3300025107: Soil microbial communities from Rifle, Colorado - Rifle Oxygen_injection D3 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300025107
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053054 | Gp0055717 | Ga0208863
• Sample Name: Soil microbial communities from Rifle, Colorado - Rifle Oxygen_injection D3 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 339959766
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	2
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Roseiflexineae → Roseiflexaceae → Roseiflexus → Roseiflexus castenholzii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → unclassified Anaerolineaceae → Anaerolineaceae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Rifle, Colorado, Usa
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Loam → Unclassified → Soil → Soil Microbial Communities From Rifle, Colorado, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → land → soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: Rifle, Colorado, United States
• Coordinates
  • Lat. (^o): 39.534762
  • Long. (^o): -107.782602
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002525	Metagenome / Metatranscriptome	552	Y
F038735	Metagenome / Metatranscriptome	165	Y
F050966	Metagenome / Metatranscriptome	144	Y
F096552	Metagenome / Metatranscriptome	104	Y
F105436	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0208863_1002558	All Organisms → cellular organisms → Bacteria	9289
Ga0208863_1020900	Not Available	2021
Ga0208863_1047362	All Organisms → cellular organisms → Bacteria	1232
Ga0208863_1074079	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Roseiflexineae → Roseiflexaceae → Roseiflexus → Roseiflexus castenholzii	926
Ga0208863_1149443	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → unclassified Anaerolineaceae → Anaerolineaceae bacterium	570

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0208863_1002558	Ga0208863_10025581	F105436	MKLVFVNVMQELRRFDSTAYITQPPVPLAILNGATPKEIETALLDEQADRLRFEGDAFAFSVSTQNARAVYEHADALRASGGDARERPCATLFPGGL
Ga0208863_1020900	Ga0208863_10209002	F050966	MSGSMWQGMKTRHGDGTEALSEEMESNGSATPKSRRHPLTLPAD
Ga0208863_1047362	Ga0208863_10473622	F038735	MKRILNSMLGFWLLLLGISLGTAGIIYEVWLKGRI
Ga0208863_1074079	Ga0208863_10740793	F002525	VTCVWAGVDSVWEQEKLEARKMLVNRADSHTSVARFVGWRFSF
Ga0208863_1149443	Ga0208863_11494431	F096552	MKMKNVFAVTSTSLVLLLLAACNAIKPTPAPTQTPQVLPASGEQYYFVTNKLLLPTTQAQTEAYALNVDGDSQQRPDNKFGDLFTLLASAAQGIELQASLDQAVNTGQLVSLHVVKADGLLNDPSVLWSIFAGQKSQSAPRFDGSDNLTVDTAAPAYSPLVGLLTNGRFT