3300025219: Marine microbial communities from the Deep Atlantic Ocean - MP0740 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300025219
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053074 | Gp0054069 | Ga0208470
• Sample Name: Marine microbial communities from the Deep Atlantic Ocean - MP0740 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 103592064
• Sequencing Scaffolds: 32
• Novel Protein Genes: 36
• Associated Families: 35

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	1
Not Available	17
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexi incertae sedis → SAR202 cluster → SAR202 cluster bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Odoribacteraceae → Odoribacter → Odoribacter splanchnicus	1
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium PRS2	1
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Deep Ocean Microbial Communities From The Global Malaspina Expedition
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: South Atlantic Ocean
• Coordinates
  • Lat. (^o): -31.81
  • Long. (^o): 6.84
  • Alt. (m): N/A
  • Depth (m): 4001.3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001487	Metagenome	686	Y
F001625	Metagenome / Metatranscriptome	661	Y
F001651	Metagenome / Metatranscriptome	657	Y
F002030	Metagenome	601	Y
F002753	Metagenome / Metatranscriptome	532	Y
F003285	Metagenome / Metatranscriptome	496	Y
F007608	Metagenome / Metatranscriptome	348	Y
F008720	Metagenome	329	Y
F010879	Metagenome / Metatranscriptome	298	Y
F012070	Metagenome	284	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0208470_1006033	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	2240
Ga0208470_1007434	Not Available	1997
Ga0208470_1008396	Not Available	1859
Ga0208470_1008605	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1832
Ga0208470_1014635	All Organisms → Viruses → Predicted Viral	1337
Ga0208470_1014878	All Organisms → Viruses → Predicted Viral	1323
Ga0208470_1015250	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	1303
Ga0208470_1015310	Not Available	1298
Ga0208470_1017250	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexi incertae sedis → SAR202 cluster → SAR202 cluster bacterium	1203
Ga0208470_1018313	Not Available	1158

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0208470_1006033	Ga0208470_10060331	F076187	INPALTVSVIICPDGLVSVAITHFFEFISTEKFFENFKTSRNVKSFPNIPLIPDTDIFNASNLDTLFINSERK
Ga0208470_1007434	Ga0208470_10074341	F012070	MPIEIKMIEAANESYDDYILYEILCDYCDKEYTIKYMMNKRPKQSIECCPFCSNLIEEPAEIIDDEEET
Ga0208470_1008396	Ga0208470_10083962	F060984	RGIRLADDIEREEDRNSFASVKVKVPKEATTEVEIELSTDDLLTLTLAAHDRDITLNQLCNSVLRASLKDLDYRFEHQSKPQVLKEY
Ga0208470_1008605	Ga0208470_10086052	F066848	MRFSTRSIHSLRHPQDDVYRAVSTEVGPGFAMGSSDYVLRTVLKGARQIAADQRLPVDPVAKGAGSEPELNLVA
Ga0208470_1014635	Ga0208470_10146351	F012509	MSDYSTEDIVKYSISSDGSRVKDAIQSVVANKIMKGMEAKKAEVAQAMFNTVPLPDATQEVADTFVAA
Ga0208470_1014878	Ga0208470_10148782	F008720	MEVVQTEDKSFVRDLHSKALINTDRVALENHRKKRQMEIQQARKWQQMETKVKELNNMRNEILEIKGLLQELLNKKEL
Ga0208470_1015250	Ga0208470_10152501	F082562	DSLRNYFLDIELSIIHPLLGGFGGTIGIERNHSSFGVMGFGTKLNHMMKHYFIEDAEELAVYNWGVELYSDYYIKQNHRGLFIGSLVSINGFRFTDIPNPQTILVLYAVPRVGYRICLPKKLNAFYFQPSLTAHIKFWDNQEQFLYREIDTKSIFLLSQLTLGMKI
Ga0208470_1015310	Ga0208470_10153102	F063198	LYIVRMRLEENSLISEDRLILNAPSKIRINRVKVVNTGATEARSSGDVYPNPLGPIRNPSIIRNKTSGMFVRRNNASDKKPKIAIKLNASNAVLTFKILGEY
Ga0208470_1017250	Ga0208470_10172501	F001651	GTGHGGRLTLPKGHSKWMTIGGKPIPEGGYIVPLQNGKKIALAQRRHRVIQAKIEGRSEAQIAEQEGVVQYTIWKDIRAYLGEVRREDKAAVQAEYDLQRARYERLLLRWWDHAIGEDSDHAARATGIVLDILRRLDTIGGLIPEKPLIQLQQQNVMVGGVTFADLLREAMDGAGA
Ga0208470_1018313	Ga0208470_10183134	F012072	MKKYHIKIKDKVVHRTDDMKKALRVIGQIFRDGHGEVSLHGGKIGK
Ga0208470_1021037	Ga0208470_10210372	F090504	MEVFVVLTIIFGLILPYWAGVMAKRKGKSFVLWCILQVLFLFPIVLIAFHSPVEKEK
Ga0208470_1021763	Ga0208470_10217632	F016015	MINVNKFENRIVKFKRIDSEGNISDKEAEVRRMDYNQTEDIPRSVTARLVDPLNFVITLSYDKSKKKFSGPLGTDIWESNFDIDDFITSSKMGTADRYMRSPKRNRARF
Ga0208470_1021943	Ga0208470_10219432	F105490	MKGGQGKHDRQEGAIERIEPTIEKYEKILPAEKELLKLMRKEKDLPPNNIPMMEKKIKQFEKKLERAKMTLENTKANLNG
Ga0208470_1025510	Ga0208470_10255103	F064788	MKYTEKQVNFLKAAIAKYGEGSILTKSNLAEVAEDIGVKFPFWMTDARRSGSYTKIGKDMYRLPAINGGEGASVADIVVDEASEVVIESKNKESAFDMSTYFNPAELIPKKDPLFVAHGHFSDLIKVL
Ga0208470_1025942	Ga0208470_10259421	F049927	IAVPTTDKAVGNVDKDFIEVICDPIIPLKKTVIVAAVNPKT
Ga0208470_1027555	Ga0208470_10275551	F089571	NERKMLKKIIVIVFSVLFLVVPASSQHVQQKYAITDKDEKVILNDNGTWEYAEEDKQNYYYKKVPPKTYNYEFKSQTWEERLEQAAHEYWRIRAHAELEQLGIPVTRYDPTTSDVPLYLKLEGGRIRTDFDSFTPLARGEVIDISGLWDPDKGDNPTLKIQGKLFLQITMKLDDQKKLFSQYNQRNYIPIPDDFQRILEFRDSLDVISLGMHDYNRDNTHIWPGIPHSFLYAPPGSYYDPNNPPIIHGDGFPYIQRGHLTLSRREIPMTNSVYDNLLKRIDNLEGHGSIKIRYD
Ga0208470_1028297	Ga0208470_10282971	F081449	NSGDAYGDIVSVDRHGQGKPTGKKLTVKVELHKVDPYKIWWIGEKTFTHRGQEETFVRFTIDQEGKQVGGFTYEKKKFVTPFGNMGVVNPNRNEPTGASSLESGTEESRYHPGDRR
Ga0208470_1028297	Ga0208470_10282972	F002030	MIGFLIFGLVVLSTICLWILIEERKSWKFLIWFIPILLVIVTSTYVTYTSILGLPKVGIPEKGLYLRHYIDEPNWIYLWVLSKKNVPMSYQLVYSREKHNALEGVKGQAAEGAFMVLGEDESLGPGDGEGDQKGGRSGEGYTIGGDISFYKWDFTDNMPPKNTQE
Ga0208470_1028951	Ga0208470_10289511	F007608	SMYPKIRQQVTDRIATFEKVIEEHAVAQKEALKMIYEQLEEAKNDLKYLDEVN
