Sample 3300023666

Basic Information
IMG/M Taxon OID	3300023666 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0128948 \| Gp0290749 \| Ga0247531
Sample Name	Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRA5 (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRA5 (Metagenome Metatranscriptome)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	26070642
Sequencing Scaffolds	30
Novel Protein Genes	32
Associated Families	28

Dataset Contents

Total Genome Size

26070642

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Riboviria → Orthornavirae → Kitrinoviricota → Alsuviricetes → Martellivirales → Togaviridae → Alphavirus → unclassified Alphavirus → Fusarium sacchari alphavirus-like virus 1	2
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida	1
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → Narnavirus → unclassified Narnavirus → Plasmopara viticola lesion associated narnavirus 22	2
Not Available	22
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Charophyceae → Charales → Characeae → Chara → Chara braunii	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Rhizophoraceae → Rhizophora → Rhizophora mucronata	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → Viruses → Riboviria → Orthornavirae → Kitrinoviricota → Alsuviricetes → Martellivirales → Togaviridae → Alphavirus → unclassified Alphavirus → Fusarium sacchari alphavirus-like virus 1

All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida

All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → Narnavirus → unclassified Narnavirus → Plasmopara viticola lesion associated narnavirus 22

Not Available

All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Charophyceae → Charales → Characeae → Chara → Chara braunii

All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Rhizophoraceae → Rhizophora → Rhizophora mucronata

All Organisms → cellular organisms → Eukaryota → Opisthokonta

Ecosystem Assignment (GOLD)
Name	Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Ecosystem Assignment (GOLD)

Name

Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Type

Environmental

Taxonomy

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

Unclassified

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Czech Republic: South Bohemian Region
Coordinates	Lat. (^o)	49.0448	Long. (^o)	13.618	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

Czech Republic: South Bohemian Region

Coordinates

Lat. (^o)

49.0448

Long. (^o)

