NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300023697

3300023697: Metatranscriptome of freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 3-17_Aug_MT (Metagenome Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300023697 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0131212 | Gp0267130 | Ga0228706
Sample NameMetatranscriptome of freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 3-17_Aug_MT (Metagenome Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size90506892
Sequencing Scaffolds39
Novel Protein Genes47
Associated Families37

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes1
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales1
Not Available21
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Mucoromycota → Glomeromycotina → Glomeromycetes → Diversisporales → Diversisporaceae → Diversispora → Diversispora epigaea1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora1
All Organisms → cellular organisms → Eukaryota → Metamonada → Fornicata → Diplomonadida → Hexamitidae → Hexamitinae → Trepomonas → unclassified Trepomonas → Trepomonas sp. PC11
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Enterobacter → Enterobacter cloacae complex → Enterobacter hormaechei2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila1
All Organisms → cellular organisms → Eukaryota1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Pseudo-nitzschia → Pseudo-nitzschia australis1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Postciliodesmatophora → Heterotrichea → Heterotrichida → Stentoridae → Stentor → Stentor coeruleus2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameFreshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater biomebayoufresh water
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationUSA: Georgia
CoordinatesLat. (o)33.9301Long. (o)-83.5517Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000212Metagenome / Metatranscriptome1580Y
F000237Metagenome / Metatranscriptome1498Y
F000344Metagenome / Metatranscriptome1257Y
F001633Metagenome / Metatranscriptome660Y
F002654Metagenome / Metatranscriptome539Y
F005443Metagenome / Metatranscriptome400Y
F011850Metagenome / Metatranscriptome286Y
F013050Metagenome / Metatranscriptome275Y
F014988Metagenome / Metatranscriptome258Y
F016159Metagenome / Metatranscriptome249Y
F019483Metagenome / Metatranscriptome229Y
F020197Metagenome / Metatranscriptome225Y
F020700Metagenome / Metatranscriptome222Y
F021791Metagenome / Metatranscriptome217Y
F023352Metagenome / Metatranscriptome210Y
F030315Metagenome / Metatranscriptome185Y
F031504Metagenome / Metatranscriptome182Y
F033058Metagenome / Metatranscriptome178Y
F039671Metagenome / Metatranscriptome163Y
F044151Metagenome / Metatranscriptome155Y
F044534Metagenome / Metatranscriptome154Y
F044934Metagenome / Metatranscriptome153Y
F045132Metagenome / Metatranscriptome153Y
F047066Metagenome / Metatranscriptome150Y
F049453Metagenome / Metatranscriptome146Y
F051728Metagenome / Metatranscriptome143Y
F051950Metagenome / Metatranscriptome143Y
F054064Metagenome / Metatranscriptome140Y
F065812Metagenome / Metatranscriptome127Y
F069733Metatranscriptome123N
F069751Metagenome / Metatranscriptome123N
F082866Metagenome / Metatranscriptome113Y
F085004Metagenome / Metatranscriptome111Y
F085728Metagenome / Metatranscriptome111N
F102643Metagenome / Metatranscriptome101N
F104572Metagenome / Metatranscriptome100Y
F105212Metagenome / Metatranscriptome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0228706_1000412All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium4615Open in IMG/M
Ga0228706_1000659All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes3871Open in IMG/M
Ga0228706_1000919All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales3401Open in IMG/M
Ga0228706_1004290Not Available1681Open in IMG/M
Ga0228706_1005451All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Mucoromycota → Glomeromycotina → Glomeromycetes → Diversisporales → Diversisporaceae → Diversispora → Diversispora epigaea1506Open in IMG/M
Ga0228706_1006547Not Available1387Open in IMG/M
Ga0228706_1008063All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora1263Open in IMG/M
Ga0228706_1010103All Organisms → cellular organisms → Eukaryota → Metamonada → Fornicata → Diplomonadida → Hexamitidae → Hexamitinae → Trepomonas → unclassified Trepomonas → Trepomonas sp. PC11135Open in IMG/M
Ga0228706_1010549Not Available1112Open in IMG/M
Ga0228706_1013935Not Available970Open in IMG/M
Ga0228706_1019808All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Enterobacter → Enterobacter cloacae complex → Enterobacter hormaechei819Open in IMG/M
Ga0228706_1019857Not Available818Open in IMG/M
Ga0228706_1019865All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia818Open in IMG/M
Ga0228706_1020317All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila809Open in IMG/M
Ga0228706_1020803Not Available800Open in IMG/M
Ga0228706_1022153All Organisms → cellular organisms → Eukaryota777Open in IMG/M
Ga0228706_1022202Not Available776Open in IMG/M
Ga0228706_1022689Not Available768Open in IMG/M
Ga0228706_1022722All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Pseudo-nitzschia → Pseudo-nitzschia australis767Open in IMG/M
Ga0228706_1023256Not Available759Open in IMG/M
Ga0228706_1027927Not Available696Open in IMG/M
Ga0228706_1028142Not Available693Open in IMG/M
Ga0228706_1029871Not Available674Open in IMG/M
Ga0228706_1030368Not Available669Open in IMG/M
Ga0228706_1033091Not Available642Open in IMG/M
Ga0228706_1034344All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Postciliodesmatophora → Heterotrichea → Heterotrichida → Stentoridae → Stentor → Stentor coeruleus631Open in IMG/M
Ga0228706_1035495Not Available622Open in IMG/M
Ga0228706_1035590All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Enterobacter → Enterobacter cloacae complex → Enterobacter hormaechei621Open in IMG/M
Ga0228706_1036556All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea613Open in IMG/M
Ga0228706_1037192Not Available608Open in IMG/M
Ga0228706_1038526Not Available598Open in IMG/M
Ga0228706_1041946All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea575Open in IMG/M
Ga0228706_1042691Not Available571Open in IMG/M
Ga0228706_1044270All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea561Open in IMG/M
Ga0228706_1044352Not Available561Open in IMG/M
Ga0228706_1048824Not Available536Open in IMG/M
Ga0228706_1049707Not Available532Open in IMG/M
Ga0228706_1055741All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage506Open in IMG/M
Ga0228706_1056036All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Postciliodesmatophora → Heterotrichea → Heterotrichida → Stentoridae → Stentor → Stentor coeruleus505Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0228706_1000412Ga0228706_10004127F020197MNEDYQKPFSISYVLRTTAKHMRKSIDISIRKTFERVPEFANDQAKSQEVFKTLASLHMLRKQLDDFQSQNSEDFKGE
Ga0228706_1000412Ga0228706_10004128F054064MNEGIKSLIGRKMTKQFKFMNEDLKISKLSVAEVMTIQERAKNVETDDSAGFEVLKTIIMSAVEGGKDLTDEDFKAFPMDELSKLSNEIMKFSGIGADQGK
Ga0228706_1000659Ga0228706_10006593F005443VRRRAYAGKQSSILLDLCPVVNVTIMITNTLNTNEVKNAAGSEVEFTRLSIADRKTEFALINENPATPHRLSISHSESGNGVRRRRRSVVRIDKTVVSTVDSITPVKVSCYIVLDTPQGALVTGTENVNVLAEILSFCATTGAASTVLFDGTGTGAQVLLTGGL
Ga0228706_1000919Ga0228706_10009192F014988MSFAPSSPVTGAAVTGLTTPTYTLVSDTAPSINGKQYAVSALGGTQTNVDVNSVSKPFTITFFRPSVLKVLPQANPVTGLVKNVPVNTYKLITRKGAQPGANQANSVARITTTIEVPAGTDTYEPEELRALISSHFGVGWGSASGIADTVLTGVL
Ga0228706_1004290Ga0228706_10042903F039671MKEPLVMMLLITPPTVSIPKDNGVASIITNPSVSFDSSPQMIPP
Ga0228706_1005451Ga0228706_10054511F082866MHHQLPDRKRTLNLLLRKASGSGKICVLGQIKPQTPRLVVSFRQYLQVSILQSYSPQNPKPCGFP
Ga0228706_1006547Ga0228706_10065471F021791MNINNILVRFYADYRIKPHVPPFEQIPANSVKFQPCDYTAQAEYLKR
Ga0228706_1006547Ga0228706_10065472F030315VIKYSKFIIIINYENILLIKSDVETLKYKYRIGLDTLVVYTIKYEYINNLLFKLTF
Ga0228706_1008063Ga0228706_10080631F044934FITPFSSNMKYSGFGAQDVLLVAVVLAGISTTISFTNLLITRRTLVAPGLRNRRVLIPFITISLLLTLRLLAIVTPILGAAVLMSLMDRH
Ga0228706_1010103Ga0228706_10101032F082866MHHHQPNRKRTLNLLLHKASGPGKFCVLGQIEPQTPRLVVSFRQCFQVSALQPYFPQSLKPSGFLGAVSTAPTA
Ga0228706_1010549Ga0228706_10105492F085004MGLKTMSLLAGATIAASGGTALGFTDDGVTIANGLHLVVPADADYQTRRQVTVKYRQPTLDAKTGVYGKDKKSISLALPIVLPSGAVVFNTIRIEREIHPSLSAAEALELNKLGAQLLTDSDVENFWAAGSLS
Ga0228706_1013935Ga0228706_10139351F002654LSYQTFNDKVVCQKGNSPEQVFKVPKLLLSESKEVFKLYNQEIGLEAAIF
Ga0228706_1019808Ga0228706_10198082F000344MRPRHPHAAESGVGKHKARESESAKRCAAGKERVANAHPH
Ga0228706_1019857Ga0228706_10198571F069733MMGRSSFCNCSFPSGLYIPSLHRLSGQSCDWFENRRFLHYSCEQFGKPDLKGVGFLQILIQAFLRLLKFSTCFMPYLLIACLISLPCGFVIKQKIAECRSFVRRIKIFLRISLSHAAFANLYYLASIYPGHPCEQPAQLKLFTKIDLGYSASTYLSYPCEQLTQLRLFASICLAAKIHSLLRGLASVWIFVPCETLKPLCLKRTFSTSWDRTVSDIAIVDLSCTGILINTG
Ga0228706_1019865Ga0228706_10198651F000344MRPRATPAALSGVGEHTARESERAQCRATGKECVASTHP
Ga0228706_1020317Ga0228706_10203171F023352MRPKPPHAAESGVGEYTARESEAPNSVPSGKSAWRT
Ga0228706_1020803Ga0228706_10208031F000344MRPIHPHAAESGVGEHTARESERAQQCAIGKERVANA
Ga0228706_1021060Ga0228706_10210601F069751VVSGQRTAKSGGSPGASGEDADASHKRVFTWFADWRRKRQLKQAKRPHSKSCRRETLDGPATRPTTPLAVENSVGESAVTYVTPNADIGKESVANSH
Ga0228706_1021215Ga0228706_10212151F102643LGLQPKTGGRSHPKLNILGRPIAKKYSDGKVKITLKRRSKVLETVKRETDGASNYPMGMQIIHFYSASQLVNKSTECLVGWLLGYYVRYLVCMFVNIKCERGIFHEGR
Ga0228706_1022153Ga0228706_10221531F065812INGKPIANKYCEGKMKRTLKRGLKDLKSLRRKAVEEK
Ga0228706_1022202Ga0228706_10222021F019483MANGTGTSTINFGSFPGANEASVAVTGLTTISATSKAEAYFMGDDTSGTHTAADHRYAPLFINLTCGTPTAGTGFTIYGRCLDKMQGSFN
Ga0228706_1022689Ga0228706_10226891F105212HKGSPKNGGSGQEFLNEFEAKSYGSQDLHHGWVGVWVNEEKSKVARPTKKC
Ga0228706_1022722Ga0228706_10227221F011850ADIAQGAQTFFSSALENVPFIDEVTGEPQGFTAPKNHFASVIGLWVLFALPVWSAAYKQAGCTTPDWFGVSQVSESAPGVGLIAKAAPEYNGPSFREGLEYVFSFFWKPPILIAWKPRADLDRESMDPARDTVVSKLYKGLGGALDKTAIYDEEDQLLILSDIVTFEETDLGRRREKTAEAAGWYTGNPSFGRSLIEYSEQTRKGKREQGTVTISTAELAKLRAEAAKK
Ga0228706_1022994Ga0228706_10229942F033058VADPVLSGKDAEESHKCVFTWSAGRWRNHQPKWAKRPHSKFSDREVLDGPAMRPQTPLAVENGVGKPAAPEA
Ga0228706_1023256Ga0228706_10232562F047066VALANAPLPAVADQCQTVKTRKRNYRCVLTWFASRWRNHQPKRAEKPHSKSANRKVPDGPATRPVTPLAVENGVGKPAA
Ga0228706_1027927Ga0228706_10279271F000344MRPKSPHAVESGVGEHTARESERAQRCATGKERVANA
Ga0228706_1028142Ga0228706_10281421F021791VRFCADYRIKTHVPPFEQIPANSVKFQPCDCTAQAEYLKR
Ga0228706_1029871Ga0228706_10298711F104572MRPIALLAAGNGVGEAAADRKIERPLSVKVKECVATSH
Ga0228706_1030368Ga0228706_10303681F065812NIYGKPIANKYYEGKMKRTLKRGLKDLKSLRRKAVEEK
Ga0228706_1033091Ga0228706_10330911F045132VLIYSSNLYPLGNCDSPRPETSLSYLTRFGAVSNRTSPPSPFFAFTDGARTPPEELVNPASAAKCISTRLQRGLVNQPDPAIPRSPGRILETAASELLSTGLPSQ
Ga0228706_1033606Ga0228706_10336061F000237XYYLYLIQLHVLFCHESXDSDSGEATYEDKSGSYISXFYDAFLKEIQDAXYXTMFVFIYFXLHHFNPSTVNYFFFERXNIAELDEIRFYGVAPHXYFRPLMGLLVISPTHYEGLMXMGLFFILLTFLPVIYNXFNVYNKHVPAIPMQNSLLQTFAFVLFCMSLYCTASILPCGRYYYEPEGGYVGNPXIKFSLQYIYLYLAXFVHHLDLIDH
Ga0228706_1034344Ga0228706_10343441F051728DGSKVKGAIRKIYSTMLRMPRTAIEKWKKYLEGLKNKSFFDNIRSLKVKGCLEGIIKRTTRDASQRVIGGGNKIKGCLQSLINGLNNIPKKALRRWNKVVDDIKNKRLYDNARSAKLQLSLERIQRRTMKEAAERLKGLIFLSASLRSTIKRLDGILKRKPKQAFDKWRKYVQAVNNKEFLDGVKSRELKARLDKVARRTLRDATERIIV
Ga0228706_1035495Ga0228706_10354951F045132VLIYSSNLYPLGNCDSPRLETSLSYLTRLGAVSNRTSSPSSFFAFTDGARTPPEELVNPASNCKCISTCLQRGLVNQPDPAFPRSPGRIL
Ga0228706_1035590Ga0228706_10355901F044534PSRRRKPARGIYHQFLWPESCPVSSHTNQELSGKARLETALNRVRPTGSFDPCADAVTPEGFGCYCADQNAVTFPGGPTPPKGLVRRTSEARNGSGTAGRERIWQSP
Ga0228706_1036556Ga0228706_10365561F016159MKQGYVHPYHSDKYPVMFSHFHYMKTLFEAVGPEQVSPHYETLSRSRRGVLFIFLYIGSISTLSRLGGWSHNEWLRGMIWHHEFLIAFYLGYAEVRHFTYFLGPKFTVFYNVYSRYETQQLCTMWADVTEEEQLKHLRHTKEQMEYVRIQQEWD
Ga0228706_1037192Ga0228706_10371921F001633AFAGGVLPDATLRGMRMSRSHGGTVLTVAGRDLSSEASAPGSDTPCRERRDGRSADTPAILIVSRRHCYHGDGTGF
Ga0228706_1038526Ga0228706_10385261F085728MPDVSTVNVPLSPPETPHRKVTHYKPGLASLNLQPVNSVLQSLWSGGPGCSTKNTLFKRATSKKSEDLSKVPPEGGKS
Ga0228706_1041946Ga0228706_10419461F051950ISTESSYQLNFNVGFSTTRSDVLVHLAQXQYXXWFXFAFLXSFYYLVSTRIVRYRSLKMRPKMSTSFRPHGKXGDFLAAIIPAIXCLNILTNSNFILRLIEWQNESSLFTIRVRARQWYXIYKFELKNFTDILTIPKNVGYNRXCVNTFGDLQVAEDYLYVLQLRSQNKXVKNYXSDILQKTNNVKKNHLV
Ga0228706_1042691Ga0228706_10426912F044151YFLEPMLIELGLGTSVDERDRLASDEPNVNLTSPT
Ga0228706_1043205Ga0228706_10432051F013050MSKGKQPRTRVKVPKLLLSEIKKVFIQVDKEMGLEAAIIQRPRNRALVNF
Ga0228706_1044270Ga0228706_10442701F051950TETSYQLNFNIGFSSLKSDVLIHLAQXQYXXXFXFALVXSFYYFLILRVARYRVLKMRPKLATSFRPHGKXGDFLVCIIPLIXCINILTNSNLILRLIEXQNESSLFTVRVRARQXYXIYKFELKNFTDILSAPKNIGNNRXQINTFSELQTADEYLHILQLRSQNKXIKNYXDKSLQETGKTNKA
Ga0228706_1044352Ga0228706_10443521F049453MRPTSPLAVENGVGKLAANLAPNASPGKRAWRTPIPKFCP
Ga0228706_1048824Ga0228706_10488241F031504MPRALTTRKWELAARGRDYQLIPTFPRLPGIIPEDPAGRPPLARQPLRKPS
Ga0228706_1049707Ga0228706_10497071F020700MTARLSLHLRFAKLCPKTLRGVFSDAAAGIAATSKELNFPVLFQVVKPEKVRRI
Ga0228706_1052368Ga0228706_10523681F000212IYLLLAIILASSVTSSLMRSQCHPQCSWKCDDPHCPAICDPVCEPPKCHTSCAEPKNAICDVKCEKPECEIKCPDKGCEMFDCPKCVTVCKAPHCVTHCQAPKPECEAVCEEPKCDWKCHKPNCPKPKCELVCENPNCVPKVECCPCAMGGARVAHPLPFFKESEKNTQCCSC
Ga0228706_1055741Ga0228706_10557411F019483MANAIGTAEIDFGAFPGSNDASVTVTGQTTISATSKVESFVMADDTSTDGHTANDHRYFNMLAWLTCGTPTAGTGFTIYATSQQKLQG
Ga0228706_1056036Ga0228706_10560361F051728RRTLRDATERILGDGSKVKGAIKKIYSTMQRMPKTALEKWRKYLQGLKDKSFFDNLRSAKLLNCLSRIPIRRTRDAAQRILGGGNKIKGCLQNLINGLKNIPKKALKKWRQTVEDIKNKKLYDNARSAKLKYPLERIARRTMNEGKERIRGLMFASPAVKAVIKRMDG

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