Sample 3300025566

Overview

Basic Information
IMG/M Taxon OID	3300025566 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0111376 \| Gp0101327 \| Ga0210140
Sample Name	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - China_Bullhead_CordB_D2 (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	204512127
Sequencing Scaffolds	35
Novel Protein Genes	37
Associated Families	32

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	5
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	3
Not Available	13
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	4
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → methanotrophic bacterial endosymbiont of Bathymodiolus sp.	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium PC51MH44	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Tolypothrichaceae → Tolypothrix → Tolypothrix campylonemoides → Tolypothrix campylonemoides VB511288	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium SM23_30	1
All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Lokiarchaeota → unclassified Lokiarchaeota → Candidatus Lokiarchaeota archaeon	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Olavius algarvensis Delta 1 endosymbiont	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands → Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	USA: San Francisco Bay, California
Coordinates	Lat. (^o)	38.003361	Long. (^o)	-122.468277	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F004052	Metagenome / Metatranscriptome	455	Y
F005815	Metagenome / Metatranscriptome	389	Y
F012874	Metagenome / Metatranscriptome	276	Y
F021303	Metagenome / Metatranscriptome	219	Y
F022216	Metagenome / Metatranscriptome	215	Y
F026198	Metagenome	198	Y
F026568	Metagenome / Metatranscriptome	197	Y
F033261	Metagenome / Metatranscriptome	178	Y
F037736	Metagenome / Metatranscriptome	167	Y
F041201	Metagenome / Metatranscriptome	160	Y
F042909	Metagenome	157	Y
F044508	Metagenome / Metatranscriptome	154	Y
F047065	Metagenome / Metatranscriptome	150	Y
F051933	Metagenome / Metatranscriptome	143	Y
F052283	Metagenome / Metatranscriptome	143	Y
F053306	Metagenome / Metatranscriptome	141	Y
F069658	Metagenome	123	Y
F070063	Metagenome	123	Y
F070125	Metagenome / Metatranscriptome	123	N
F073570	Metagenome	120	Y
F076890	Metagenome / Metatranscriptome	117	N
F080060	Metagenome / Metatranscriptome	115	Y
F080661	Metagenome	115	Y
F083665	Metagenome	112	N
F084253	Metagenome	112	Y
F087950	Metagenome / Metatranscriptome	110	Y
F087951	Metagenome	110	Y
F088283	Metagenome / Metatranscriptome	109	Y
F096594	Metagenome	104	Y
F097364	Metagenome	104	Y
F097602	Metagenome / Metatranscriptome	104	Y
F098240	Metagenome	104	Y

Family

Category

Number of Sequences

3D Structure?

F004052

Metagenome / Metatranscriptome

455

F005815

Metagenome / Metatranscriptome

389

F012874

Metagenome / Metatranscriptome

276

F021303

Metagenome / Metatranscriptome

219

F022216

Metagenome / Metatranscriptome

215

F026198

Metagenome

198

F026568

Metagenome / Metatranscriptome

197

F033261

Metagenome / Metatranscriptome

178

F037736

Metagenome / Metatranscriptome

167

F041201

Metagenome / Metatranscriptome

160

F042909

Metagenome

157

F044508

Metagenome / Metatranscriptome

154

F047065

Metagenome / Metatranscriptome

150

F051933

Metagenome / Metatranscriptome

143

F052283

Metagenome / Metatranscriptome

143

F053306

Metagenome / Metatranscriptome

141

F069658

Metagenome

123

F070063

Metagenome

123

F070125

Metagenome / Metatranscriptome

123

F073570

Metagenome

120

F076890

Metagenome / Metatranscriptome

117

F080060

Metagenome / Metatranscriptome

115

F080661

Metagenome

115

F083665

Metagenome

112

F084253

Metagenome

112

F087950

Metagenome / Metatranscriptome

110

F087951

Metagenome

110

F088283

Metagenome / Metatranscriptome

109

F096594

Metagenome

104

F097364

Metagenome

104

F097602

Metagenome / Metatranscriptome

104

F098240

Metagenome

104

Scaffold	Taxonomy	Length	IMG/M Link
Ga0210140_1003652	All Organisms → cellular organisms → Bacteria	2272	Open in IMG/M
Ga0210140_1005277	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	1946	Open in IMG/M
Ga0210140_1006244	All Organisms → cellular organisms → Bacteria	1817	Open in IMG/M
Ga0210140_1009925	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	1511	Open in IMG/M
Ga0210140_1016923	Not Available	1230	Open in IMG/M
Ga0210140_1020537	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	1138	Open in IMG/M
Ga0210140_1025346	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	1047	Open in IMG/M
Ga0210140_1028461	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → methanotrophic bacterial endosymbiont of Bathymodiolus sp.	999	Open in IMG/M
Ga0210140_1028913	Not Available	992	Open in IMG/M
Ga0210140_1029919	Not Available	979	Open in IMG/M
Ga0210140_1030390	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	972	Open in IMG/M
Ga0210140_1039893	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium PC51MH44	871	Open in IMG/M
Ga0210140_1041933	Not Available	854	Open in IMG/M
Ga0210140_1044906	Not Available	830	Open in IMG/M
Ga0210140_1046649	Not Available	817	Open in IMG/M
Ga0210140_1048989	All Organisms → cellular organisms → Bacteria	801	Open in IMG/M
Ga0210140_1065269	Not Available	710	Open in IMG/M
Ga0210140_1073911	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Tolypothrichaceae → Tolypothrix → Tolypothrix campylonemoides → Tolypothrix campylonemoides VB511288	672	Open in IMG/M
Ga0210140_1075140	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	668	Open in IMG/M
Ga0210140_1078214	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	657	Open in IMG/M
Ga0210140_1081474	Not Available	645	Open in IMG/M
Ga0210140_1081726	All Organisms → cellular organisms → Bacteria	644	Open in IMG/M
Ga0210140_1083224	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	639	Open in IMG/M
Ga0210140_1087216	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium SM23_30	627	Open in IMG/M
Ga0210140_1089214	All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Lokiarchaeota → unclassified Lokiarchaeota → Candidatus Lokiarchaeota archaeon	621	Open in IMG/M
Ga0210140_1096878	Not Available	599	Open in IMG/M
Ga0210140_1103699	All Organisms → cellular organisms → Bacteria	581	Open in IMG/M
Ga0210140_1108288	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	570	Open in IMG/M
Ga0210140_1115856	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Olavius algarvensis Delta 1 endosymbiont	554	Open in IMG/M
Ga0210140_1120815	Not Available	543	Open in IMG/M
Ga0210140_1127560	All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Lokiarchaeota → unclassified Lokiarchaeota → Candidatus Lokiarchaeota archaeon	530	Open in IMG/M
Ga0210140_1135337	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	516	Open in IMG/M
Ga0210140_1135933	Not Available	515	Open in IMG/M
Ga0210140_1138209	Not Available	511	Open in IMG/M
Ga0210140_1144698	Not Available	500	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0210140_1003652

All Organisms → cellular organisms → Bacteria

2272

Open in IMG/M

Ga0210140_1005277

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae

1946

Open in IMG/M

Ga0210140_1006244

All Organisms → cellular organisms → Bacteria

1817

Open in IMG/M

Ga0210140_1009925

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales

1511

Open in IMG/M

Ga0210140_1016923

Not Available

1230

Open in IMG/M

Ga0210140_1020537

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium

1138

Open in IMG/M

Ga0210140_1025346

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales

1047

Open in IMG/M

Ga0210140_1028461

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → methanotrophic bacterial endosymbiont of Bathymodiolus sp.

