3300025329: Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-G (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300025329
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0084162 | Gp0116218 | Ga0209072
• Sample Name: Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-G (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 6261842
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): polar biome → peatland → peat soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: USA: Barrow Environmental Observatory site, Alaska
• Coordinates
  • Lat. (^o): 71.299
  • Long. (^o): -156.61
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003758	Metagenome / Metatranscriptome	470	Y
F034279	Metagenome / Metatranscriptome	175	Y
F102122	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0209072_100419	Not Available	601
Ga0209072_100505	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	575
Ga0209072_100857	Not Available	513

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0209072_100419	Ga0209072_1004191	F003758	GTDVEIGKKAIKHISFDPRMSPNVMRAFENAEDEVLMNTLKGAARLDVPSLFRPKFMAEVETEHPEYFADLPKLK
Ga0209072_100505	Ga0209072_1005051	F034279	DLERAREAGATGYVSKDRIAAELVEAIREAAAADSSLS
Ga0209072_100857	Ga0209072_1008571	F102122	MVRAKGRNHPYLELEGEALDNHMMAMHGWSMQMVAVKGTQTLAQKYNYIGDMHRREHHLPPHAVPVDED