NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F105334

Metagenome / Metatranscriptome Family F105334

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F105334
Family Type Metagenome / Metatranscriptome
Number of Sequences 100
Average Sequence Length 44 residues
Representative Sequence MTKVAFRTGIPFFDRDEFLTPFDKMFDSMVESQFPEVVKSVGVKP
Number of Associated Samples 85
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 97.98 %
% of genes near scaffold ends (potentially truncated) 98.00 %
% of genes from short scaffolds (< 2000 bps) 85.00 %
Associated GOLD sequencing projects 84
AlphaFold2 3D model prediction Yes
3D model pTM-score0.30

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (71.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine
(50.000 % of family members)
Environment Ontology (ENVO) Unclassified
(89.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(84.000 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 35.62%    β-sheet: 0.00%    Coil/Unstructured: 64.38%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.30
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF09374PG_binding_3 5.00
PF00565SNase 5.00
PF02384N6_Mtase 4.00
PF01555N6_N4_Mtase 3.00
PF02945Endonuclease_7 3.00
PF13589HATPase_c_3 1.00
PF11655DUF2589 1.00
PF03544TonB_C 1.00
PF00478IMPDH 1.00
PF07728AAA_5 1.00
PF02086MethyltransfD12 1.00
PF00085Thioredoxin 1.00
PF02412TSP_3 1.00
PF01458SUFBD 1.00
PF01844HNH 1.00
PF02963EcoRI 1.00

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 100 Family Scaffolds
COG0863DNA modification methylaseReplication, recombination and repair [L] 3.00
COG1041tRNA G10 N-methylase Trm11Translation, ribosomal structure and biogenesis [J] 3.00
COG2189Adenine specific DNA methylase ModReplication, recombination and repair [L] 3.00
COG0338DNA-adenine methylaseReplication, recombination and repair [L] 1.00
COG0719Fe-S cluster assembly scaffold protein SufBPosttranslational modification, protein turnover, chaperones [O] 1.00
COG0810Periplasmic protein TonB, links inner and outer membranesCell wall/membrane/envelope biogenesis [M] 1.00
COG3392Adenine-specific DNA methylaseReplication, recombination and repair [L] 1.00


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A71.00 %
All OrganismsrootAll Organisms29.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000148|SI47jul10_100mDRAFT_c1053094Not Available521Open in IMG/M
3300000157|LPaug08P261000mDRAFT_c1026745Not Available797Open in IMG/M
3300000195|SI39nov08_150mDRAFT_c1021703Not Available687Open in IMG/M
3300001589|JGI24005J15628_10081635All Organisms → Viruses → Predicted Viral1135Open in IMG/M
3300001589|JGI24005J15628_10197325Not Available568Open in IMG/M
3300002484|JGI25129J35166_1047752Not Available837Open in IMG/M
3300003587|JGI26256J51712_1060113Not Available590Open in IMG/M
3300004958|Ga0066614_100784Not Available512Open in IMG/M
3300005428|Ga0066863_10077153Not Available1227Open in IMG/M
3300005430|Ga0066849_10101809All Organisms → cellular organisms → Bacteria1141Open in IMG/M
3300005430|Ga0066849_10334537Not Available575Open in IMG/M
3300005431|Ga0066854_10068520All Organisms → Viruses → Predicted Viral1176Open in IMG/M
3300005514|Ga0066866_10126481All Organisms → cellular organisms → Bacteria923Open in IMG/M
3300005514|Ga0066866_10321127All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED88526Open in IMG/M
3300005603|Ga0066853_10203084Not Available660Open in IMG/M
3300005604|Ga0066852_10214711Not Available659Open in IMG/M
3300006011|Ga0066373_10190722Not Available597Open in IMG/M
3300006082|Ga0081761_1096898Not Available742Open in IMG/M
3300006324|Ga0068476_1433181Not Available813Open in IMG/M
3300006325|Ga0068501_1130562Not Available744Open in IMG/M
3300006338|Ga0068482_1235046Not Available683Open in IMG/M
3300006340|Ga0068503_10248604All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium2021Open in IMG/M
3300006738|Ga0098035_1144025Not Available812Open in IMG/M
3300006751|Ga0098040_1115901Not Available802Open in IMG/M
3300006754|Ga0098044_1100189All Organisms → Viruses → Predicted Viral1187Open in IMG/M
3300006900|Ga0066376_10044982All Organisms → Viruses → Predicted Viral2862Open in IMG/M
3300006900|Ga0066376_10803699Not Available508Open in IMG/M
3300006902|Ga0066372_10477748Not Available730Open in IMG/M
3300006902|Ga0066372_10952411Not Available523Open in IMG/M
3300007510|Ga0105013_1573472Not Available517Open in IMG/M
3300007770|Ga0105015_1086227Not Available1219Open in IMG/M
3300008219|Ga0114905_1085290All Organisms → Viruses → Predicted Viral1111Open in IMG/M
3300008219|Ga0114905_1264832Not Available537Open in IMG/M
3300008954|Ga0115650_1104698All Organisms → Viruses → Predicted Viral2053Open in IMG/M
3300008999|Ga0102816_1302035Not Available510Open in IMG/M
3300009104|Ga0117902_1071900All Organisms → Viruses → Predicted Viral3970Open in IMG/M
3300009109|Ga0117922_1232999Not Available723Open in IMG/M
3300009193|Ga0115551_1463794All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon541Open in IMG/M
3300009433|Ga0115545_1014697Not Available3328Open in IMG/M
3300009703|Ga0114933_10330709Not Available1007Open in IMG/M
3300009790|Ga0115012_11763055Not Available541Open in IMG/M
3300010150|Ga0098056_1227568Not Available620Open in IMG/M
3300010151|Ga0098061_1031942All Organisms → Viruses → Predicted Viral2111Open in IMG/M
3300010151|Ga0098061_1084729All Organisms → Viruses → Predicted Viral1192Open in IMG/M
3300010153|Ga0098059_1010263Not Available3934Open in IMG/M
3300012928|Ga0163110_11524306All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium543Open in IMG/M
3300017703|Ga0181367_1016434All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium1353Open in IMG/M
3300017727|Ga0181401_1056688All Organisms → Viruses → Predicted Viral1060Open in IMG/M
3300020272|Ga0211566_1104191Not Available590Open in IMG/M
3300020344|Ga0211570_1049726Not Available1035Open in IMG/M
3300020378|Ga0211527_10082321Not Available958Open in IMG/M
3300020378|Ga0211527_10204683All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon550Open in IMG/M
3300020449|Ga0211642_10531843Not Available503Open in IMG/M
3300020470|Ga0211543_10611359Not Available510Open in IMG/M
3300020471|Ga0211614_10130580All Organisms → Viruses → Predicted Viral1074Open in IMG/M
3300020471|Ga0211614_10241744All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium786Open in IMG/M
3300021371|Ga0213863_10277854All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon708Open in IMG/M
3300022227|Ga0187827_10101461All Organisms → Viruses → Predicted Viral2129Open in IMG/M
3300022227|Ga0187827_10521669Not Available708Open in IMG/M
(restricted) 3300022931|Ga0233433_10433661Not Available510Open in IMG/M
(restricted) 3300024257|Ga0233442_1005216Not Available6907Open in IMG/M
3300025078|Ga0208668_1020829Not Available1330Open in IMG/M
3300025078|Ga0208668_1066367Not Available652Open in IMG/M
3300025082|Ga0208156_1066098Not Available696Open in IMG/M
3300025097|Ga0208010_1070337Not Available750Open in IMG/M
3300025109|Ga0208553_1078244Not Available787Open in IMG/M
3300025125|Ga0209644_1084446Not Available745Open in IMG/M
3300025128|Ga0208919_1124816Not Available814Open in IMG/M
3300025131|Ga0209128_1021802Not Available2769Open in IMG/M
3300025131|Ga0209128_1052582Not Available1482Open in IMG/M
3300025141|Ga0209756_1105992All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1203Open in IMG/M
3300025141|Ga0209756_1127098All Organisms → Viruses → Predicted Viral1057Open in IMG/M
3300025431|Ga0209449_1067908Not Available603Open in IMG/M
3300026193|Ga0208129_1076363Not Available676Open in IMG/M
3300026200|Ga0208894_1011896Not Available3508Open in IMG/M
3300026202|Ga0207984_1059978Not Available970Open in IMG/M
3300026204|Ga0208521_1076702Not Available927Open in IMG/M
3300026209|Ga0207989_1073614Not Available895Open in IMG/M
3300026212|Ga0208409_1064687Not Available885Open in IMG/M
3300026260|Ga0208408_1010939All Organisms → cellular organisms → Bacteria3831Open in IMG/M
3300026267|Ga0208278_1020672Not Available1775Open in IMG/M
3300026267|Ga0208278_1022998Not Available1661Open in IMG/M
3300027699|Ga0209752_1035203All Organisms → Viruses → Predicted Viral1754Open in IMG/M
3300028018|Ga0256381_1069069Not Available522Open in IMG/M
3300028177|Ga0257122_1004763All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Thorarchaeota → Candidatus Thorarchaeota archaeon7402Open in IMG/M
3300028192|Ga0257107_1091390All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED198914Open in IMG/M
3300028284|Ga0257120_1092769Not Available665Open in IMG/M
3300028489|Ga0257112_10194945Not Available708Open in IMG/M
3300030728|Ga0308136_1072716Not Available788Open in IMG/M
3300031627|Ga0302118_10152998Not Available1125Open in IMG/M
3300031757|Ga0315328_10161808All Organisms → Viruses → Predicted Viral1306Open in IMG/M
3300031766|Ga0315322_10882753Not Available545Open in IMG/M
3300031801|Ga0310121_10131372Not Available1576Open in IMG/M
3300031802|Ga0310123_10246242Not Available1191Open in IMG/M
3300031861|Ga0315319_10512993Not Available598Open in IMG/M
3300032130|Ga0315333_10374562Not Available673Open in IMG/M
3300032130|Ga0315333_10614478Not Available506Open in IMG/M
3300032138|Ga0315338_1005185Not Available9584Open in IMG/M
3300032278|Ga0310345_12355649Not Available514Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine50.00%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine8.00%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater6.00%
MarineEnvironmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine5.00%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine5.00%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine4.00%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine4.00%
SeawaterEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Seawater3.00%
Deep OceanEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean2.00%
MarineEnvironmental → Aquatic → Marine → Inlet → Unclassified → Marine2.00%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater2.00%
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine2.00%
Surface SeawaterEnvironmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater1.00%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater1.00%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine1.00%
SeawaterEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Seawater1.00%
Diffuse Hydrothermal Flow Volcanic VentEnvironmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Hydrothermal Flow Volcanic Vent1.00%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater1.00%
