_10941004F057145AESALDALELLSFTEGFEAATNALDELSDIKHNFDEQQVAEILRWAAKELRGENA
Ga0208648_1095656Ga0208648_10956564F042665SFATLILLSAMVTVVVTLGVLPLLALTGSVAGLFFAPAAGMAAGYSTARWLGGYIEDKKN
Ga0208648_1099021Ga0208648_10990212F060609MERKKMRESLKPTTDSLTRREFCSKAIKRSSVVAAAGVSGYLVYKKPAIRSFFGASDAYAATTGPGKFSLKGDSN
Ga0208648_1099499Ga0208648_10994992F039448MNTTKAIELAMAETIRTYAEMGENVTIRAWRSLASDGSWKENPDRKFPMIDVRCSTPATDDNESTRQVQCAILMGTKTDDDKSHAFISSMEEAVQGVCDTMFAQFRTGVFTGEELAYFLARVVAETSTDAFQFGGLTFGDGLAPADDNGINMIG
Ga0208648_1112634Ga0208648_11126341F069498DYEKYLEKHGVIEVDAFDEMFGKPDEEPEPDNPEMNLEQSMAGGEDD
Ga0208648_1128359Ga0208648_11283591F088916NIKGSDLPRIWADKINIIPDKTYTVIIQPQEERQSLEKIMSQISRNAKARGMTPDILEDILGEKIKHTL
Ga0208648_1129172Ga0208648_11291721F014478ADVSMSGKLVRLLQLDQALSKLVPEDVSIRGKLVRLVQLNQALSKLVPEDVSMSGKLVRLLQLYQALSKLVPEDVSMSGKLVRLVQLYQATEKLVPDDVSMSGKLVRLLQLRQA
Ga0208648_1129633Ga0208648_11296331F003482MEESDILSLKQQEEFKNIIHNTKNLIKRDTGNIPSADELNDANKGLWVEHDSDNFNKMFDGLLDYCADEECYDNLDWNSVNYEVYGADYYEEKFPGFSDEVYEILAKSTEEENKVVDNRIPPLKITEGEFIVKFDXTRILFS
Ga0208648_1130115Ga0208648_11301151F096357MNNLLDHPIIKRLHRESSVTLTDLLDRKLFIEPPAEPCGHIHPSAWDLFYQEDLAQAESERLRAARKRNPRLILAAALVVAGATGKLSEEQKNMAFYFTRYVEAHEYELVQLVRSRTGGVNTAEKRKEEAAERMETAHSRWLKLDTPERDKCAIIGKRMGYKANTVREWRRKGWRSG
Ga0208648_1147136Ga0208648_11471363F035834KMPQITITGDVNLIGWEGKRLSIWENYEVPGFPKPFSRLWTCWFDMSQAEHLQEQDWVEITGELSTKMGKYTPKDSTIEKDVVEHHIQNARLVQVKTKAQQASNAASVGGFENAPF
Ga0208648_1150110Ga0208648_11501101F073008YINLIEVDGEVKFEYGYELDKSKTSLHDISMFLSFLDMLQKRAEQDFEDRVNVQKKEFSIEKE
Ga0208648_1152866Ga0208648_11528661F096357MNKLLDHPIIKRLHRESSVTLTDLLDRKLFIEPPAEPCGYRHPSVWFLCYQEDLAQAEHERMRAARRQNPSLIHAAALVVAGATGKLSEEQKTMAFYFTRYVEAREYELDQLVRRSTGSHNSAEIRKEEAAERMETAHRLWLKLDTPERDRCAIIAKRMGYPVDTVRKWRRKGWRSG
Ga0208648_1161493Ga0208648_11614931F029620QQLRMLPASSGGAAQVFPLRQGLIDITTGTVTDPVSGRRPLIAHCVADGSLTLTWSDNSTTVVSFIAGDDFSMVEAEAVAVTTGSFHFA
Ga0208648_1166841Ga0208648_11668412F029620QVFPLRQGLIDITTGTVTDPTSGKRPLIAHCVADGSLTLTWQDTSATVVSFIAGDDFSMVEAEAVAVTTGSFHFA
Ga0208648_1173091Ga0208648_11730911F008122LEAPGVIFAPTWSKTLTPLINDVTVTYGPDLSVNQTDSASITQYGRREYRLDTGIKTITDATTRAAGIMTAQANGLWNLGQISVLVDQLDETDTTALLDLVSGSLVTVRGLPASGPYPDFNGIVEGWTDSYNNGQHIMTLSISDPRFSLQVLQWGQVTPTFTWSEVGPGAQWFEIVTQSDLVRL
Ga0208648_1189393Ga0208648_11893931F034145AGIGHPPTAVIFSDPSHTEWTKWDYRLIKAHYIIQDWYRDGIPLWWDESDRVTFDAKARTSKSRAAIERAQEVDGKKKSKSYGKYWVAEPRVMDGGELPSREEFLDEQEAKKGTPQKPPRSKNQHILQGKK

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