13.618

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F002654	Metagenome / Metatranscriptome	539	Y
F003427	Metagenome / Metatranscriptome	487	Y
F007311	Metagenome / Metatranscriptome	353	Y
F009043	Metagenome / Metatranscriptome	324	Y
F010305	Metagenome / Metatranscriptome	305	Y
F012750	Metagenome / Metatranscriptome	277	Y
F014264	Metagenome / Metatranscriptome	264	Y
F016398	Metagenome / Metatranscriptome	247	Y
F023797	Metagenome / Metatranscriptome	208	Y
F024792	Metagenome / Metatranscriptome	204	Y
F024793	Metagenome / Metatranscriptome	204	Y
F028981	Metagenome / Metatranscriptome	189	Y
F030305	Metagenome / Metatranscriptome	185	N
F030619	Metagenome / Metatranscriptome	184	Y
F049826	Metagenome / Metatranscriptome	146	Y
F050832	Metagenome / Metatranscriptome	144	Y
F059150	Metagenome / Metatranscriptome	134	Y
F060406	Metagenome / Metatranscriptome	133	N
F062493	Metagenome / Metatranscriptome	130	Y
F066510	Metagenome / Metatranscriptome	126	Y
F067447	Metagenome / Metatranscriptome	125	N
F068861	Metagenome / Metatranscriptome	124	Y
F072941	Metagenome / Metatranscriptome	120	N
F089697	Metagenome / Metatranscriptome	108	N
F097372	Metagenome / Metatranscriptome	104	N
F100551	Metagenome / Metatranscriptome	102	Y
F102578	Metagenome / Metatranscriptome	101	Y
F106076	Metagenome / Metatranscriptome	100	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0247531_100013	All Organisms → Viruses → Riboviria → Orthornavirae → Kitrinoviricota → Alsuviricetes → Martellivirales → Togaviridae → Alphavirus → unclassified Alphavirus → Fusarium sacchari alphavirus-like virus 1	6913	Open in IMG/M
Ga0247531_100079	All Organisms → Viruses → Riboviria → Orthornavirae → Kitrinoviricota → Alsuviricetes → Martellivirales → Togaviridae → Alphavirus → unclassified Alphavirus → Fusarium sacchari alphavirus-like virus 1	4218	Open in IMG/M
Ga0247531_100807	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida	2436	Open in IMG/M
Ga0247531_101260	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → Narnavirus → unclassified Narnavirus → Plasmopara viticola lesion associated narnavirus 22	2145	Open in IMG/M
Ga0247531_101418	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → Narnavirus → unclassified Narnavirus → Plasmopara viticola lesion associated narnavirus 22	2070	Open in IMG/M
Ga0247531_102893	Not Available	1612	Open in IMG/M
Ga0247531_108769	Not Available	851	Open in IMG/M
Ga0247531_109444	Not Available	809	Open in IMG/M
Ga0247531_109550	Not Available	802	Open in IMG/M
Ga0247531_109689	Not Available	793	Open in IMG/M
Ga0247531_109891	Not Available	782	Open in IMG/M
Ga0247531_110711	Not Available	737	Open in IMG/M
Ga0247531_111065	Not Available	719	Open in IMG/M
Ga0247531_111958	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Charophyceae → Charales → Characeae → Chara → Chara braunii	677	Open in IMG/M
Ga0247531_111994	Not Available	675	Open in IMG/M
Ga0247531_112148	Not Available	669	Open in IMG/M
Ga0247531_112296	Not Available	662	Open in IMG/M
Ga0247531_113942	Not Available	603	Open in IMG/M
Ga0247531_114426	Not Available	588	Open in IMG/M
Ga0247531_114861	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Rhizophoraceae → Rhizophora → Rhizophora mucronata	575	Open in IMG/M
Ga0247531_114870	Not Available	575	Open in IMG/M
