3300025073: Soil microbial communities from Rifle, Colorado - Rifle Oxygen_injection C1 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300025073
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053054 | Gp0055685 | Ga0208245
• Sample Name: Soil microbial communities from Rifle, Colorado - Rifle Oxygen_injection C1 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 242485428
• Sequencing Scaffolds: 9
• Novel Protein Genes: 10
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea	3
All Organisms → cellular organisms → Bacteria	1
Not Available	3
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Rifle, Colorado, Usa
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Loam → Unclassified → Soil → Soil Microbial Communities From Rifle, Colorado, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → land → soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: Rifle, Colorado, United States
• Coordinates
  • Lat. (^o): 39.534762
  • Long. (^o): -107.782602
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046735	Metagenome / Metatranscriptome	151	Y
F060838	Metagenome / Metatranscriptome	132	Y
F091086	Metagenome	107	Y
F091594	Metagenome / Metatranscriptome	107	Y
F094578	Metagenome / Metatranscriptome	106	Y
F094884	Metagenome / Metatranscriptome	105	Y
F100657	Metagenome / Metatranscriptome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0208245_1000225	All Organisms → cellular organisms → Archaea	53404
Ga0208245_1000258	All Organisms → cellular organisms → Bacteria	49222
Ga0208245_1000662	Not Available	26368
Ga0208245_1000717	All Organisms → cellular organisms → Bacteria → Proteobacteria	24853
Ga0208245_1002468	All Organisms → cellular organisms → Archaea	9419
Ga0208245_1002606	Not Available	8972
Ga0208245_1025945	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium	1450
Ga0208245_1043443	All Organisms → cellular organisms → Archaea	994
Ga0208245_1099942	Not Available	534

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0208245_1000225	Ga0208245_100022555	F094578	MINEKERPKWPMQRLKGMYFAMHCWKCKKFELPQEEFEQTEYEKSCEPNIQKIIHRLDLKEMRFKDFNIIIKNSVFCKFEKRDFSNNCPICKKFGVPNHF
Ga0208245_1000225	Ga0208245_100022561	F094578	MEKAYKKERPKWPMQRLKGMYFAMHCWKCKKFELPEEEFEPTEYKLKCEKNIQRIIDILDVKEMKFKDFNNIIKNSEFCRFEKRDFSNNYPICKKFGITNHL
Ga0208245_1000258	Ga0208245_10002582	F100657	MTQITISYTTSVFTPAGWRNETVTATVEVISPKRGRVLCVQDIGGNGNSGYGSRTGAKRQAYHVGGIAMREQGKIKNLSACCIL
Ga0208245_1000662	Ga0208245_100066218	F094884	MPKDKLIGTAYVNIIKDEKGQVKFAYGYELDDNAVSLNDLGMLNSFLGKLKNKAQEDFNERLDINDKEFSIEKDGVEEDEGN
Ga0208245_1000717	Ga0208245_100071732	F091594	MSENGITHYCLGNGECGGCQQEKNWQTLNQMPDALRKPLQAQAQRIDDTDCILAGRPWRVGA
Ga0208245_1002468	Ga0208245_10024681	F094578	MINEKERPKWPMKRLKGMYFAMHCWKCKKFELPMEEYQKLCENNIQKIIDNLEIKEMKFKDFNNIIKNSEFCKFEKRDFSNDCPICKKFGIPSKPF
Ga0208245_1002606	Ga0208245_100260617	F060838	MVTLQYVSLTEEQKELMQKFRDEYEALYNKVAKLSKSRELSLALTNLEQSAMWLDKSITQND
Ga0208245_1025945	Ga0208245_10259452	F060838	MQYVLPTAEQLEMMQKFRDLYQALYQEVNQLEKSRGLSLALTNLEQSAMWLNKSITKND
Ga0208245_1043443	Ga0208245_10434431	F091086	MQDIINTIKISNNPNEVKQILKSLKIKDVIKVAKCLGIFIRGNENKTEII
Ga0208245_1099942	Ga0208245_10999421	F046735	LKLNVFERLLIRNIVPQIQGWNYAHMKEARELLEGLFTEQEETDLQFEQVETQVKWRVAQEDGTPIPQERDIPVSDGLKSKVGKFLKQLDKEEKLDFSHMTLYGKF