NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300025359

3300025359: Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_10 (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300025359 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0110138 | Gp0138735 | Ga0208322
Sample NamePeatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_10 (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size77193609
Sequencing Scaffolds43
Novel Protein Genes44
Associated Families44

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Leotiomycetes → Helotiales → Mollisiaceae1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales1
All Organisms → cellular organisms → Bacteria → Proteobacteria6
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans2
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia2
Not Available19
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinoallomurus → Actinoallomurus bryophytorum1
All Organisms → cellular organisms → Bacteria → Acidobacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidicapsa → Acidicapsa acidisoli1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NamePeatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Alternative Ecosystem Assignments
Environment Ontology (ENVO)forest biomepeatlandpeat soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)N/ADepth (m).1 to .2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000362Metagenome / Metatranscriptome1231Y
F000386Metagenome / Metatranscriptome1203Y
F000579Metagenome / Metatranscriptome1011Y
F000664Metagenome / Metatranscriptome950Y
F000887Metagenome / Metatranscriptome848Y
F002270Metagenome / Metatranscriptome576Y
F003775Metagenome / Metatranscriptome469Y
F003810Metagenome / Metatranscriptome467Y
F006565Metagenome / Metatranscriptome370Y
F007127Metagenome / Metatranscriptome357Y
F007381Metagenome / Metatranscriptome352Y
F008311Metagenome / Metatranscriptome335Y
F008642Metagenome / Metatranscriptome330Y
F009688Metagenome / Metatranscriptome314Y
F014753Metagenome / Metatranscriptome260Y
F016105Metagenome / Metatranscriptome249Y
F016845Metagenome / Metatranscriptome244Y
F018969Metagenome / Metatranscriptome232Y
F022696Metagenome / Metatranscriptome213Y
F023164Metagenome / Metatranscriptome211Y
F024355Metagenome / Metatranscriptome206Y
F024826Metagenome / Metatranscriptome204Y
F025203Metagenome / Metatranscriptome202Y
F026917Metagenome196Y
F028258Metagenome / Metatranscriptome192Y
F033047Metagenome / Metatranscriptome178Y
F035000Metagenome / Metatranscriptome173Y
F042121Metagenome158Y
F042766Metagenome / Metatranscriptome157Y
F046320Metagenome / Metatranscriptome151Y
F054631Metagenome / Metatranscriptome139Y
F055158Metagenome / Metatranscriptome139Y
F056180Metagenome / Metatranscriptome138Y
F059488Metagenome / Metatranscriptome134Y
F063293Metagenome / Metatranscriptome129Y
F063636Metagenome / Metatranscriptome129Y
F065004Metagenome128Y
F065203Metagenome / Metatranscriptome128Y
F070424Metagenome / Metatranscriptome123Y
F071035Metagenome / Metatranscriptome122Y
F073790Metagenome / Metatranscriptome120Y
F089738Metagenome / Metatranscriptome108Y
F092429Metagenome / Metatranscriptome107Y
F104839Metagenome / Metatranscriptome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0208322_1001034All Organisms → cellular organisms → Bacteria2887Open in IMG/M
Ga0208322_1001101All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Leotiomycetes → Helotiales → Mollisiaceae2705Open in IMG/M
Ga0208322_1001864All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales1773Open in IMG/M
Ga0208322_1001985All Organisms → cellular organisms → Bacteria → Proteobacteria1713Open in IMG/M
Ga0208322_1002213All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans1616Open in IMG/M
Ga0208322_1002825All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus1429Open in IMG/M
Ga0208322_1002910All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1410Open in IMG/M
Ga0208322_1003938All Organisms → cellular organisms → Bacteria → Proteobacteria1236Open in IMG/M
Ga0208322_1005557All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans1070Open in IMG/M
Ga0208322_1007267Not Available962Open in IMG/M
Ga0208322_1008352Not Available906Open in IMG/M
Ga0208322_1008634Not Available893Open in IMG/M
Ga0208322_1013708All Organisms → cellular organisms → Bacteria → Proteobacteria741Open in IMG/M
Ga0208322_1014749All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinoallomurus → Actinoallomurus bryophytorum719Open in IMG/M
Ga0208322_1015053All Organisms → cellular organisms → Bacteria → Acidobacteria713Open in IMG/M
Ga0208322_1015431Not Available705Open in IMG/M
Ga0208322_1016020Not Available694Open in IMG/M
Ga0208322_1016770Not Available682Open in IMG/M
Ga0208322_1018223Not Available658Open in IMG/M
Ga0208322_1018835Not Available649Open in IMG/M
Ga0208322_1018851Not Available648Open in IMG/M
Ga0208322_1019012All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium646Open in IMG/M
Ga0208322_1019089All Organisms → cellular organisms → Bacteria645Open in IMG/M
Ga0208322_1019581Not Available638Open in IMG/M
Ga0208322_1020488Not Available626Open in IMG/M
Ga0208322_1021143All Organisms → cellular organisms → Bacteria → Proteobacteria618Open in IMG/M
Ga0208322_1022005All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia607Open in IMG/M
Ga0208322_1023074Not Available595Open in IMG/M
Ga0208322_1023804All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae587Open in IMG/M
Ga0208322_1024789All Organisms → cellular organisms → Bacteria → Proteobacteria577Open in IMG/M
Ga0208322_1025021All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria575Open in IMG/M
Ga0208322_1025285Not Available572Open in IMG/M
Ga0208322_1026364Not Available562Open in IMG/M
Ga0208322_1027212All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter555Open in IMG/M
Ga0208322_1028470Not Available545Open in IMG/M
Ga0208322_1028957All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium540Open in IMG/M
Ga0208322_1029244Not Available538Open in IMG/M
Ga0208322_1029318All Organisms → cellular organisms → Bacteria → Proteobacteria537Open in IMG/M
Ga0208322_1029903All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidicapsa → Acidicapsa acidisoli533Open in IMG/M
Ga0208322_1031249All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium522Open in IMG/M
Ga0208322_1031371Not Available521Open in IMG/M
Ga0208322_1031665Not Available519Open in IMG/M
Ga0208322_1034107Not Available502Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0208322_1001034Ga0208322_10010343F042121LLSAFEQSGQSMRDYCRRHQMPVSSFSSLLRRHAGKHSSARALPVAEHHASATTAFIPVEIVEDRRAAVVAVKSSALFVEMPSGIRIAVERDFDGLTLRRLVAALGRE
Ga0208322_1001101Ga0208322_10011013F033047MKFNLQTTKKTFNILLVNFTLAKFAGALVTITMVALFKYIISGNFHIEYCEFXNNVAIGLLGXTINTAVIGXLSEYLGLKGINFNLNQFLYGYDTIGSGQSSPPKNLKPKLFNAMESDDGYDSSQHKDKGKGIDKVNTEGNDVNDNDTKPLDKGKGVDRRVHPLELGPGHCTEPPFVTXSRVFPGVDPASVFFPKTINPGPGFNVPGGEVPIRDDICKHIDYNSHILSQFKKMDLKTAIEQRDNYLKYIQVINQKTSYAQETLSKVPEIPTNNYEHRLKNTILRDLQDLNMQKVRAEAKATLLNSRIEFIQINRKPDE
Ga0208322_1001864Ga0208322_10018642F008311MSFGEIEAVANEVSRWAVLVSLVYVAIQTRQNVRHTRALIQQGTAARTTTILFGLMDPEIISTWIEGNGGTPTPELIKQRQFHYHCGITMIAMEDYFSQHELGLLSDEQFARGSETFRARLQEPGLRAYWLEQRRMLSKAAPSYCSYIDSLCTEDTAPLAS
Ga0208322_1001985Ga0208322_10019852F008642MDSEQSQEAFDTGLKKIRQEIKSRLVPHGIFATVNDVEDGQAGNVPNDSRIEIAAKGKTVGRSFDRKLIEGCYLRVGGEVLVGIIAMIDEVAA
Ga0208322_1002213Ga0208322_10022132F002270MSDVKNPTRYSGVDRRAPRTDAGGLKPGAAAPRDLYKPGGRHGAITNTLYNWHSYKNWAEKVRGSWDEKK
Ga0208322_1002825Ga0208322_10028253F028258MITANGSDNVPVGPGGVLPKLPVIADTKGRLRVSKAQRRDILTALVRSGEGLPQFARRTGLKYSTLANWVKHSRGGKRSGRPPRLRLLEAVVESPPAAASGTLLVLLLPGGVRLEVADEKQAALAAMVVRELSKPC
Ga0208322_1002910Ga0208322_10029101F063293NFCNRNLKTQHKYMKATAQISSNNGHTVLPAAVRRFLGIGKGARIEFESRPNGEVVVRPLATLDALFGSLKGKGEPQADESAKGWNARAERVVKKGLK
Ga0208322_1003938Ga0208322_10039383F000887MKIILKALIPITLLAAMTGCVVAPYGPYHRGYYGYGPRVAVVAPAPVVVIRP
Ga0208322_1005557Ga0208322_10055571F065203MLDTRSNDWLSRLQGNGPRLASLALAALIAVELARIAISLLGGGPVKSPQPVLSDATA
Ga0208322_1007267Ga0208322_10072672F000386MTDTASRYLTLHVPPDEMVKYIQDLMTLPHGEIAASSAMTLAQRQWGGDTPLARAALLRWGALNLAFQDKRLDTWTVTRERDRIQVPAALVAAAGVAPLVIDNERAVFDIPALLDATLEFQPPAGQA
Ga0208322_1008352Ga0208322_10083521F022696TPLARAAQLRWSALNRAFGDSRLSTWTVHPLRDQIHVPAALIAAAGVARLTMAADEVVFDIPTLLDATLELCEPVGNG
Ga0208322_1008634Ga0208322_10086341F003775VSKSVKVTGDSPVNKLDLDIDLDTQMNSLESEWRQVYEDSIVARAEYQSLAASRQASAELLDLARERLDRAEAQKSRIMVKIERLESRMLGSD
Ga0208322_1013708Ga0208322_10137082F024355MNEQNPTSLRKVVLQISQVLGALVGYGCLAAFLLLVGMQSYRWFREGEWTHIGVTEGMRVGLSRCCVNDGDTGRLAGLVHWIDTPTDWLGLHTVLEVLPASLALFALSVLGNSVFIYCRDRMSEGTRTV
Ga0208322_1014749Ga0208322_10147492F000664MADLSTTDSFQMDLPKDLLSEAQRVAKAPADPLHVEGWRNSWLSRISELLVGKD
Ga0208322_1015053Ga0208322_10150531F059488VRQIPIPGEMRKEVEDSLRAFAQTQKLLKQIAGLNLELLKERKRQR
Ga0208322_1015431Ga0208322_10154311F070424MVTKVNRSPGADASGLYRRPRLVLRTKRFEEIPAILANIKTYPTPVRVVGADYSQTRCVGGDGGTTVDTS
Ga0208322_1016020Ga0208322_10160202F018969MAAALEIKAGGAPETPSSDASFEPYGRLLRMLVPTLRGVVVHDGFANLIWSSDEWDLSDELQIVKDTIANALSDGGEFAGIHRTIDADRAVYSF
Ga0208322_1016770Ga0208322_10167702F092429GGKNITIVMRDPDTPAARFVIEKVLGGTFEDAKAVLNEPARKTTVPVVFVQSDDEVLKVVEGNAGAIGVIDVYNITGGVKVVKIDDKQPFDPGYALKGH
Ga0208322_1018223Ga0208322_10182231F016105MNIFNWRPKTITLDDQKSVLMGRRDPVTGQSVLRTESDADTHRRFIAEFVASLKPDGMIEIQLAQRLAQDTWRINRIQAVEENIFALGHSEPYANLKSAHPEIHAAMVQALTFRNDPKLLSHIATYEQKLTKNFHINFNMLLKLQSL
Ga0208322_1018835Ga0208322_10188352F042766VRFSLASEIVELVVLTSDELFLQTLREAVGGERRLWHVGSADKVSDLLVAGEVGIVVLDTQAMQEIPRVFI
Ga0208322_1018851Ga0208322_10188511F000362YIDQGNNRPRQCSMRNDLQPFLNQRVDPNEMVQYVHALMTAPARADAQWAPNTAVARAAQLRWTALNRAFGDSRVSTWTTQQKRDRLHVPAALIAAAGVARLTLAENEVVFDIPTLLDATLELCEAVGHG