Deep SubsurfaceEnvironmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface1.00%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000148Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 47 07/07/10 100mEnvironmentalOpen in IMG/M
3300000157Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2008 P26 1000mEnvironmentalOpen in IMG/M
3300000195Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 39 11/10/09 150mEnvironmentalOpen in IMG/M
3300001589Marine viral communities from the Pacific Ocean - LP-40EnvironmentalOpen in IMG/M
3300002484Marine viral communities from the Pacific Ocean - ETNP_2_130EnvironmentalOpen in IMG/M
3300003587Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI073_LV_150m_DNAEnvironmentalOpen in IMG/M
3300004958Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI047_120m_RNA (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300005428Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F10-02SV253EnvironmentalOpen in IMG/M
3300005430Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV69EnvironmentalOpen in IMG/M
3300005431Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV75EnvironmentalOpen in IMG/M
3300005514Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV263EnvironmentalOpen in IMG/M
3300005603Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV61EnvironmentalOpen in IMG/M
3300005604Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV63EnvironmentalOpen in IMG/M
3300006011Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_O2min_ad_340m_LVEnvironmentalOpen in IMG/M
3300006082Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS907_Anemone_DNAEnvironmentalOpen in IMG/M
3300006324Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT231_1_0500mEnvironmentalOpen in IMG/M
3300006325Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_1_0500mEnvironmentalOpen in IMG/M
3300006338Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT232_1_0770mEnvironmentalOpen in IMG/M
3300006340Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0770mEnvironmentalOpen in IMG/M
3300006738Marine viral communities from the Subarctic Pacific Ocean - 3_ETSP_OMZ_AT15126 metaGEnvironmentalOpen in IMG/M
3300006751Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaGEnvironmentalOpen in IMG/M
3300006753Marine viral communities from the Subarctic Pacific Ocean - 6_ETSP_OMZ_AT15160 metaGEnvironmentalOpen in IMG/M
3300006754Marine viral communities from the Subarctic Pacific Ocean - 10_ETSP_OMZ_AT15264 metaGEnvironmentalOpen in IMG/M
3300006900Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_Bottom_ad_5009_LV_AEnvironmentalOpen in IMG/M
3300006902Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_250_ad_251m_LV_AEnvironmentalOpen in IMG/M
3300007510Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 267m, 250-2.7um, replicate aEnvironmentalOpen in IMG/M
3300007770Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 247m, 250-2.7um, replicate aEnvironmentalOpen in IMG/M
3300008219Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_b05EnvironmentalOpen in IMG/M
3300008954Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 247m, 250-2.7umEnvironmentalOpen in IMG/M
3300008999Estuarine microbial communities from the Columbia River estuary - Flood tide non-ETM metaG S.545EnvironmentalOpen in IMG/M
3300009104Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 143m, 2.7-0.2umEnvironmentalOpen in IMG/M
3300009109Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, May cruise - 234m, 2.7-0.2um, replicate bEnvironmentalOpen in IMG/M
3300009193Pelagic marine microbial communities from North Sea - COGITO_mtgs_110321EnvironmentalOpen in IMG/M
3300009433Pelagic marine microbial communities from North Sea - COGITO_mtgs_100330EnvironmentalOpen in IMG/M
3300009703Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 4SBTROV12_W25 metaGEnvironmentalOpen in IMG/M
3300009790Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT10 MetagenomeEnvironmentalOpen in IMG/M
3300010150Marine viral communities from the Subarctic Pacific Ocean - 17B_ETSP_OMZ_AT15314_CsCl metaGEnvironmentalOpen in IMG/M
3300010151Marine viral communities from the Subarctic Pacific Ocean - 22_ETSP_OMZ_AT15343 metaGEnvironmentalOpen in IMG/M
3300010153Marine viral communities from the Subarctic Pacific Ocean - 20_ETSP_OMZ_AT15318 metaGEnvironmentalOpen in IMG/M
3300012928Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St17 metaGEnvironmentalOpen in IMG/M
3300017703Marine viral communities from the Subarctic Pacific Ocean - ?Lowphox_02 viral metaGEnvironmentalOpen in IMG/M
3300017727Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 24 SPOT_SRF_2011-07-20EnvironmentalOpen in IMG/M
3300020272Marine microbial communities from Tara Oceans - TARA_B100001971 (ERX556120-ERR599127)EnvironmentalOpen in IMG/M
3300020344Marine microbial communities from Tara Oceans - TARA_B100001964 (ERX556104-ERR598987)EnvironmentalOpen in IMG/M
3300020378Marine microbial communities from Tara Oceans - TARA_B100000066 (ERX556006-ERR599102)EnvironmentalOpen in IMG/M
3300020449Marine microbial communities from Tara Oceans - TARA_B100001079 (ERX556008-ERR599020)EnvironmentalOpen in IMG/M
3300020470Marine microbial communities from Tara Oceans - TARA_B100000287 (ERX555976-ERR599053)EnvironmentalOpen in IMG/M
3300020471Marine microbial communities from Tara Oceans - TARA_B100000214 (ERX556063-ERR599002)EnvironmentalOpen in IMG/M
3300021371Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO497EnvironmentalOpen in IMG/M
3300022227Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014_SV_150_PacBio MetaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300022931 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_100_MGEnvironmentalOpen in IMG/M
3300024257 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_150_MGEnvironmentalOpen in IMG/M
3300025078Marine viral communities from the Subarctic Pacific Ocean - 18_ETSP_OMZAT15316 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025082Marine viral communities from the Subarctic Pacific Ocean - 1_ETSP_OMZ_AT15124 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025097Marine viral communities from the Subarctic Pacific Ocean - 2_ETSP_OMZ_AT15125 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025109Marine viral communities from the Subarctic Pacific Ocean - 6_ETSP_OMZ_AT15160 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025125Marine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes)EnvironmentalOpen in IMG/M
3300025128Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025131Marine viral communities from the Pacific Ocean - ETNP_6_100 (SPAdes)EnvironmentalOpen in IMG/M
3300025141Marine viral communities from the Pacific Ocean - ETNP_6_85 (SPAdes)EnvironmentalOpen in IMG/M
3300025431Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI074_LV_100m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300026193Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306PF47B (SPAdes)EnvironmentalOpen in IMG/M
3300026200Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306SV49 (SPAdes)EnvironmentalOpen in IMG/M
3300026202Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306PF43B (SPAdes)EnvironmentalOpen in IMG/M
3300026204Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306SV47 (SPAdes)EnvironmentalOpen in IMG/M
3300026209Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV65 (SPAdes)EnvironmentalOpen in IMG/M
3300026212Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV201 (SPAdes)EnvironmentalOpen in IMG/M
3300026260Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV67 (SPAdes)EnvironmentalOpen in IMG/M
3300026267Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV259 (SPAdes)EnvironmentalOpen in IMG/M
3300027699Marine microbial communities from oxygen minimum zone in mesopelagic equatorial Pacific - METZYME_3_250m (SPAdes)EnvironmentalOpen in IMG/M
3300028018Seawater viral communities from deep brine pools at the bottom of the Mediterranean Sea - LS1 1600mEnvironmentalOpen in IMG/M
3300028177Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI106_120EnvironmentalOpen in IMG/M
3300028192Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_500mEnvironmentalOpen in IMG/M
3300028284Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI106_10EnvironmentalOpen in IMG/M
3300028489Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2015_P26_1000mEnvironmentalOpen in IMG/M
3300030728Metatranscriptome of marine microbial communities from Western Arctic Ocean, Canada - CB4_940_32.3 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031627Marine microbial communities from Western Arctic Ocean, Canada - AG5_33.1EnvironmentalOpen in IMG/M
3300031757Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 200m 32315EnvironmentalOpen in IMG/M
3300031766Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 21515EnvironmentalOpen in IMG/M
3300031801Marine microbial communities from Western Arctic Ocean, Canada - CB27_Tmax_986EnvironmentalOpen in IMG/M
3300031802Marine microbial communities from Western Arctic Ocean, Canada - CB6_AW_1057EnvironmentalOpen in IMG/M
3300031861Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 3416EnvironmentalOpen in IMG/M
3300032130Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 200m 34915EnvironmentalOpen in IMG/M
3300032138Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - ASW #8EnvironmentalOpen in IMG/M
3300032278Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-500_MGEnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
SI47jul10_100mDRAFT_105309423300000148MarineMTKVAFRTGIPFFDRDTFLTPFDKMFDSIVESQYPDITKSVGVKPFAGS
LPaug08P261000mDRAFT_102674513300000157MarineMTKVAFRTGIPFFDRDTFLTPFDKMFDSMVESQFPDIVK
SI39nov08_150mDRAFT_102170313300000195MarineMTKVAFHRAGIPFFDRDTFLTPFDKIFDQMIGSQFPDITKSVGVNPY
JGI24005J15628_1008163513300001589MarineMTKVAFRTNIPFFNRDEFLTPFDKMFDQLVETQFPDMVKQVGVK
JGI24005J15628_1019732513300001589MarineMTKVAFRTNIPFFNRDEFLTPFDKMFDQLVETQFPDMVKQVG
JGI25129J35166_104775223300002484MarineMTKVAFRTGIPFFDRDEFLTPFDKMFDSMVESQFPEVVKSVG
JGI26256J51712_106011313300003587MarineMTKVAFHRAGIPFFDRDTFLTPFDKIFDQMIGSQFPDITKSVGV
Ga0066614_10078423300004958MarineMTKVAFHRAGIPFFDRDTFLTPFDKIFDQMIGSQFPDITKSVGVNPYA
Ga0066863_1007715323300005428MarineMTKVAFHTGIPFFDRDEFLTPFDKMFDSMVESQFPEVVKSV
Ga0066849_1010180913300005430MarineMTKVLLNRNLPFFDRDDFLTPFDKMFDNLVETQFPDIVKQVGVKPYQ
Ga0066849_1033453713300005430MarineMTKVLFNRNNLPFFDRDDFLTPFDKMFDNLVETQFPDIVKQVGVKPYQ
Ga0066854_1006852013300005431MarineMTKVAFRTGIPFFDRDNFLTPFDKMFDQMVEAQFPEMTKS
Ga0066866_1012648113300005514MarineMTKVLLNRNLPFFDRDDFLTPFDKMFDNLVETQFPDIVKQVGVKP
Ga0066866_1032112723300005514MarineMTKVLFNRNNLPFFDRDDFLTPFDKMFDNLVETQFPDIVKQVGVKPY
Ga0066853_1020308423300005603MarineMTKVAFRTNIPYFDRDTFLTPFDKMFDQMVESQFPDVVKS
Ga0066852_1021471113300005604MarineMTKVAFHTNFPIIDRDDFLTPFDKMFDQIVATQFPDITKSVGVKP
Ga0066373_1019072213300006011MarineMTKVAFRTNIPYFDRDTFLTPFDKMFDQMVESQFPDVVKSVGVKPY
Ga0081761_109689813300006082Diffuse Hydrothermal Flow Volcanic VentMTKVAFRTNIPYFDRDTFLTPFDKMFDQMVESQFPDITKSVGVRPYA
Ga0068476_143318123300006324MarineMTKVAFRTNIPFFNRDEFLTPFDKMFDAMVESQFPDIVK
Ga0068501_113056213300006325MarineMTKVAFRTNIPFFNRDEFLTPFDKMFDAMVESLFPDI
Ga0068482_123504613300006338MarineMTKVALRTNIPFFDRDDFLTPFDKMFDTLVETQFPDVVKQ
Ga0068503_1024860413300006340MarineMTKVAFHTGIPFFDRDTFLTPFDKMFDQMVESQFPDVVKSVKVHF
Ga0098035_114402533300006738MarineMTKVAFHTGIPFFDRDEFLTPFDKMFDSMVESQFPEVVKSVGVKPYQGSA
Ga0098040_111590113300006751MarineMTKVAFRTGIPFFDRDEFLTPFDKMFDSMVESQFPEVVKSVGVKPYQ
Ga0098039_128179713300006753MarineMTKLMFHTGNFPFPDRDEFLTPFDKMFDHMLDTQFPEVAKQVGVKP
Ga0098044_110018943300006754MarineMNKLMFHTGNIPLPDRDTFLTPFDKIFDQMLDTQFPEVVKQVGVKPYQGS
Ga0066376_1004498213300006900MarineMTKVAFRTGIPFFDRDTFLTPFDKMFDSMVESQFPD
Ga0066376_1080369923300006900MarineMTKVAFRTNIPYFDRDTFLTPFDKMFDQMVESQFPDITKSVGV
Ga0066372_1047774813300006902MarineMTKVAFRTGIPFFDRDEFLTPFDKMFDSMVESQFPE
Ga0066372_1095241123300006902MarineMTKVAFRTGIPFFDRDTFLTPFDKMFDSMVESQFPEVVKSVGVKPY
Ga0105013_157347213300007510MarineMTKVAFRTNIPYIDRDDFLTPFDKMFDQMVESQFPEMTKSVGVKPYS
Ga0105015_108622713300007770MarineMTKVAFRTGIPFFDRDEFLVPFDRAFDSMIESQFPDIVKTVGVKPFEGTAYPKI
Ga0114905_108529013300008219Deep OceanMFHTGNFPFPDRDEFLTPFDKIFDHMMDTQFPEVVKQVGVKPYQGSA
Ga0114905_126483213300008219Deep OceanMTKVAFHTNIPFFDRDSFLTPFDKMFDQMVEAQFPDVVKQVGVKPYQGSA
Ga0115650_110469863300008954MarineMTKVAFRTGIPFFDRDDFLTPFDKMFDAMVETQFPDVV
Ga0102816_130203523300008999EstuarineMTKVLFKHNLPFFDRDDFLTPFDKMFDNLVETQFPDIVKQVGVKPYQGSA
Ga0117902_1071900113300009104MarineMTKVAFHTNFPIIDRDDFLTPFDKMFDQIVSTQFPEITKS
Ga0117922_123299923300009109MarineMTKVAFRTGIPHFDRDTFLTPFDRVFDQMVESQFPEIVKTVGVKPYGNSA
Ga0115551_146379413300009193Pelagic MarineMTKVIVRNPFPVIDRDSFLTPFDKMFDQIVESSFPDVTKSVGVKPFQGTAY
Ga0115545_101469793300009433Pelagic MarineMTKVIVRNPFPVIDRDSFLTPFDKMFDQIVESSFPDVTKSVGVKPFQGT
Ga0114933_1033070913300009703Deep SubsurfaceMTKVAFHTGFPIIDRDDFLTPFDKMFDQIVQTQFPDITKSVG
Ga0115012_1176305513300009790MarineMTKVVFNRNIPMIDRDSFLTPFDKIFDQMVESQFPEVVKSVGVKQYAGSA
Ga0098056_122756813300010150MarineMFHTHNIPLPDRDTFLTPFDKIFDQMLDTQFPEVVKQVGVKPYQGSA
Ga0098061_103194213300010151MarineMTKVVFNAPRFPVIDREDFLTPFDKMFDQIVATNFPDITKSVGVNPYAG
Ga0098061_108472953300010151MarineMTKVAFQTRFPIIDREQFLTPFDKMFDQIVESSFPAVT*
Ga0098059_101026313300010153MarineMTKVAFHTGIPFFDRDEFLTPFDKMFDNIVETQFPD
Ga0163110_1152430613300012928Surface SeawaterMTKVTFHRGPVLDRDQFLTPFDKIFDAMFEEQFPEV
Ga0181367_101643413300017703MarineMTKVAFRTNIPYFDRDTFLTPFDKMFDQMVESQFPDVVKSVGVKPYAGS
Ga0181401_105668823300017727SeawaterMTKVAFRTNIPFFNRDEFLTPFDKMFDQLVETQFPDMVK
Ga0211566_110419113300020272MarineMTKVAFRTGIPFFDRDDFLTPFDKMFDAMVETQFPEVVKSVGVKPYA
Ga0211570_104972613300020344MarineMTKVAFRTGIPYFDRDDFLTPFDKMFDQMVESQFPDVV
Ga0211527_1008232113300020378MarineMTKVVVNPNLPFFDRDSFLTPFDKMFDQMIEQQFPNVVQQVGV
Ga0211527_1020468323300020378MarineMTKVIVRNPFPVLDRDSFLTPFDKMFDQIVESSFPDVTKSVGVKPFQG
Ga0211642_1053184313300020449MarineMTKVAFHTNIPFFDRDSFLTPFDKMFDQMVEAQFP
Ga0211543_1061135923300020470MarineMTKVAFHTGVPFFDRDDFLTPFDKMFDQIVATHYPDITKSVGVNPMQGTAYP
Ga0211614_1013058013300020471MarineMTKLMLHTANFPLLDRDEFLTPFDKMFDNLVESQFPEVVKQVGVKPYQGSA
Ga0211614_1024174413300020471MarineMTKVTLHRNPFFDRDQFLTPFDKMFDAMFEEQFPE
Ga0213863_1027785413300021371SeawaterMTKVLFKHNLPFFDRDDFLTPFDKMFDNLVETQFP
Ga0187827_1010146113300022227SeawaterMTKVAFRTGIPFFDRDEFLTPFDKMFDSMVESQFPEVVKSVGVKPYQGSAY
Ga0187827_1052166923300022227SeawaterMTKVAFHTGIPFFDRDEFLTPFDKMFDSMVESQFPEVVKSVGVKPYQGS
(restricted) Ga0233433_1043366123300022931SeawaterMTKVAFRTNIPFFNRDEFLTPFDKMFDQLVETQFPDMVKQVGVKPYQGS
(restricted) Ga0233442_100521683300024257SeawaterMTKVAFRTGIPFFDRDTFLTPFDKMFDSIVESQYPDI
Ga0208668_102082913300025078MarineMTKVAFRTGIPFFDRDDFLTPFDKMFDAMVETQFPEVV
Ga0208668_106636713300025078MarineMTKVAFRTNIPYFDRDTFLTPFDKMFDQMVESQFPDVVKSVGVKPYA
Ga0208156_106609813300025082MarineMTKVAFRTGIPFFDRDDFLTPFDKMFDAMVETQFPNV
Ga0208010_107033713300025097MarineMTHEHVTLHTSIPFFDRDEFLTPFDRVFDQMVEKQFPEMVKAIGVKPYQGSAY
Ga0208553_107824413300025109MarineMTKVAFRTGIPFFDRDTFLTPFDKMFDSMVESQFP
Ga0209644_108444613300025125MarineMTKVAFHRAGIPFFDRDTFLTPFDKMFDQMVETQFPDITKSVGVRPYAGS
Ga0208919_112481613300025128MarineMTKVAFHTNFPIIDRDDFLTPFDKMFDQIVQTQFPDITKSVGVKPYQGSA
Ga0209128_102180213300025131MarineMTKVAFRTGIPFFDRDTFLTPFDKMFDSMVESQFPEVVKSVGVKPYQGSA
Ga0209128_105258233300025131MarineMTKVAFRTGIPFFDRDTFLTPFDKMFDSMVESQFPEVVKSVGVKPYQGSAYP
Ga0209756_110599213300025141MarineMTKVLLNRNLPFFDRDDFLTPFDKMFDNLVETQFPDIVKQ
Ga0209756_112709833300025141MarineMTKVLFNRNNLPFFDRDDFLTPFDKMFDNLVETQFPDIVKQ
Ga0209449_106790813300025431MarineMTKVAFHRAGIPFFDRDTFLTPFDKIFDQMIGSQFP
Ga0208129_107636313300026193MarineMTKVAFHTGIPFFDRDEFLTPFDKMFDSMVESQFPEVVKSVG
Ga0208894_101189613300026200MarineMTKVAFRTGIPYFDRDDFLTPFDKMFDQMVESQFPDVVKSVGVKPYAGSAYP
Ga0207984_105997813300026202MarineMTKVAFRTNIPFFDRDTFLTPFDKMFDQMVESQFPDVVKSV
Ga0208521_107670213300026204MarineMTKVAFRTGIPFFDRDDFLTPFDKMFDAMVETQFPEVVKSVGVKPYAGSAYP
Ga0207989_107361423300026209MarineMTKVAFRTNIPYFDRDDFLTPFDKMFDTMVETQFPEMTKSVGVKPYQGSA
Ga0208409_106468713300026212MarineMTKVAFRTGIPFFDRDTFLTPFDKMFDSMVESQFPEVVKSVGVKPYQG
Ga0208408_101093913300026260MarineMTKVLLNRNLPFFDRDDFLTPFDKMFDNLVETQFPDI
Ga0208278_102067213300026267MarineMTKVAFRTNIPFFDRDTFLTPFDKMFDQMVETQFPDITKSVGVKPYA
Ga0208278_102299833300026267MarineMTKVAFRTNIPYFDRDTFLTPFDKMFDQMVESQFPDVVKSVGVKP
Ga0209752_103520313300027699MarineMTKVAFRTGIPFFDRDTFLTPFDKMFDSMVESQFPEVVKSV
Ga0256381_106906923300028018SeawaterMTKVAFRTGIPYFDRDTFLTPFDKMFDSMVESQFPDIV
Ga0257122_100476393300028177MarineMTKVAFRTGIPFFDRDTFLTPFDKMFDSIVESQYPDITKSVGVKPFAGSAYPKVNVYEYD
Ga0257107_109139033300028192MarineMTKLAIRTPFPFFDRDEFLTPFDKMFDSIVETSYPDVMRS
Ga0257120_109276913300028284MarineMTKVAFRTNIPFFNRDEFLTPFDKMFDQLVETQFPDMVKQVGVKPYQG
Ga0257112_1019494513300028489MarineMTKVAFRTNIPFFNRDEFLTPFDKMFDAMVESQFPDIVKQVGVK
Ga0308136_107271613300030728MarineMTKVAFHTNIPFFNRDDFLTPFDKMFDQMVSTHYP
Ga0302118_1015299813300031627MarineMTKVAFHTNIPFFNRDDFLTPFDKMFDQMVSTHYPDIAKSV
Ga0315328_1016180843300031757SeawaterMTKVVFNHALPMIDRDSFLTPFDKMFDQMIETHFPNVVQQVGVKPYQGTA
Ga0315322_1088275333300031766SeawaterMTKVAFHTNFPLIDREDFLTPFDKMFDQIVEASFPDV
Ga0310121_1013137213300031801MarineMTKVAFRTGIPFFDRDEFLTPFDKMFDSMVESQFPEVVKSVGVKPYQGSA
Ga0310123_1024624233300031802MarineMTKVAFRTNIPFFDRETFLTPFDKIFDQLVEAQYPEVVKSVGLKPYGNAAY
Ga0315319_1051299323300031861SeawaterMTKVVVNRNIPFFDRDNFLTPFDRMFDQIVEAQYPEVTRT
Ga0315333_1037456233300032130SeawaterMTKVAFHTNFPLIDREDFLTPFDKMFDQIVEASFPDVTKSVGI
Ga0315333_1061447813300032130SeawaterMTKVAFRTGIPYFDRDDFLTPFDKMFDQLVETQFPEMTKSVGVKPYA
Ga0315338_1005185183300032138SeawaterMTKVAFRTGIPFFDRDEFLTPFDKMFDSMVESQFPEVVKSVGVKP
Ga0310345_1235564913300032278SeawaterMTKVAFRTGIPFFDRDEFLTPFDKMFDSMVESQFPEVVKSVGVK


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