3300024037: Soil microbial communities from Shasta-Trinity National Forest, California, United States - GEON-Q75

Overview

Basic Information

• IMG/M Taxon OID: 3300024037
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0132900 | Gp0272158 | Ga0233355
• Sample Name: Soil microbial communities from Shasta-Trinity National Forest, California, United States - GEON-Q75
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 22778671
• Sequencing Scaffolds: 8
• Novel Protein Genes: 8
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3
All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1
Not Available	2
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Chondrichthyes → Elasmobranchii → Selachii → Galeomorphii → Galeoidea → Orectolobiformes → Hemiscylliidae → Chiloscyllium → Chiloscyllium punctatum	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil And Plant Litter Microbial Communities From Temperate Forests In California, United States
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil And Plant Litter Microbial Communities From Temperate Forests In California, United States

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): forest biome → solid layer → forest soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: USA: California
• Coordinates
  • Lat. (^o): 40.2523
  • Long. (^o): -123.026
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008145	Metagenome / Metatranscriptome	338	Y
F010196	Metagenome / Metatranscriptome	307	Y
F023884	Metagenome / Metatranscriptome	208	Y
F036627	Metagenome	169	Y
F040609	Metagenome / Metatranscriptome	161	Y
F053496	Metagenome	141	Y
F079081	Metagenome / Metatranscriptome	116	Y
F092928	Metagenome / Metatranscriptome	107	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0233355_100385	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	935
Ga0233355_100481	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	878
Ga0233355_101689	Not Available	621
Ga0233355_102013	All Organisms → cellular organisms → Bacteria	593
Ga0233355_102732	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	548
Ga0233355_102956	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	536
Ga0233355_103107	Not Available	530
Ga0233355_103677	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Chondrichthyes → Elasmobranchii → Selachii → Galeomorphii → Galeoidea → Orectolobiformes → Hemiscylliidae → Chiloscyllium → Chiloscyllium punctatum	506

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0233355_100385	Ga0233355_1003851	F079081	MIESFKHLEALAAERDLADVFLETDEQEHAVPAEMIVEALRKRRAVMRDCVERGRNSDGASMGRLVGGEARLLQQAFTEGRTFLDPLTIKAEL
Ga0233355_100481	Ga0233355_1004811	F092928	AAFEEMVLAQGLGDADREAPRDEEGDRGPGAPAGRDHAPHMG
Ga0233355_101689	Ga0233355_1016892	F010196	VTGVRLLIGVIVMGIAVPITLFLLLGLHTMPQLFTMATVTLLAWGVADLLSMILEKPRLQGRSPGKALKEDWDRRSQE
Ga0233355_102013	Ga0233355_1020131	F023884	FVSNARQRNLGRVAYCESLPHRLWVTLSRVRTAKGAWDIWYLISNRGRRAQATAAEYARRFGCEQGFRDAKWELGFAQARIQNIRAWSRLFALFALALLVVVSLGGKLLVRGGAEAVALLRRVASRRRGRWDLSVVSAIVALLHTDKSLFAHLSPRITLDLEASLANVS
Ga0233355_102732	Ga0233355_1027321	F053496	VSVTAEVVWTSLKAITGSAQRTFRAGLLVAEKAELMRLAIGRLSDMNRAALDLHSLRLKLRILRARARQLAPSYPQIEESGIPAEQYLLIQGVREELRLNPEEAMHWYRRARLIINDPATREAAPPIANHPDALAVWEYLDRSVDPSIVSRAFELP
Ga0233355_102956	Ga0233355_1029561	F008145	MPVRGEEVASSIDAHVRESIERMVGEIRSSIEDVRVAVDQQLKAALQSVQADVNSITFLPQIRKSVVELEETMAAEAPVAAPAAPSVGGASRVKAAVQAIESGRSQVDVLNALLEQSLQFGSRAALLILRGETFSGWKGVGFSAQGGNDEMVKRFNAAPGLIP
Ga0233355_103107	Ga0233355_1031071	F036627	MKSDTEIVETSNQNNQMQDIESFKTNPNSLKLDHRKLR
Ga0233355_103677	Ga0233355_1036772	F040609	MQEGDALNALTFPALAFAGLLRRTRLFVPVRLRRGITTTTAAGTARAF