999

Open in IMG/M

Ga0210140_1028913

Not Available

992

Open in IMG/M

Ga0210140_1029919

Not Available

979

Open in IMG/M

Ga0210140_1030390

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales

972

Open in IMG/M

Ga0210140_1039893

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium PC51MH44

871

Open in IMG/M

Ga0210140_1041933

Not Available

854

Open in IMG/M

Ga0210140_1044906

Not Available

830

Open in IMG/M

Ga0210140_1046649

Not Available

817

Open in IMG/M

Ga0210140_1048989

All Organisms → cellular organisms → Bacteria

801

Open in IMG/M

Ga0210140_1065269

Not Available

710

Open in IMG/M

Ga0210140_1073911

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Tolypothrichaceae → Tolypothrix → Tolypothrix campylonemoides → Tolypothrix campylonemoides VB511288

672

Open in IMG/M

Ga0210140_1075140

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria

668

Open in IMG/M

Ga0210140_1078214

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium

657

Open in IMG/M

Ga0210140_1081474

Not Available

645

Open in IMG/M

Ga0210140_1081726

All Organisms → cellular organisms → Bacteria

644

Open in IMG/M

Ga0210140_1083224

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium

639

Open in IMG/M

Ga0210140_1087216

All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium SM23_30

627

Open in IMG/M

Ga0210140_1089214

All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Lokiarchaeota → unclassified Lokiarchaeota → Candidatus Lokiarchaeota archaeon

621

Open in IMG/M

Ga0210140_1096878

Not Available

599

Open in IMG/M

Ga0210140_1103699

All Organisms → cellular organisms → Bacteria

581

Open in IMG/M

Ga0210140_1108288

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium

570

Open in IMG/M

Ga0210140_1115856

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Olavius algarvensis Delta 1 endosymbiont

554

Open in IMG/M

Ga0210140_1120815

Not Available

543

Open in IMG/M

Ga0210140_1127560

All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Lokiarchaeota → unclassified Lokiarchaeota → Candidatus Lokiarchaeota archaeon