Ga0247531_114888	Not Available	574	Open in IMG/M
Ga0247531_114896	Not Available	574	Open in IMG/M
Ga0247531_115273	Not Available	564	Open in IMG/M
Ga0247531_115352	Not Available	562	Open in IMG/M
Ga0247531_115757	Not Available	550	Open in IMG/M
Ga0247531_115885	Not Available	547	Open in IMG/M
Ga0247531_116448	Not Available	533	Open in IMG/M
Ga0247531_116761	All Organisms → cellular organisms → Eukaryota → Opisthokonta	526	Open in IMG/M
Ga0247531_117367	Not Available	513	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0247531_100013	Ga0247531_1000132	F097372	MSSESIAHTIRNILEQCNSTTISIGHTEGHFLSSKQFAVLEECADTLESLESVAGIDTPSSSAITQASTEEDGVRSRRLQLAREIKQKQIQLTAASPGNRSQINLDIGKLLSERAKLDKLIKQFDTTTIV
Ga0247531_100079	Ga0247531_1000794	F068861	LINLLSNLIPQQLFDMPSLTSTRLIAEYGSDQDYKFAGAIQVKTATTLTTTFGAVMRYEPWTNAGAKELLKHHPIGVWKELSVRLAPRPGIYGRMCTFYGGWAAAGVVTPTTAEEMVALHGAIDVTYGGTGDPGTVKVQIPCEFDDTMKDLLKGPDNDNSRPVFFYAFTETDVVDKPANSDRFMLTFKGKYTLHGRY
Ga0247531_100807	Ga0247531_1008072	F007311	HVPSCWPPHFAVAPVTDYSMLDALRSPLRSDCSALRFLRPVPASDLTRRPTLSTPRLVQIAPHSTLCARAVHGSPRATDCSVVQHLELCPACGSLRPRWLTFHDALGLLLAHRFPPYGVPGLLRDRRVTLHAGLRIAPYSDALRPWPVHGFLRARS
Ga0247531_101260	Ga0247531_1012601	F030619	MSPLQQVWTTCWSGLVLSGWDSLRVAWFLHSWVAKTVPSRGVAFTVKELKSLCHNVRGSALHSKRWKNVPCNIRKDVVDTLCHLAVRRPEDGFAFTRLSRSLPEPPLRECVKHLQAAKLIASTEFPTSTATLDSLRSFVALTPGVSGSGVLRHPRRLPSSSSSCLEWPATRGGIDGYLEHLGHMCEEAGATQSSFHAYAGDSLGAFCLRKASVVLRPCAGVAADLRESYRCAGLLYLRSQGKPFGMKATALRTPGYKVRVVGVPDCLTFVEGSWVRSSLRWLAPGHWRIDGESRKIPGGLHYRAGRRFASLDLSKATDGLSHAAIRVVIEGLAARGLIRPADLTMSLRSLGLERGATWSFPDLGDKVGEGSFLRGSPMGTPLSFVVLSWVNAWATKAFSQAITHGDDAVGRYRPGSGELSLYASRVSSVGASLNREKTFMADHSWTACEILALPREYNEDRMSLFFPPSIPPPALRAPVEADQRLENLWLRRMERIMKSRFPWIVKDPRLHLPVQVGGLGYTGRGLAVGVSVRCRLGALVSRGPSAVIAADLIGKKPFREVGLYPRPLCRVVRPGSYWKAVRATEQWFQAGGDTHVPLESLLSFKSCLIEDEIRLLEGDKFKRKRVAGRPDRTRKGAVFRRLGVALCRPLSRRWGCSALIRWALLSRESKVTVPEDI
Ga0247531_101418	Ga0247531_1014181	F030619	GLVLSGWDSLRVAWHLHSWVVKTVPSRGVAFTVKELKVLCHNVRGSALHSKRWKNAPCNIRKNVVDTLCHLAVRQPENGFAFTRLSRSLPEPPQRECVRHLQAAKLMASAEFPTSVAALDSLRSFVALTPGVSGNGVLRHPRRLPSSSSSCLEWPATRGGIDGYLEHLGHMCEEAGATQSSFHAYAGDSLGAFCLRKASVVLRPCAGVAADLRESYRCAGLLYLRSQGKPFGMKATALRTPGYKVRVVGVPDCLTFVEGSWVRSSLRWLAPGHWRIDGESRKIPGGLHYRAGRRFASLDLSKATDGLSHPAVRVVIEGLALRGLIRLADLAMSMRSLGLERGATWSFPDLGDKIGEGSFLRGSPMGTPLSFVVLSWVNAWATSTFSRALTHGDDAVGRYTPGSLELDLYASRVASVGAALNREKTFKADHAWTACEIFALPRSHGEDKMTLFYPPSIPPPTLRAPVEADQRLENLWLRRMERVMKSRFPWIVKDPRLHLPVQVGGLGYTGRGLAVGVSVRRRLGALVSRGPSAVIAADLIGKKPFREVGLYPRPLCRVVRPGSYWKAVRATEQWFQAGGDTHVPLESLLSFKSCLIEDEVRLLEGDKFKRKRVAGRPDRTRAGAVFRRLGVAPCRPLTRRWGCSALIRWASLSRESEVTVPEDIASEIRERIPDPT
Ga0247531_102893	Ga0247531_1028931	F097372	TIGMSDNSIAHTIRNILAQCNSTTISIGHTEGHFLSSKQFAVLEECVDTLESLESVAGIDTPSSSTTTQASAEEDGVRSRRLQLAREIKQKQIQLTAASPGNRSQINLDIGKLLSERAKLDKLIKQFDAATIV
Ga0247531_102893	Ga0247531_1028932	F068861	MPSLTSTRLIAEYGSDQDYKFAGAVQVKTATTLTTTFGAVMRYEPWTNAGAKELLKHHPIGVWKELSVRLAPRPGIYGRMCTFYGGWAAAGVVTPTTAEPLVALHGAIDVTYGGTGDPGTVKVQIPCEFDDTMKDLLKGPDNDNSRPVFFYAFTETDVVDKPANSDRFMLTFKGKYTLHGRY
Ga0247531_108769	Ga0247531_1087691	F030305	LQFIGSCIVPFGFLVPVPSFLFPALSDLARRCSSGRPVPRVSDRTGDEASSCPDSSVFSAVPADGSSSRPDSRILQLGYPQIARLPRLSTSCLAVDERPGCPDRSIIWLYRRRRFRVAPNLTSFGGTVSNSPSRPGSSLLQPLPLMVLRVAPGAPSSGFAGGDSSGCPEALIPRLCRLVALRVSPNLPPSDICRFRSSGLPQIGFLGGSMMNPRFARTLHPRSIQLTSLQVAPKLPLPAAPRMNLQTHSGLAFLPTLRCSLNLYPLFACRRTGLLRTTINQFP