Ga0208322_1019012Ga0208322_10190123F056180TANEVNGHIIHVRQHQIRQLIDIVRGGPATTYGPHGKTFAKALRALARA
Ga0208322_1019089Ga0208322_10190892F000579MATGMTTISVIDFRRHRMVLQWHVQSGTWSACDNPPLLVHGVAFIRASQPNICVYGQAGRLRLQIGSDQYLLTENTPRISCVRGLASLGFRRRFTVAAGGGEVLYSHTYWTSQHHDFLRWLATQAEDPDWRIVSARQWSEGLPAAALRPLYGRAAERGTRPSSSEVVR
Ga0208322_1019581Ga0208322_10195811F003810MHIPEAVHYWGLFLAGHGLHVLKRASLSAQSSLSGTKTRVEWIKTNAMNLTIRFFVNAAAFSYWLAHPDAATHVLSTLGLSANLTLEPGHATAAMFGLSGNSLVDWAAAKVPALQKEIPITE
Ga0208322_1020488Ga0208322_10204881F025203NEKRLNYENVNKKTKEVTRDKCIPLKIKDDNVPPKFIVPIENATLKNHNSYKNGLENIKLYEL
Ga0208322_1021143Ga0208322_10211431F104839MAQPITFSAADVSIWVGRLWWPSLRIGGFIMAAPV
Ga0208322_1022005Ga0208322_10220051F007127MNKTEIAEILRQQVGELEASINQLQARCEKLKTFVLDLEEEIAGPAATNQKPVEDSKFRKVIDQVFGEKPKRPRR
Ga0208322_1023074Ga0208322_10230741F089738MEESLIHSGLQTRSLMSQARYHDRMKICVHLRDLDVYRNLERPLQFSEDIWNAFYQSEVQLKAARQLKEITEQLAKAKKAREFGRSDRDLKALELKLVECQSVVDEVGDPPLKFLKATERVKLVPPTTHRPRQGGIPGLKAAFVSTLPLLHFFHAKIRMLVRFCRVTSLFAIPLRCDTFAIPL
Ga0208322_1023804Ga0208322_10238041F016845MATALVGSNTDGLDNGKDTLYMLGGVALIVFGTGLILSNPFVRRYLSQLGVGNLAQAVMPDIQRYFKLRAM
Ga0208322_1024789Ga0208322_10247891F035000KELQMAVEKLIDEYGPGRRMDELLRKAEELGLNYDEKAELSLLLQAKGRPRVPN
Ga0208322_1025021Ga0208322_10250211F007381KTNLGLRLAWLENWITRRVHTSLAGGASTQSAERVRLPAALLKPKIRALFELLDAARDLRRLSSTSMNQQLALEALLLGGRTALAK
Ga0208322_1025285Ga0208322_10252851F071035MVRIALLLLVCGVSAVARAAPPIDIETAATLYQDAAIREQVRASLGSMPAHIRQLFSADTAAQLSDQQLNAVTAAAKRGFRIDVFEAP
Ga0208322_1025285Ga0208322_10252852F023164MGWRRVLTLALSVSFMAGCAAPDPPPPKKTVFDPLTQQLGRARDVQNTVDANTDSTRKAVDSQERGDNTP
Ga0208322_1026364Ga0208322_10263641F024826MADATPYFGIAPFVLGMSRDVVRGAAGKPDSVETSSDDDGNAVETWFYQGGEIELEFEAVPDAKLESITAWSADITVNGVALIGCDLPELKRLARDADIHDLELTDDFADSGQCWQSEQHGLMLWVAKGKVVNLTIFPRFDDSGEEPQWPE
Ga0208322_1027212Ga0208322_10272121F014753MNIQSEVEFFSDLGLVDKARFLARLIMEIAEEVKADDGDPAAHLRMVNEMNQRLARFAYQLLGEDPARPQDDVVIRMLLG
Ga0208322_1028470Ga0208322_10284701F063636MARSLKTSYLLLALGVSAVLALLLGGLAYYEHRVTTSDANQLTYATVEEKLETDLQSRARSLSNITSTSLITALKEGNNPAVAAVAARLLDERDIERVEVRDAHGGVLFTGSNTAAEPPGRKPFVLQSSIRARNALNSPAGGTLQIWLNRGQ
Ga0208322_1028957Ga0208322_10289572F006565VSCGQVHSSAREFVAQGKPAKLVAETLEISRSSLYYRAKPRASRADRSQDEQIVLACGEK
Ga0208322_1029244Ga0208322_10292441F026917MNPAESQIRGKVRMVAHDARSFGTLSTGERIAVAMVLDRYDLLQDAWGSMLEAVHRLGPEWTEAALRVQRHGWLNE
Ga0208322_1029318Ga0208322_10293182F055158LAELAMAEPLVADAAAAVPELQMAVAKLIEEYGPGRRTDELLRKAEEMGLNSDEKAELSRLLTSKGRLRAPPGST
Ga0208322_1029903Ga0208322_10299032F046320VTFDWSLPEYPGLNSWPGSSGLAIEFSGSEPEDCTIAEQALALTPGGYTMTYAYRTTDIPPATGIRWQIIDSSSNNILVDSPDLSSDELKHSTLAFAVPSGSSLLRLRLGYRRAPGTPRISGTLVVLSTQIEAHVKL
Ga0208322_1031249Ga0208322_10312491F065004NGSFSDWTGIPWAYQGAVDGNPVNYLQVQFANDTNYLYAHVKLASPYALFSDYYSHLFFDTDLNAQTGYPVTGALFGSEMMIESGSGYDQRNGSFNAGSVSGLGWAIAPTVSTNEFEFQVSLSALYPNGTKVFGTNALRLLLQDDRGPEIAVETGIEYIISPPPLGPLFITQSN
Ga0208322_1031371Ga0208322_10313711F054631MRAQIESYAGRIAARLQNVSADMDPDILQLPGGSVIATLLWLYAKGATVLRKH
Ga0208322_1031665Ga0208322_10316651F009688MLSFPDRHLAHPFGAAGFPTPFSTASGVFGLVAGPSNALRPWILSEAFQLASAGGCATGLPTRSRHACDFFVRVLTTGPGSATAFGGAFARNHGSRLFTLKLPLFHSPAVSFLISPALGSFSRGLPSRRLLPDTSTLFVCLSAFLIWRIQLF
Ga0208322_1034107Ga0208322_10341072F073790MSRFDTLNAAWMVWDGPAPAREEAVLEYTRELEKFLAEIERRAF

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