530

Open in IMG/M

Ga0210140_1135337

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium

516

Open in IMG/M

Ga0210140_1135933

Not Available

515

Open in IMG/M

Ga0210140_1138209

Not Available

511

Open in IMG/M

Ga0210140_1144698

Not Available

500

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0210140_1003652	Ga0210140_10036523	F052283	MNTQQKSVIVGAILGATMGALGGYLFTRGLDVPREEEEGFSLSSLPPGAIVSLIISVMAVLRGIAELGEQV
Ga0210140_1005277	Ga0210140_10052773	F084253	LINAAQGFAVRRTPVRRSRKPAENADQGKKGHLWMDTHYERPVED
Ga0210140_1006244	Ga0210140_10062441	F073570	NITLHQMFQNRVSVGPLNDSQIDSKKSSHKYLIENKSIVYEKYDRQGKLISRVPWSLKPIDEKA
Ga0210140_1009925	Ga0210140_10099253	F088283	MKTQVLLFVPFLAACASCATDADVAGMYAPSCVAFEGSTIELTDQRFTWDKFTDEVTVDAAGGEVDPFPGFPVRGTYTIEGDELRLRTDVGELAAVLHLVRRPGQVYLLTAEEFEAWQKGGAVPNCALLQGAWE
Ga0210140_1016923	Ga0210140_10169231	F047065	MTNLLNKFSEAAKVVSSSKTHMWECVYGAYVDHLRDISTDSLPEEIQIFYDSIKLRITSVEAFGHIDNDEACYIANDIMYMADVISSGLRKP
Ga0210140_1019054	Ga0210140_10190542	F076890	MIGTRSVAAMLVAMGALGTSACSTLEVDDYCRYSETRSIRTADPESLALVLGVQAGRARQTPFVVIRSLSESTPGASVTLRTTPAAHPMPMGLDESRCARVDWSTYTLAVDPEEWNAFWQDDRNSPFEIGIAFVEDFHPLPLSAFGAAILDTGSADYLVSCGCFWR
Ga0210140_1020537	Ga0210140_10205371	F053306	MKTKLLSTIASTLILSACGQPEPINYESLVWVNNYYVEHPVASLSATAGGWLFRGAREFGKEIRVGFLVPNPMNPDPAKRQAVLNTICPAKSEIIWKVLPDKNRLVISVWTEDNQFKESVIC
Ga0210140_1025346	Ga0210140_10253461	F088283	MKTKALFLFPLLAACAGCATDADVVGTYVPSCVAYEGNTIELSGQRFTWDKFTDEVMVDDAGNKLDPFPGFPVRGSYAIEDDVLRLTTDVGELAGELYLVRRPGQIYLLTEAEFGAWQKDGAVPDCALLLGAGD
Ga0210140_1028461	Ga0210140_10284611	F097602	VTILPSEGPSGLGRCNCDTLSPKRSSNVDVMNRGSADEAVVIVKFGAKESMVTWRRIKHRISDIKLEVKGGTRKRSCLLIINWWSEIGLIGADEYSRRKQ
Ga0210140_1028913	Ga0210140_10289131	F087951	MSESENVIDRELFLEKFEKMSLKIEQLTLEISKMKEKLDKTNKINRSFGLEALRNSKPLTFAREIHGIKSPTKLYILSIRTVSELWKGRKNDFLLTIRQQEKETHMDLKALGIRIPIDDMKNLTTLAKEVLSMLYISSELKGIEVTEILRDVVSQINKDGQAMVREVKENLGLQ
Ga0210140_1029919	Ga0210140_10299191	F080060	RTDPMTPKAHDGAARIGAYTLICRFICIVLVAGPLVYFSLVTDGSAAEFLILVLLAPVAGLVLVANSLFCLFRYRKVESFWVGLAFILVGVTGILEAWYFLPKFRM
Ga0210140_1030390	Ga0210140_10303902	F088283	MKLKELALPCLLAVAAGCAADTNIAGKYMPSCVAFEGNTIELSESRFTWDKFTDEVTVDDDGNKVDPFPGFPVRGTYVVEDQVVRLVTDVGELAGEMHLVERPGQVYLLNGEEFGAWQRDGTVPECALLLAAAE
Ga0210140_1039893	Ga0210140_10398931	F087950	MGFGMMQCWINGSATGGSDDNIKMVNILLKTNIPSFHPSIIPFPGEI
Ga0210140_1041012	Ga0210140_10410122	F076890	MSTIGTRSVAAMLVTMGALGTSACSTLEVDDYCRYSETRSIREADPESLALLLGVKAGYETLTPFVVVRSLSESRPGASVTLHTTPAAHPMPIGLDESRCARVDWNTYTLTVDPAEWNAFWQDDTNSPFEIGIAFLEGFHPLPLSAFGASILDSDS
Ga0210140_1041933	Ga0210140_10419331	F004052	MRINTAIFQLVLTVLLTSCDQQHPASGIDPGLGLDCFESHRLPPGTQYEGVEKLTENRLTIKIMNGVEVVTLECGLNPDGTLQVTGE
Ga0210140_1044906	Ga0210140_10449062	F026198	MDIDIAIIIAGVLIMVGGIVGGGAIYAGLEKLTDAIKNKAK
