Sample 3300025080

Overview

Basic Information
IMG/M Taxon OID	3300025080 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0111485 \| Gp0154766 \| Ga0209103
Sample Name	Freshwater bacterial and archeal communities from Indian Creek, Illinois, USA - 4C3 metaG (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	104145943
Sequencing Scaffolds	11
Novel Protein Genes	11
Associated Families	9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	5
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	6

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	freshwater biome → bayou → fresh water
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Location Information
Location	USA: Indian Creek, Illinois
Coordinates	Lat. (^o)	41.6655	Long. (^o)	-87.5437	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F002986	Metagenome / Metatranscriptome	515	Y
F011825	Metagenome	286	Y
F013890	Metagenome	267	Y
F021295	Metagenome	219	N
F029754	Metagenome / Metatranscriptome	187	N
F047671	Metagenome / Metatranscriptome	149	Y
F062578	Metagenome	130	N
F078694	Metagenome	116	Y
F090615	Metagenome / Metatranscriptome	108	N

Family

Category

Number of Sequences

3D Structure?

F002986

Metagenome / Metatranscriptome

515

F011825

Metagenome

286

F013890

Metagenome

267

F021295

Metagenome

219

F029754

Metagenome / Metatranscriptome

187

F047671

Metagenome / Metatranscriptome

149

F062578

Metagenome

130

F078694

Metagenome

116

F090615

Metagenome / Metatranscriptome

108

Scaffold	Taxonomy	Length	IMG/M Link
Ga0209103_1002263	Not Available	5347	Open in IMG/M
Ga0209103_1011564	Not Available	1583	Open in IMG/M
Ga0209103_1028826	Not Available	735	Open in IMG/M
Ga0209103_1029932	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	712	Open in IMG/M
Ga0209103_1034544	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	634	Open in IMG/M
Ga0209103_1034823	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	630	Open in IMG/M
Ga0209103_1035591	Not Available	618	Open in IMG/M
Ga0209103_1037457	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	594	Open in IMG/M
Ga0209103_1037547	Not Available	593	Open in IMG/M
Ga0209103_1042357	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	539	Open in IMG/M
Ga0209103_1043530	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	527	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0209103_1002263

Not Available

5347

Open in IMG/M

Ga0209103_1011564

Not Available

1583

Open in IMG/M

Ga0209103_1028826

Not Available

735

Open in IMG/M

Ga0209103_1029932

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

712

Open in IMG/M

Ga0209103_1034544

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

634

Open in IMG/M

Ga0209103_1034823

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

630

Open in IMG/M

Ga0209103_1035591

Not Available

618

Open in IMG/M

Ga0209103_1037457

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

594

Open in IMG/M

Ga0209103_1037547

Not Available

593

Open in IMG/M

Ga0209103_1042357

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

539

Open in IMG/M

Ga0209103_1043530

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

527

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0209103_1002263	Ga0209103_10022637	F090615	IRALQIAAPEPTDPALIAALRVRKGWLRPDSSIVDKAAVEGLKKLGVLLCPPPDPDGKSIPERRFIDIATEYLKAVPQARLLIEESLIEHQASWDPDKVYVERTDADIQEEMVTAIKTANADRLRAAKAKAAAGS
Ga0209103_1011564	Ga0209103_10115641	F090615	DSPIVDKAAVEGLKKLGVLLCPPPDPEGKSIPAKLFNEIAAAYLDAVPQARLLIEESAVEQQASWDPDKPYVERTDVQLHGNLVTAIKMANADRLRAARAKAAAGS
Ga0209103_1028826	Ga0209103_10288261	F021295	MHEFEDDPIYEYAKSVMFQIMTVLYINGRTEAHVGAIMRLLGVDEEHARLHDDERIELDENFARMASELNMNELASVQIPQGTTIH
Ga0209103_1029932	Ga0209103_10299322	F002986	MAEIDETKARLQTHEEVCALRYEGLCARLKRLEGLSITVAGVIIMLLISIIMKMN
Ga0209103_1034544	Ga0209103_10345441	F013890	MGHVEYFDETTGTWTNLEDVPMFDTINCQLCNEPTEAHDIVAEIKFKDDQPIVGAWQCRKCK
Ga0209103_1034823	Ga0209103_10348231	F047671	YMAGGDLKAMAMGGVAAVVPVILRWLNPADKAFGSTGK
Ga0209103_1035591	Ga0209103_10355911	F090615	TLTRNMKLVQMRALQLAAPEPTDPALITALRVRKGWLRPDSSIVDKAAAEGLKKLGVLLCPPPDPDGKSIPERRFIDIATEYLKAVPQARLLIEESVVEHQASWDPDKVYVERTDADIHGNLVTAIKIANGERLRAAKAKPAAGS
Ga0209103_1037457	Ga0209103_10374572	F078694	MPIHKATGPRGGKGFQYGTTGKVYPTRAQAVKQAQAIKASQAAAKKKK
Ga0209103_1037547	Ga0209103_10375472	F029754	MSCNTVTFKRGTSFEAAVVYTPEAGGLANLIGVTVTSTIIDADRNEFELVTVVAGNGLSFTAEYVGDTGDWAVGTARWDIKFTNNDSVFYSDTMRLDVIGQVTV
Ga0209103_1042357	Ga0209103_10423572	F011825	MEQQKKTPVEQYYYSEDEWARLGCGPLPPERDRNRLQDAHAKGNPKIDGKAVKGYN
Ga0209103_1043530	Ga0209103_10435302	F062578	MATTVITGRDVSLSFTGGTDIDAQATSAVLTKTNVREVYQ

Scaffold ID

Protein ID

Family

Sequence

Ga0209103_1002263

Ga0209103_10022637

F090615

IRALQIAAPEPTDPALIAALRVRKGWLRPDSSIVDKAAVEGLKKLGVLLCPPPDPDGKSIPERRFIDIATEYLKAVPQARLLIEESLIEHQASWDPDKVYVERTDADIQEEMVTAIKTANADRLRAAKAKAAAGS

Ga0209103_1011564

Ga0209103_10115641

F090615

DSPIVDKAAVEGLKKLGVLLCPPPDPEGKSIPAKLFNEIAAAYLDAVPQARLLIEESAVEQQASWDPDKPYVERTDVQLHGNLVTAIKMANADRLRAARAKAAAGS

Ga0209103_1028826

Ga0209103_10288261

F021295

MHEFEDDPIYEYAKSVMFQIMTVLYINGRTEAHVGAIMRLLGVDEEHARLHDDERIELDENFARMASELNMNELASVQIPQGTTIH

Ga0209103_1029932

Ga0209103_10299322

F002986

MAEIDETKARLQTHEEVCALRYEGLCARLKRLEGLSITVAGVIIMLLISIIMKMN

Ga0209103_1034544

Ga0209103_10345441

F013890

MGHVEYFDETTGTWTNLEDVPMFDTINCQLCNEPTEAHDIVAEIKFKDDQPIVGAWQCRKCK

Ga0209103_1034823

Ga0209103_10348231

F047671

YMAGGDLKAMAMGGVAAVVPVILRWLNPADKAFGSTGK

Ga0209103_1035591

Ga0209103_10355911

F090615

TLTRNMKLVQMRALQLAAPEPTDPALITALRVRKGWLRPDSSIVDKAAAEGLKKLGVLLCPPPDPDGKSIPERRFIDIATEYLKAVPQARLLIEESVVEHQASWDPDKVYVERTDADIHGNLVTAIKIANGERLRAAKAKPAAGS

Ga0209103_1037457

Ga0209103_10374572

F078694

MPIHKATGPRGGKGFQYGTTGKVYPTRAQAVKQAQAIKASQAAAKKKK

Ga0209103_1037547

Ga0209103_10375472

F029754

MSCNTVTFKRGTSFEAAVVYTPEAGGLANLIGVTVTSTIIDADRNEFELVTVVAGNGLSFTAEYVGDTGDWAVGTARWDIKFTNNDSVFYSDTMRLDVIGQVTV

Ga0209103_1042357

Ga0209103_10423572

F011825

MEQQKKTPVEQYYYSEDEWARLGCGPLPPERDRNRLQDAHAKGNPKIDGKAVKGYN

Ga0209103_1043530

Ga0209103_10435302

F062578

MATTVITGRDVSLSFTGGTDIDAQATSAVLTKTNVREVYQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300025080: Freshwater bacterial and archeal communities from Indian Creek, Illinois, USA - 4C3 metaG (SPAdes)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences