3300025529: Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, USA - AR20-4-D (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300025529
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0110114 | Gp0061316 | Ga0207865
• Sample Name: Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, USA - AR20-4-D (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 161245640
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	6

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Ionic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa
• Type: Engineered
• Taxonomy: Engineered → Lab Enrichment → Defined Media → Unclassified → Unclassified → Ionic Liquid And High Solid Enriched → Ionic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Joint BioEnergy Institute, California, USA
• Coordinates
  • Lat. (^o): 38.5402
  • Long. (^o): -121.75
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002513	Metagenome / Metatranscriptome	552	Y
F009664	Metagenome / Metatranscriptome	314	Y
F020484	Metagenome / Metatranscriptome	223	Y
F035610	Metagenome / Metatranscriptome	171	Y
F037034	Metagenome / Metatranscriptome	168	Y
F068340	Metagenome / Metatranscriptome	124	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0207865_113830	Not Available	1591
Ga0207865_122031	Not Available	931
Ga0207865_125031	Not Available	813
Ga0207865_126837	Not Available	757
Ga0207865_130766	Not Available	658
Ga0207865_130878	Not Available	656

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0207865_113830	Ga0207865_1138302	F020484	MARTLDVARSEIRDRLQRWDKMDTTLLFGINFGRIRTRWKEKFVHFAMEQCFSTGSVLEIERKIREDEAAMGQRGIEGGDDDVKQ
Ga0207865_122031	Ga0207865_1220311	F037034	MVPNAPKWYETHQNMSLGSNGVDRVLSLRKIPMRLRGTNFCIT
Ga0207865_125031	Ga0207865_1250311	F002513	MVLKVLWIKILFIKLTNSSKHSLMLAKIGIEVHLMHQF
Ga0207865_126837	Ga0207865_1268371	F035610	MHEGTIYLTTLIELFVHIDCEKHSLRVLTSRETTKDKLANMLVSKSQTIE
Ga0207865_130766	Ga0207865_1307662	F009664	KIFQVVYLESYYSETFNQMHADTSFRNGSGASTEWRETFKNMSFGPKVVDWACSLEQNNKRF
Ga0207865_130878	Ga0207865_1308781	F068340	MGWIRCVGCEKLKRDFVAQTFALIGPVQYVLQQVSCSYGTIPNARKYHKTDRNISLGSNGVDWVHSLRKISTXLCGTSFCINWSSSSHFAPSFMQLRNDPKCTQTLXNTPKHEFRVQWGGSGAFVVKNTMXLRGTNFCINXTSSVCFETSFLQLRNDPKCTQILQNAPKH