3300023668: Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRE4 (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300023668
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128948 | Gp0290743 | Ga0247525
• Sample Name: Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRE4 (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 28948333
• Sequencing Scaffolds: 29
• Novel Protein Genes: 29
• Associated Families: 24

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	22
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → Narnavirus → unclassified Narnavirus → Plasmopara viticola lesion associated narnavirus 22	1
All Organisms → Viruses → Riboviria → Orthornavirae → Kitrinoviricota → Alsuviricetes → Martellivirales → Togaviridae → Alphavirus → unclassified Alphavirus → Fusarium sacchari alphavirus-like virus 1	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea sitchensis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Kineosporiales → Kineosporiaceae → Kineococcus → Kineococcus xinjiangensis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Czech Republic: South Bohemian Region
• Coordinates
  • Lat. (^o): 49.0427
  • Long. (^o): 13.6161
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000565	Metagenome / Metatranscriptome	1021	Y
F001758	Metagenome / Metatranscriptome	640	Y
F003050	Metagenome / Metatranscriptome	510	Y
F006375	Metagenome / Metatranscriptome	374	Y
F007328	Metagenome / Metatranscriptome	353	Y
F010305	Metagenome / Metatranscriptome	305	Y
F016972	Metagenome / Metatranscriptome	243	Y
F018933	Metagenome / Metatranscriptome	232	N
F024793	Metagenome / Metatranscriptome	204	Y
F025019	Metagenome / Metatranscriptome	203	Y
F025423	Metagenome / Metatranscriptome	201	Y
F030305	Metagenome / Metatranscriptome	185	N
F030619	Metagenome / Metatranscriptome	184	Y
F044295	Metagenome / Metatranscriptome	154	Y
F044777	Metagenome / Metatranscriptome	154	Y
F050832	Metagenome / Metatranscriptome	144	Y
F060406	Metagenome / Metatranscriptome	133	N
F065397	Metagenome / Metatranscriptome	127	Y
F068861	Metagenome / Metatranscriptome	124	Y
F070360	Metagenome / Metatranscriptome	123	Y
F071421	Metagenome / Metatranscriptome	122	N
F089697	Metagenome / Metatranscriptome	108	N
F097372	Metagenome / Metatranscriptome	104	N
F102319	Metagenome / Metatranscriptome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0247525_100644	Not Available	2778
Ga0247525_102173	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → Narnavirus → unclassified Narnavirus → Plasmopara viticola lesion associated narnavirus 22	1923
Ga0247525_102759	Not Available	1762
Ga0247525_105615	All Organisms → Viruses → Riboviria → Orthornavirae → Kitrinoviricota → Alsuviricetes → Martellivirales → Togaviridae → Alphavirus → unclassified Alphavirus → Fusarium sacchari alphavirus-like virus 1	1249
Ga0247525_106957	Not Available	1089
Ga0247525_109413	Not Available	885
Ga0247525_109494	Not Available	879
Ga0247525_111085	Not Available	785
Ga0247525_111912	Not Available	738
Ga0247525_112113	Not Available	728
Ga0247525_112832	Not Available	693
Ga0247525_113415	Not Available	668
Ga0247525_113444	Not Available	666
Ga0247525_113631	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	659
Ga0247525_114419	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	631
Ga0247525_115132	Not Available	607
Ga0247525_115207	Not Available	604
Ga0247525_115366	Not Available	599
Ga0247525_115411	Not Available	598
Ga0247525_115962	Not Available	582
Ga0247525_116094	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea sitchensis	579
Ga0247525_116140	Not Available	578
Ga0247525_116423	Not Available	571
Ga0247525_116439	Not Available	570
Ga0247525_116569	Not Available	567
Ga0247525_117111	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Kineosporiales → Kineosporiaceae → Kineococcus → Kineococcus xinjiangensis	553
Ga0247525_117350	Not Available	546
Ga0247525_117988	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	531
Ga0247525_118315	Not Available	523

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0247525_100644	Ga0247525_1006442	F016972	VRLTPLTDAIPVVNLYLTIYEFYIFSFGTKTSRYDPYEL
Ga0247525_102173	Ga0247525_1021731	F030619	GILLCHNVRGSALHSKRWKNVPCNIRKNVVDTLCHLAVRQPENGFAFTRLSRSLPEPPQRECVRHLQAAKLMASTEFPTSVAALDSLRSFVALTPGVSGNGVLRHPRRLPSSSSSCLEWPATRGGIDGYLEHLGHMCEEAGATQSSFHAYAGDSLGGFCLRKASVVLRPCAGVAADLRESYRCAGLLYLRSQGKPFGMKATALRTPGYKVRVVGVPDCLTFVEGSWVRSSLRWLAPGHWRIDGESRKIPGGLHYRAGRRFASLDLSKATDGLSHPAVRVVIEGLALRGLIRLTDLAMSMRSLGLERGATWSFPDLGDKIGEGSFLRGSPMGTPLSFVVLSWVNAWATSTFSRALTHGDDAVGRYTPGSLELDLYASRVASVGAALNREKTFKADHAWTACEILALPRSHGEDKMTLFYPPSIPPPALRAPVEADQRLENLWLRRMERIMKSRFPWIVKDPRLHLPVQVGGLGYTGRGLAVGVSVRRRLGALVSRGPSAVIAADLIGKKPFREVGLYPRPLCRVVRPGSYWKAVRVTEQWFQAGGDTHVPLESLLSFKSCLIEDEVRLLEGDKFKRKRVAGRPDRTRAGAVFRRLGVAPCRPLTRRWGCSALIRWASLSRESEVTVPEDIASEIRERIPDP
Ga0247525_102759	Ga0247525_1027593	F097372	MSSESIAHTIRNILEQCNSTTISIGHTEGHFLSSKQFAVLEECADTLESLESVAGIDTPSSSAIIQASTEEDGVRSRRLQLAREIKQKQIQLTAASPSNRSQINLDIGKLLSERAKLDKLIKQFDTATIV
Ga0247525_105615	Ga0247525_1056152	F097372	MSDESIAHTIRNILKQCSSTVISIGHTEGHFLSSKQFAVLEECADTLENLESVAGVDTPTTSAITQASSEEDGFRARRLELARELKQKQIRLTAAPPGDRSQINLEIGKLLSERARLDKLIKQFDATTIA
Ga0247525_106957	Ga0247525_1069572	F068861	MPSITASRLIAEYGSDQDYKFAGAVQVKTATTLTTTFGSVMRYEPWTNTGARELLKHHPIGVWKELSVRLAPRPGIYGRMCTFYGGWAAAGVVTPTTAEEMVALHGAIDVTYGGTGDPGTVKVQIPCEFDDTMKDLLKGPDNDNSRPVFFYAFTETDVVDKPANSDRFMLTFKGKYTLHGRY
Ga0247525_109413	Ga0247525_1094131	F089697	VSILITRSTVGAASSGYPSGRPPAFAGAATIGCAGFQNSDLRRRPALQLDRWPTFRLGSASCPSARPAANFRLASNVPLFRSSFGDPSGLRLTILVSPGLRPTILVPSGLRRMALPPARPTTYLRFASMPSFDSAGGFIRLAPYAAPAPRLAPLPVCTGCFTLRLDRP
Ga0247525_109494	Ga0247525_1094941	F030305	LQFIGSCIVPFGFLVPVPSFLFPALSDLARRCSSGRPVPRVSDRTGDEASSCPDSSVFSAVPADGSSSRPDSRILQLGYPQIARLPRLSTSCLAVDERPGCPDRSIIWLYRRRRFRVAPNLTSFGGTVSNSPSRPGSSLLQPLPLMVLRVAPGAPSSGFAGGDSSGCPEALIPRLCRLVALRVSPNLPPSDICRFRSSGLPQIGFLGGSMVNPRFARTLHPRSIQLTSLQVAPKLPLPAAPRMNLQTHSGLAFLPTLRCSLNLYPLFACRRTGLLRTTINQFPIACRAGLQS
Ga0247525_111085	Ga0247525_1110852	F010305	LKRAEKPHLKFSGRKTLDGPATRPQTPLAVENGVGKLTAPEKGAPNVSMGKR
Ga0247525_111912	Ga0247525_1119122	F102319	MIPGPITSWSKSLLRYKSKSMVMDVVAADKTNLMKEEKDGPSRAMLSSILLSVLHV
Ga0247525_112113	Ga0247525_1121131	F006375	SASILSLNMSANNSQVPASTGTIGATTAAVTQLVQNTGAFQSIPRGISSIGQGHDAGLFSREWTVVTYYNTDDWTQGGPFATAGSRFIHGSVVPSTTGIVTGITHRYSDAKFIKLELKFVPMRGAAGHVFDIAVGVSQGRETAPADRTAIELLEGNTYVDMVPLMSVSGFPAPATWEINMDLPFITNVFKPANFYQQPPRLNYNARLHFPAALTTSQPLLAVRVRVVGAAF
Ga0247525_112832	Ga0247525_1128321	F024793	VNSASPELSLWFQRSRINQPDPAFPRSPGIIHKLDNFNFTLN
Ga0247525_113415	Ga0247525_1134151	F071421	VGYKEGAPPKGTQPGTAPGTQGSTEAAQQAIQLPPLSFPRDGPPQFHSSLTATMVCGMCLSGGGNLSPITPKSGYRFGPTPRNLAKVVAIGQPPTDPIAARWENQRDFS
Ga0247525_113444	Ga0247525_1134441	F010305	LKRAEKPHSKSAHRKVPDGPATRPKTPLAVENGVGKLTAPEKGAPNVSMGKR
Ga0247525_113631	Ga0247525_1136311	F007328	MNDVADGLLLDVREISITDLEYADSDSALSRALERILISRPERSFANFNNFIS
Ga0247525_114419	Ga0247525_1144192	F070360	KSRPSPEIPCVICSKPVDLSADLSADENGKAVHTECYVKQITTPQSGPSIAMMTD
Ga0247525_115132	Ga0247525_1151321	F060406	GELNSTTGCRVLRLPQRPTSRFRLRSRPLAALAPNLRLASPASHSSSTGGRLRRLGSTFCRSARTVANLRLSPALRASVRPLADLPTFVGVLPQARPRTNFRFAPDFDPSTRLVSNFRFAPVVVATSACAFCCCGLWLAPVPPVCQTGGEPPTRIGCPSSGFTGFDSLGLRLVLLPPAGLLMHP
Ga0247525_115207	Ga0247525_1152072	F050832	RYRPRPKVMDVVAVDRTSLMKKKKDGPSRAMLRSILLSVLHV
Ga0247525_115366	Ga0247525_1153661	F102319	MIPGPITSWSKNLFRYRTKPMVMDAAAADRTILAKKKKDGPSRAMLRSILLSVLHV
Ga0247525_115411	Ga0247525_1154112	F102319	MIPGPITSWSKSLLRYKSKPKVMDVVAADRTSLMKKKQDGPSRAMLRSILLS
Ga0247525_115962	Ga0247525_1159621	F044295	MAATLVERFDPEGAKTPGGEWRRGEQPDESAGGSATGLKRGSGGDWGKPVPAVERKDRTGAETGRRDSEVAGQDH
Ga0247525_116094	Ga0247525_1160941	F065397	VQVRVFVSTLYSPHKLTLVMAILMTKATTDMRWTEIAPLRRVFMGRWRPLEKTLRPIAEERSLSNGELMDGLRPTFPAVSGFNAEDDNERFASAEC
Ga0247525_116140	Ga0247525_1161401	F001758	RNPSKMKPQGIMAEAGFTSSSGGVRAPSVNAKKGLSGEGRLETVPSRVK
Ga0247525_116423	Ga0247525_1164231	F025423	SSLAHHGHASVLSTAFRNAVRLACLLHGNRFSGHRFNAFRRAAAYLSETGPLARNGLSLARNGSRFHGLHSGVNGPGLPLRYLACRFLRPFGLSAPLPELVCPNSRRFLASDPLHFRRQTHPTALPISTPLREFWLPRDQSVQWASLPSGPPSESARFPLAPRSPFYC
Ga0247525_116439	Ga0247525_1164391	F003050	MESAKAGAVAGEGKAVTSERSSFGMISCGAPESVEAVIAKAVAGEQTGKAYGAPKRGAQYGCMPVVSKAGN
Ga0247525_116569	Ga0247525_1165692	F097372	TIEMSDESIAHTIRNILKQCNSTVISIGHTEGHFLSSKQFAVLEECADTLESLESVAGVDTPTTSAITQASSEEDGFRARRLELARELKQKQIRLTAAPPGDRSQINLEIGKLLSERARLDKLIKQFDAMTIA
Ga0247525_117111	Ga0247525_1171111	F025019	MSLPVLIGFAGVLVAAVATGMLAGRCVRQPRIDFIVWTAVTF
Ga0247525_117350	Ga0247525_1173501	F044777	RRHARHRTLHWKVPCDPPFRSPEFDFSSPGSMLPSSPQSFFPTEPISRNGLSLARNGCSFSEASIPGSMVPACHFKTSRLDLPPGPPSAPLPSLVCPSRGQLHRLSPLRFPRSGSPGCFLHLHSPLGELPPSGSKRSTDSAALRLTFRIRPISLRSPPPFYC
Ga0247525_117988	Ga0247525_1179881	F000565	MNHNLTQGLRGPLARIARRIATIAADCNYGQTRLTSLRNTPERFRPWGS
Ga0247525_118315	Ga0247525_1183151	F018933	ALRPDHVPSCWSQPSLLRRSRITPRSTLDSLYRPRIAPRSVLIDRCCPPIARRSTLNARRRSQIAPRSTLCARAGHGLLHVQHLESSPRVQIAPYSTLCAPRRSQIAPRSTLPARYRSRIAPLSAIDAPCRSTDISVRLHFAPCAVHGLLRAQHFKLRTAHRLLCVRRLHFVPI