Ga0210140_1046649	Ga0210140_10466492	F051933	MLGFGHQTVFGLCLALVTLAAVSVVCVALLFAERQDINLLQEHINSLRQENTVLRSELEDFRSSRLVQQEVPTQPTD
Ga0210140_1048989	Ga0210140_10489892	F070125	VTSADDRRRWIEALHAYRDDSERLFALVASLASLLDRTLVVETMVSVLGVTAVHDGDCVIFDDFAIRFGSDDRVRSVFRTIDGSVKGD
Ga0210140_1065269	Ga0210140_10652691	F097364	KLGEAASVEIRPSGLLMDADGWYYEESLDAECSLRTIRVQQDRPGEWYVRNSNCQIAELNSPSRASEVLSFFTGSFRWLRFEREAENGHGPGAIKIIGTFLDGEGAERESHLGYVEAAAAKSLVQQDVRRLWGRIRCLRPPGLGRRPNFCLRFDLLVELDEKIFEDDVKVDARPEDFLPLSS
Ga0210140_1073911	Ga0210140_10739112	F022216	VSDRPASSGRTDEQRRRIRRTTLVLALVALGIYVAFIASGVMQARQ
Ga0210140_1075140	Ga0210140_10751402	F005815	MTMNVTRLRTYWTTDEAATAIDFLDNLRDVLWETYGEQIIQMHREVHDEQLRERNQGEFMFDDDIF
Ga0210140_1078214	Ga0210140_10782142	F026568	MHKLTPHKELYDPFYHYTRGVLYFDEERYTFTAYRMPYKELDDKSWRTEQAFKADYRQLIDRKYGS
Ga0210140_1081474	Ga0210140_10814742	F041201	NRILVQDRGGAEFKTGGILLYVEDFKRGANKDIGPKDIFEMGSKEKL
Ga0210140_1081726	Ga0210140_10817262	F042909	MIELLNFIGSLNLWTFIVIWTSTIFLVIFISLLLFSVRQMNKETIKISEKVKILIEELSKKKLKLGNHDNKFF
Ga0210140_1083224	Ga0210140_10832241	F021303	PRSGGVFFDAGDRPVNSCIVGSMEEQPVSTDVRGWRANVLDHAFEFVELVYREAPVEYQRLVASGRFRPELERGATFNHGKLYAYAEFSVFRREFLNRFPDASPAACINAFSGLLLKNDISIHNLVEFIEGPDDSEQLRLNSPGS
Ga0210140_1087216	Ga0210140_10872162	F098240	MKPDAKEALVFQDEMEIHRHPTLTRMWGLVGQQPE
Ga0210140_1089214	Ga0210140_10892141	F069658	NEIFRLVSTPGVEIEDIPDRINKVFNIELNYDEVMKILSDEYLKHNLDYGRRLCCRF
Ga0210140_1096878	Ga0210140_10968781	F073570	MNEPIIQIVGILNTTFHQMNQNRVPVGSLTDAQVDNKKTSHKYTIENDLIVYEKYDRHGKLISRVPWSLKPIDEKA
Ga0210140_1103699	Ga0210140_11036991	F033261	DDREIDAQALLNEYGDHWGQETAHRIGKHDLYLDILPPGYVLKTQRDDQGELQREVTFDQTAFFLSGWLRCLVFNLMTRFAEEMGGEYTKMWAGTLLRKFIRRPATLYLVGKDLHVVFEPFPGQDELQPLLDKLNAKRTALPWLNNLVVQFSIAQDESVHPLTEPEKRNRLFGDG
Ga0210140_1108288	Ga0210140_11082882	F070063	VPGGPVEMEVSFNVGVQFGLTDETSDSALKFQGMLEF
Ga0210140_1115856	Ga0210140_11158561	F037736	VPYRVQLDGLQILWLLANPLRTHGIGESGSKTITGWLLMGAAGTNQIWWLDTNPFTGLLLHPKSYRIMHLPFVHSNVFFFYPLLLHLLKKI
Ga0210140_1120815	Ga0210140_11208151	F080661	MNSFERIWTALNLEEPDRIPTHTINIDGNVADKILGKPEKTAFDIFDEMEKNYPDEWVEKINQILDDIEITVFTKAVRAGYELGFDGVGIQYIPFILESQTEMTDIFGKRHKVRNIDGNPYPDYYGGYIKNRKDWEAYPKPD
Ga0210140_1127560	Ga0210140_11275601	F083665	MFLNYNSENLQKEEFQEHLRWFEAEFDEIFQNSSVEPTEYERNVANSLLNKLSESINQCQDEKLLYDLVSTLNSIEKKHPALF
Ga0210140_1135337	Ga0210140_11353372	F022216	GRQVSDRPASSGPTDEQRRRIRRTTLVLALVALGIYVAFIASGVMQARQ
Ga0210140_1135933	Ga0210140_11359331	F012874	MPAKAGIQNYLKKLYSRLRGNDAKGRFKTFYEGIKN
Ga0210140_1138209	Ga0210140_11382092	F044508	FIDQVIIKTNRSDKTEIKKILKISGHQQRWPWPLPGAILIPPALLVVADFQP
Ga0210140_1144698	Ga0210140_11446981	F096594	MAYVVITGSFPAHVGMEVGKKFLKLEKLPDYIKTEHVFNTAAGDYAFFTIYKIEDDSKYFDALKAITKRFSGYMDIVGYKYTLHP