Ga0247531_109444	Ga0247531_1094441	F010305	LKRAEKPHSKFSDRKALDGPATRPKTPLAVENGVGKLTAPEKGAPNVSMGKRDWRAPI
Ga0247531_109550	Ga0247531_1095501	F067447	RVAGPNPPHFAPRKNYFLLDTYTKRYTRIAPWLTLSACAGRGLLRAQHFSALPRSRIAPRSTLGFQRLTRIAPCPALPALMLNPDCSVFSTCRSVPCTDCSALVPSRSAPATNYFVLDTWPFRPAPGCLRALDVLPCAVYRSLGVQHLALAPVTNYFVLDAWPSVQRPDASVLSTSRPALPADCSALTALRCASYGLLHAWHLALAPVKDYSSLDT
Ga0247531_109689	Ga0247531_1096891	F003427	VADPELTVKTRIRSHKRVFTWFASRRPQTPAEASLEASLEIQRPQGAGRPCYEAETTPLAVENGVGKLAAFVRQMPAWERECVEL
Ga0247531_109891	Ga0247531_1098911	F024793	VNSASPELSLWFQRSRINQPDPAFPRSPGIILKLDN
Ga0247531_110711	Ga0247531_1107111	F023797	MLGKPLMLSPLSIRCSGAARVDTIPLLDRTSHRPAVRRMSLPMSLESSFPQLAPQAIFRLLSNLSSSCVAGNVHF
Ga0247531_111065	Ga0247531_1110651	F100551	MRLELNFSPAVQQVTGLFHLPLAFCLQPEPLAVCFVSMDRPVSCQAFNLASSVCRILTLR
Ga0247531_111065	Ga0247531_1110652	F023797	MLGKPLMLSPLSIRRFSAARVDTIPLLDRTAHRPAVRRMSLPMSLESSLPQLAPQAIFRLLSNLSSSCVAGNVHF
Ga0247531_111958	Ga0247531_1119581	F012750	MEASEREQPLQARERPLRKTGSIEETDCGGPEGVDPEGEKSNLGERNGETPGATQCGALYRACRWRARLEI
Ga0247531_111994	Ga0247531_1119942	F089697	RSTVGAASSGYPSGRPPAFAGAATIGCAGFQNSDLRRRPALQLDRWPTFRLGSASCPSARPAANFRLASNVPLFRSSFGDPSGLRLTILVSPGLRPTILVPSGLRRMALPPARPTTYLRFASMPSFDSAGGFIRLAPCAAPAPRLAPLPVCTGGFTFRLDRP
Ga0247531_112148	Ga0247531_1121481	F049826	DFGYALATDSCEGADSVDACTVTALGAITAFAVPDPG
Ga0247531_112296	Ga0247531_1122961	F024792	ERLGQAGWLNPSKTVPKGRVTGGRIHQFLWRRSHAVSDAKQELSGKGRIEAVPSRVK
Ga0247531_113942	Ga0247531_1139421	F050832	MVMDAAAADRTILAKKKKDGPSRAMFRSILLSVLHV
Ga0247531_114426	Ga0247531_1144261	F066510	MGSGALIRSRVKAAAGSKGTASQLHCMLSSDCACQSENGLLDGSL
Ga0247531_114861	Ga0247531_1148611	F002654	MNNQTYNDKVVCLKGNSPEQELIKVPKLLLSENKEVFVVYN
Ga0247531_114870	Ga0247531_1148701	F009043	SDLISQLNSPPACTALSFATRIAGCCPVGSPPPSFESNGSMLPGSPASFPGWNRYLEAAFHSPKTTVRLRTAISRSKFPTYSFAALPSVHQARSVSDSPTRSGSPRHAQDQYQKPVAQLPSSSPNRSSDLHSPLGPFGPFRIKAFNPIPGREAHLPNTPDCLSLPGSGSILLVPMPDHRSKLASRSAVCCS
Ga0247531_114888	Ga0247531_1148881	F014264	AGSSGSGTMIRRANVIRDYFGRGGERGKIGRLVRVSFSVWKKAEHYNPEGSRGPDGE
Ga0247531_114896	Ga0247531_1148961	F062493	VCRKALIPGQRNRPRGSGTAKHPELLNAVFYAEHAGREQGWELD
Ga0247531_115273	Ga0247531_1152733	F072941	SPIMINITLEEIQFISIRLLARVHFGCDEWMAFKGD
Ga0247531_115352	Ga0247531_1153521	F059150	RAERKRSEPGTLIRGATYSNRARNGERKDIGRFREVNLSTGNQVEALIPKGAKGPEGEPRSGG
Ga0247531_115757	Ga0247531_1157571	F102578	VATTRRTLKSVAGEWQTPNPDRPSADRTPSMPVVRSIV
Ga0247531_115885	Ga0247531_1158851	F016398	MEASEREQPLRARERPLRATGSVEERDAVRSGGIDPGAEKSALEERNDEALSAS
Ga0247531_116448	Ga0247531_1164481	F060406	CRVLRLPQRPTSRFRLRSRPLAALALNLRLASPASHSSSTGGRLRRLGSTFCRSARTVANLRLSPALRASVRPLADLPTFVGVLPQARPRTNFRFAPDFDPSTRLVSNFRFAPVVVATSACAFCCCGLWLAPVPPVCQTGGELPTRIGCSSSGFTGFDSLGLRLVVLLPAGLLMHP
Ga0247531_116761	Ga0247531_1167611	F106076	VNTIAKITVASRPYKAPLLLPXIKEXXAYVTVTPDDNKITVLSKGNSKGLIASIPIGGHWAPNSTVGDKALXKKAQNMAKKNNASLTINKATPMFNPLCTANVXFPRYVPSLITSRHHNVIEEMRDKKANIKNVFALLKPCIVNTPLVVNVSKAIHVYKGHGEGETKXKGWAXKL
Ga0247531_117367	Ga0247531_1173671	F028981	LFALSLCQTTPCYNNGNCFGATSTRCDITKVQLDAGTTGQCTAGFTEGQTCVNDNDCNAADNLICTKGRCVYGTPYGFNCSDNFFCNSQLYSRCVNGTCVEGGATGASCQVNTDCSQISSSKWCLGSTCRVQSNFPCDNTNQCYGNNWICKQVGNEAIKACTYSP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300023666: Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRA5 (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences