Sample 3300023549

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300023549

3300023549: Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 63R (Metagenome Metatranscriptome)

Overview

Basic Information
IMG/M Taxon OID	3300023549 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0132854 \| Gp0267193 \| Ga0232116
Sample Name	Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 63R (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	5684311
Sequencing Scaffolds	12
Novel Protein Genes	15
Associated Families	14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	6
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata	1
All Organisms → cellular organisms → Eukaryota → Sar	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Oxyrrhinales → Oxyrrhinaceae → Oxyrrhis → Oxyrrhis marina	1
All Organisms → cellular organisms → Eukaryota	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Seawater Microbial Communities From Monterey Bay, California, United States
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → coastal water body → coastal sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	USA: California
Coordinates	Lat. (^o)	36.8313	Long. (^o)	-121.9047	Alt. (m)	N/A	Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000462	Metagenome / Metatranscriptome	1107	Y
F001293	Metagenome / Metatranscriptome	729	Y
F001926	Metagenome / Metatranscriptome	616	Y
F004023	Metagenome / Metatranscriptome	456	Y
F018735	Metagenome / Metatranscriptome	233	Y
F030105	Metagenome / Metatranscriptome	186	Y
F040511	Metatranscriptome	161	Y
F046404	Metagenome / Metatranscriptome	151	Y
F052632	Metagenome / Metatranscriptome	142	Y
F061888	Metatranscriptome	131	Y
F067105	Metagenome / Metatranscriptome	126	Y
F070574	Metagenome / Metatranscriptome	123	N
F074949	Metatranscriptome	119	Y
F093205	Metatranscriptome	106	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0232116_101161	Not Available	751	Open in IMG/M
Ga0232116_101773	Not Available	636	Open in IMG/M
Ga0232116_101886	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	621	Open in IMG/M
Ga0232116_101926	Not Available	616	Open in IMG/M
Ga0232116_102022	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata	604	Open in IMG/M
Ga0232116_102204	Not Available	584	Open in IMG/M
Ga0232116_102660	Not Available	542	Open in IMG/M
Ga0232116_102682	All Organisms → cellular organisms → Eukaryota → Sar	541	Open in IMG/M
Ga0232116_102824	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Oxyrrhinales → Oxyrrhinaceae → Oxyrrhis → Oxyrrhis marina	531	Open in IMG/M
Ga0232116_102948	Not Available	522	Open in IMG/M
Ga0232116_103005	All Organisms → cellular organisms → Eukaryota	518	Open in IMG/M
Ga0232116_103259	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	500	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0232116_100439	Ga0232116_1004391	F018735	LDKRKTLNAACDASRSKYAERDAHCDEEQEQYEQSFCPHRQGFHSTCAEYQGCHILNEEQFKALIQDVLYAADSRKIDWKAIHKIACYIKVLVSDGTNQERTWALENCESGDLNTLATILTGFNESNYLSLIIPEISGNVSCWDLDVPPLIDFKECDMSSVHQYPCTETWMNRYQGLESPSNCVQCAALPEHMQYSDKDYQQSTHARNTEYGGGWIFVNELGRSTEDINDLSEIQPEGYFLPQYNMKGLRWNEVLVQRVSPNWCDSWGRQSSKWVEDDGASMCVQSDNDHVYCMSNHEGHTWRQQPTSHFAALCGKEGQPACDCWPFEEGLEHVCFAHDAASTSVHAAKNVPA
Ga0232116_100527	Ga0232116_1005271	F000462	EKIDVLKADIQKAIATAAQLGKEIAAHDEDISVWNGDIKAASKVRSLEKADYDALHKDYSESVDALQRAIAVLKKQAYDRKQASSLMQVSALKQLSLIPQEAKKMIDAFLSTGEEPTEGLAVSAPEAYGYEFQSHGVIEMLEKLLDKFIDERTVLEKEEMNTKHAFEMLIQDLDAQIEQATQDRTEKAALKAKTLQAKADAEGDLVDTTGTRDADMKYLADLTATCEQKASDFEARQELRAEEIVAIEKAIEIISSNAVSGNADKHLPSLIQKSALAQLRADGRSANQQRVAAYLQQQAKSLNSRVLSAIAQRVSDDPFKKVKKMIKDLIV
Ga0232116_101161	Ga0232116_1011611	F067105	EPTSAPVENTTPVETTVETPAVQVETAAPVEAPKATNQEELMKLVIDQENELSGTKSALEKAHAELMKLQNAWKEREDNEKLQTKSKAEALSKALVDSWSASLPADMMTDENKKAIFALAQNFPQESVKMMEIAHKASKKYKSDMDSFAAQQQAKEKRHLESRVMDIVTKKRRIVPDTTSVVHAASVKKARVANPFSFDASKTSSSMNSVRDRNPQLFSALSGFSTGNLRDRMGQIAKINGNN
Ga0232116_101773	Ga0232116_1017731	F070574	MRNIIMTAALMVALTGTAQAENYDNTTVSMAAESATMGISLSTNDTSRSIDVYTMGRSLDFGAGVSDNGTNRDYSVSVGKTLDVLNVGPVGTYLSGEAEYNWGDTFTKSEMHFTPTVGGKMDLGLIAPYAEVDYMLKSVEGDFTSIDKATPNFTIGTKVALGTSTSLN
Ga0232116_101886	Ga0232116_1018861	F052632	MLINGVNLMHHLNRCRLKLQKHTLEEKQLRSPNLLMQPKNSVEA
Ga0232116_101926	Ga0232116_1019261	F030105	FIVCVFLCPVLPTMSMVRVLATSSTVAVALNATNTPSCGVNQKVSGGEVVSLSDGTYDRCISVITPTSAVKPMPVLFWFHGAGGNAAHCGPDDLVEAAEKHGFALVCGEATQNVFGSGGEWDIPAKITDESGTPCDNSDSVEVGYWKSILNHLKQSPEIYDAQKLFTSGCSMGSAFSGYSANCLKHWDSQQISAFATHSTGLKYK
Ga0232116_102022	Ga0232116_1020221	F004023	KSGIFTFLIFQVVVFLGLVLCCTHLSDITLTIAANILHTFFAFKGKAYWXLFTDKQLNTDTIIRLAYAHYVAAFFMFYLAILHGVDMHHDXKNEYAYDGIETELSXFDEALSSELAGTIDVLLIVGFFCYLXFPEPEALTYEIFMXGDIGFVTDVRFYGVAPHXYFRPFMAXLIACPHHKTGIFGFAVFFGALFYQPVIN
Ga0232116_102204	Ga0232116_1022041	F074949	ISSYCFDTKSMKFGIATLSGLAAAALVEDDVVLLSTASVRSSVGAESSLGGLIAFAQEDHPRKASQLLQQFAKNTLNRGEEVDDITKQKLKEIVAQLTNNTWMALEQSHRRDQDLINKHWRAIQICGDKHIAHLQQDVDGLEVQQVRTHEMDMIMCRGLPNHTNPFASLLQNKAQPDVVNGHVNTQQDGINYVP
Ga0232116_102660	Ga0232116_1026601	F018735	MSSVTHYPCGPTWMQRYEGLESPSHCRECSALPEHMQYSDKDYQDVDHARNTDYGGGWIFVNELGRSAQDINDLSEIQPQGYFLPSYNMKGLRWNEVLVQRVSPNWCDSWGRQSSSWVEDDGASMCVQSDNDHVYCMSNHEGHTWRQQPTSHFAALCGKEGQPACECWPFE
Ga0232116_102682	Ga0232116_1026821	F001926	LRFRIVTQKLRDVRHEDIPDINNPKIRFPVLEGDKLMKEVLNGGYNVHPVPPPKSEIKERIRKRYERKRIKIEKLLTLGYTTSGDP
Ga0232116_102824	Ga0232116_1028241	F061888	MTLNPFVYGSASSLKCFDEAAPCTLEQESMNVIANNPQDKYVPWLVCMDSKGDQLDTCDTQAGVSKPASSAPADLLDQYLKVDSPIQGTPTVYVDGKNVKTSYSAIKKALCKADSSLKACASNFMPEG
Ga0232116_102948	Ga0232116_1029482	F040511	SKCCLTEPSSSDGGSGPSETLAPSQGTFWNTFTYKGEVDFNGVYYQGKAKYYVLTGVNEPVREFWYFTDLDGKPVQQGEAGTGPTDQGYPVSIGHTIWHDYNPASLNSAAFDTSVFDVPEVCKTTTLTCAFP
Ga0232116_103005	Ga0232116_1030051	F093205	VVFRVTMAPRALFSSLLIGASANQCPGSGSLIHAKMQVTSTASASCADVQAEIEARAQGENGWVDPHNNGVYSLLGSDNGVIQTQRTTNPATSVGGQVYTDKQTFALSDVDGGCQVMGCSESQGTSVGDFSTNYCDLRNLFCGSADGCKTVSKDFSHSETSHHGSIGAGHDA
Ga0232116_103259	Ga0232116_1032591	F001293	MIPNSFICKLINVQAREKENNEKKIRNEDEISKLTKAPPKDTAALDKRSVLAKVNSQESG
Ga0232116_103259	Ga0232116_1032592	F046404	MEKMMNEKMPKRRIQIRELQKQEIEEKQERGLLIRFQISSVILLINL

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