Ga0208470_1032494	Ga0208470_10324941	F089571	LITPVSSQHVQQKYAITDMDEKVFLNDNGTWEYLGEDKQNYTLKKVPPKTYNYEFKPQTWEERLEQAAHEYWRIRAYAELNQLGIPVTRYDPTTSDVPLYLKLEGGRIRTDFDPFTPLARGEVINIAGLWNPDRGDNPTLKIQGKLFLQITMKLVDQKKLFSQYNQRNYIPISEDFQRILKFRDSLDVISLGMHDYNRDNTHIWPGIPHSFLYAPPGSPYDPDNPPVIRGDGFPYIQRGHLTLARREIPMTNSVYDNLLKRI
Ga0208470_1035323	Ga0208470_10353231	F076171	MTDLKEDHSHPFNSRLEEFRNHVDLKSKKAFYQLAKIDSSQFFRVINGFQKPGFGFFEKIANAFPDLNLSWLLIGEGEMILDRVNDAEKTILENYRKLPDEGKIGFEVRTKLYEWEYMEYKELMGNIVDVAMNNENKLPFMSWELYNCLQVLQNSRVNKIISIQKKPSKMAVFDTSELKSQLKSQLENTEADIQKLISLDAEYIKEFFTNTNE
Ga0208470_1037408	Ga0208470_10374082	F001487	MKKFTIEVSHASPAQLTTIGLELKIMSNGWEKFGLRIKINGQELQAPSL
Ga0208470_1038759	Ga0208470_10387592	F065861	MGIIIVIRRKISLIYRENSIIFDLPFRVVLFMIRGEIIGRNNNSAVLPTLEEGLLHKNKLVLNCLT
Ga0208470_1039115	Ga0208470_10391152	F089159	VSIGKDNLLQAIVQEDNKDSTGFAVKEDIKENHVEDVIARRISQRLQLDSVKINFSAPGDSSREVGDLISFDFPTENSKVAATSGRGAGHKYYSGKFLITSLRHKITQDEYTIHVEAIKDGYKSAISSTFEATAPTVQIPNPKTGLTESPSQNITLGGGLGGGNDSFR
Ga0208470_1041516	Ga0208470_10415163	F038414	MTDELNKKRTSPKTIQIQDSKTARSKAEWLHISTSEEDGEGQGTYNVGSRAMKRERLADKKLRAKQAKAADLS
Ga0208470_1041884	Ga0208470_10418841	F001625	MALTISTSDWTSANVRKTLSWQAALVSKLRVYAIKVTFGSGDNYATNGVSADLKEGRISTLVAVIPTYNNGSHIVVYDKANEKIKLFGSGSGSALTEV
Ga0208470_1042267	Ga0208470_10422673	F085813	DQFEIIWILATVIGALNYGLNAYQKGFRRLLKWDVIYLIILNTLMFVPLSLIVVL
Ga0208470_1045426	Ga0208470_10454261	F040148	KVGKVSMEKLAVLPDSTPPDFGGIQIKEIIPGWGEFFQILENFVKQLKGMISDSVAFIQDMIDMIKGIEKFLQDLIDAIVEFLEFFQITLPSTGVYALYLPNQSGGNDGIKSQLAGAGGIPDLGYAAGILFVATEGDVFIAGGGSKNPIDLLALVLGLL
Ga0208470_1046702	Ga0208470_10467021	F003285	KSDRLNYLMPEQESIHQLQTEIQTLKIKDEFRTKELDALMEKLSDTSSKLNALSENIGRLLAGQELHKTSDNEVRDELKILHTRIGDLHDKCTEMIDKTETRVSSDISLLYKKVDSLEKWRWITIGVATVIAWLLTNIIPKFLSN
Ga0208470_1047454	Ga0208470_10474541	F069334	MTQKYDRFNLESEIMHVWNTKDDLESITSRMMDDPD
Ga0208470_1049923	Ga0208470_10499232	F101292	VIKNANAVMANVPAKDVKRENLATATVIVPAVKKNAAALNKIKLL
Ga0208470_1050931	Ga0208470_10509311	F064802	SCLKEQETFSVMECVHMQQHVLQMSVKVLKTEETIRDLILFTKEKLLHENVDPTGMLPQTLIPPPLIDIPDDERRGVIKALRWVVSDEDIFQRE
Ga0208470_1050931	Ga0208470_10509312	F082813	MKIYFNANNKATLEALEGCGVRNVLLSHRYSYANINKFKSKFDSIFIVPGTKGNPDKYREFLKKKKEYYDYATQFDVFYNMDETLKYLEKEREDGIDWTLPV
Ga0208470_1053299	Ga0208470_10532991	F002753	LTDSDRFTPAVLDVSSVNDTDSVRFTPADFAIESVNDTDSVRFTSADFAIESVNDIDSDRFTPAAFAIESVKLTDSDRFTPAAFAIESVKLTDSDRFTPAVFEIESVNDIDSDRFTPAVFDVSSANDTDSDRFTPAVFEIESAKLTDSDRFTPADFAIESVKLTDSDRFTPATFDIESANNT
Ga0208470_1060069	Ga0208470_10600691	F010879	MAQKRKVLKEVLFDDVEKKIEYDFLTRDQFFTKVPETRPMSVRGIEMWERYLQDPKG
Ga0208470_1060069	Ga0208470_10600692	F016206	MAHAHKGKKKVSKAMGAILKAPKKVEKVVKAAEKYVNKTHWDTKEAFAAAIDASGINPNAINVNSEWDFYQSDKDGYKNHLKLEN