Scaffold ID

Protein ID

Family

Sequence

Ga0210140_1003652

Ga0210140_10036523

F052283

MNTQQKSVIVGAILGATMGALGGYLFTRGLDVPREEEEGFSLSSLPPGAIVSLIISVMAVLRGIAELGEQV

Ga0210140_1005277

Ga0210140_10052773

F084253

LINAAQGFAVRRTPVRRSRKPAENADQGKKGHLWMDTHYERPVED

Ga0210140_1006244

Ga0210140_10062441

F073570

NITLHQMFQNRVSVGPLNDSQIDSKKSSHKYLIENKSIVYEKYDRQGKLISRVPWSLKPIDEKA

Ga0210140_1009925

Ga0210140_10099253

F088283

MKTQVLLFVPFLAACASCATDADVAGMYAPSCVAFEGSTIELTDQRFTWDKFTDEVTVDAAGGEVDPFPGFPVRGTYTIEGDELRLRTDVGELAAVLHLVRRPGQVYLLTAEEFEAWQKGGAVPNCALLQGAWE

Ga0210140_1016923

Ga0210140_10169231

F047065

MTNLLNKFSEAAKVVSSSKTHMWECVYGAYVDHLRDISTDSLPEEIQIFYDSIKLRITSVEAFGHIDNDEACYIANDIMYMADVISSGLRKP

Ga0210140_1019054

Ga0210140_10190542

F076890

MIGTRSVAAMLVAMGALGTSACSTLEVDDYCRYSETRSIRTADPESLALVLGVQAGRARQTPFVVIRSLSESTPGASVTLRTTPAAHPMPMGLDESRCARVDWSTYTLAVDPEEWNAFWQDDRNSPFEIGIAFVEDFHPLPLSAFGAAILDTGSADYLVSCGCFWR

Ga0210140_1020537

Ga0210140_10205371

F053306

MKTKLLSTIASTLILSACGQPEPINYESLVWVNNYYVEHPVASLSATAGGWLFRGAREFGKEIRVGFLVPNPMNPDPAKRQAVLNTICPAKSEIIWKVLPDKNRLVISVWTEDNQFKESVIC

Ga0210140_1025346

Ga0210140_10253461

F088283

MKTKALFLFPLLAACAGCATDADVVGTYVPSCVAYEGNTIELSGQRFTWDKFTDEVMVDDAGNKLDPFPGFPVRGSYAIEDDVLRLTTDVGELAGELYLVRRPGQIYLLTEAEFGAWQKDGAVPDCALLLGAGD

Ga0210140_1028461

Ga0210140_10284611

F097602

VTILPSEGPSGLGRCNCDTLSPKRSSNVDVMNRGSADEAVVIVKFGAKESMVTWRRIKHRISDIKLEVKGGTRKRSCLLIINWWSEIGLIGADEYSRRKQ

Ga0210140_1028913

Ga0210140_10289131

F087951

MSESENVIDRELFLEKFEKMSLKIEQLTLEISKMKEKLDKTNKINRSFGLEALRNSKPLTFAREIHGIKSPTKLYILSIRTVSELWKGRKNDFLLTIRQQEKETHMDLKALGIRIPIDDMKNLTTLAKEVLSMLYISSELKGIEVTEILRDVVSQINKDGQAMVREVKENLGLQ

Ga0210140_1029919

Ga0210140_10299191

F080060

RTDPMTPKAHDGAARIGAYTLICRFICIVLVAGPLVYFSLVTDGSAAEFLILVLLAPVAGLVLVANSLFCLFRYRKVESFWVGLAFILVGVTGILEAWYFLPKFRM

Ga0210140_1030390

Ga0210140_10303902

F088283

MKLKELALPCLLAVAAGCAADTNIAGKYMPSCVAFEGNTIELSESRFTWDKFTDEVTVDDDGNKVDPFPGFPVRGTYVVEDQVVRLVTDVGELAGEMHLVERPGQVYLLNGEEFGAWQRDGTVPECALLLAAAE

Ga0210140_1039893

Ga0210140_10398931

F087950

MGFGMMQCWINGSATGGSDDNIKMVNILLKTNIPSFHPSIIPFPGEI

Ga0210140_1041012

Ga0210140_10410122

F076890

MSTIGTRSVAAMLVTMGALGTSACSTLEVDDYCRYSETRSIREADPESLALLLGVKAGYETLTPFVVVRSLSESRPGASVTLHTTPAAHPMPIGLDESRCARVDWNTYTLTVDPAEWNAFWQDDTNSPFEIGIAFLEGFHPLPLSAFGASILDSDS

Ga0210140_1041933

Ga0210140_10419331

F004052

MRINTAIFQLVLTVLLTSCDQQHPASGIDPGLGLDCFESHRLPPGTQYEGVEKLTENRLTIKIMNGVEVVTLECGLNPDGTLQVTGE

Ga0210140_1044906

Ga0210140_10449062

F026198

MDIDIAIIIAGVLIMVGGIVGGGAIYAGLEKLTDAIKNKAK

Ga0210140_1046649

Ga0210140_10466492

F051933

MLGFGHQTVFGLCLALVTLAAVSVVCVALLFAERQDINLLQEHINSLRQENTVLRSELEDFRSSRLVQQEVPTQPTD

Ga0210140_1048989

Ga0210140_10489892

F070125

VTSADDRRRWIEALHAYRDDSERLFALVASLASLLDRTLVVETMVSVLGVTAVHDGDCVIFDDFAIRFGSDDRVRSVFRTIDGSVKGD

Ga0210140_1065269

Ga0210140_10652691

F097364

KLGEAASVEIRPSGLLMDADGWYYEESLDAECSLRTIRVQQDRPGEWYVRNSNCQIAELNSPSRASEVLSFFTGSFRWLRFEREAENGHGPGAIKIIGTFLDGEGAERESHLGYVEAAAAKSLVQQDVRRLWGRIRCLRPPGLGRRPNFCLRFDLLVELDEKIFEDDVKVDARPEDFLPLSS

Ga0210140_1073911

Ga0210140_10739112

F022216

VSDRPASSGRTDEQRRRIRRTTLVLALVALGIYVAFIASGVMQARQ

Ga0210140_1075140

Ga0210140_10751402

F005815

MTMNVTRLRTYWTTDEAATAIDFLDNLRDVLWETYGEQIIQMHREVHDEQLRERNQGEFMFDDDIF

Ga0210140_1078214

Ga0210140_10782142

F026568

MHKLTPHKELYDPFYHYTRGVLYFDEERYTFTAYRMPYKELDDKSWRTEQAFKADYRQLIDRKYGS

Ga0210140_1081474

Ga0210140_10814742

F041201

NRILVQDRGGAEFKTGGILLYVEDFKRGANKDIGPKDIFEMGSKEKL

Ga0210140_1081726

Ga0210140_10817262

F042909

MIELLNFIGSLNLWTFIVIWTSTIFLVIFISLLLFSVRQMNKETIKISEKVKILIEELSKKKLKLGNHDNKFF

Ga0210140_1083224

Ga0210140_10832241

F021303

PRSGGVFFDAGDRPVNSCIVGSMEEQPVSTDVRGWRANVLDHAFEFVELVYREAPVEYQRLVASGRFRPELERGATFNHGKLYAYAEFSVFRREFLNRFPDASPAACINAFSGLLLKNDISIHNLVEFIEGPDDSEQLRLNSPGS

Ga0210140_1087216

Ga0210140_10872162

F098240

MKPDAKEALVFQDEMEIHRHPTLTRMWGLVGQQPE

Ga0210140_1089214

Ga0210140_10892141

F069658

NEIFRLVSTPGVEIEDIPDRINKVFNIELNYDEVMKILSDEYLKHNLDYGRRLCCRF

Ga0210140_1096878

Ga0210140_10968781

F073570

MNEPIIQIVGILNTTFHQMNQNRVPVGSLTDAQVDNKKTSHKYTIENDLIVYEKYDRHGKLISRVPWSLKPIDEKA

Ga0210140_1103699

Ga0210140_11036991

F033261

DDREIDAQALLNEYGDHWGQETAHRIGKHDLYLDILPPGYVLKTQRDDQGELQREVTFDQTAFFLSGWLRCLVFNLMTRFAEEMGGEYTKMWAGTLLRKFIRRPATLYLVGKDLHVVFEPFPGQDELQPLLDKLNAKRTALPWLNNLVVQFSIAQDESVHPLTEPEKRNRLFGDG

Ga0210140_1108288

Ga0210140_11082882

F070063

VPGGPVEMEVSFNVGVQFGLTDETSDSALKFQGMLEF

Ga0210140_1115856

Ga0210140_11158561

F037736

VPYRVQLDGLQILWLLANPLRTHGIGESGSKTITGWLLMGAAGTNQIWWLDTNPFTGLLLHPKSYRIMHLPFVHSNVFFFYPLLLHLLKKI

Ga0210140_1120815

Ga0210140_11208151

F080661

MNSFERIWTALNLEEPDRIPTHTINIDGNVADKILGKPEKTAFDIFDEMEKNYPDEWVEKINQILDDIEITVFTKAVRAGYELGFDGVGIQYIPFILESQTEMTDIFGKRHKVRNIDGNPYPDYYGGYIKNRKDWEAYPKPD

Ga0210140_1127560

Ga0210140_11275601

F083665

MFLNYNSENLQKEEFQEHLRWFEAEFDEIFQNSSVEPTEYERNVANSLLNKLSESINQCQDEKLLYDLVSTLNSIEKKHPALF

Ga0210140_1135337

Ga0210140_11353372

F022216

GRQVSDRPASSGPTDEQRRRIRRTTLVLALVALGIYVAFIASGVMQARQ

Ga0210140_1135933

Ga0210140_11359331

F012874

MPAKAGIQNYLKKLYSRLRGNDAKGRFKTFYEGIKN

Ga0210140_1138209

Ga0210140_11382092

F044508

FIDQVIIKTNRSDKTEIKKILKISGHQQRWPWPLPGAILIPPALLVVADFQP

Ga0210140_1144698

Ga0210140_11446981

F096594

MAYVVITGSFPAHVGMEVGKKFLKLEKLPDYIKTEHVFNTAAGDYAFFTIYKIEDDSKYFDALKAITKRFSGYMDIVGYKYTLHP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300025566: Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - China_Bullhead_CordB_D2 (SPAdes)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences