3300023313: Hydrothermal Fe-rich mat microbial community from Urashima Vent Field, Mariana Arc, Pacific Ocean - 801-BM1-B4

Overview

Basic Information

• IMG/M Taxon OID: 3300023313
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133538 | Gp0295817 | Ga0256748
• Sample Name: Hydrothermal Fe-rich mat microbial community from Urashima Vent Field, Mariana Arc, Pacific Ocean - 801-BM1-B4
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Delaware
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 224728852
• Sequencing Scaffolds: 12
• Novel Protein Genes: 15
• Associated Families: 15

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	6
All Organisms → Viruses	1
All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1
All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium TMED8	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Hydrothermal Fe-Rich Mat Reference Genomes
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Fe-Rich Mat → Hydrothermal Fe-Rich Mat Reference Genomes

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine hydrothermal vent biome → marine hydrothermal vent → microbial mat material
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Surface (saline)

Location Information

• Location: International: Urashima Vent Field, Mariana Arc
• Coordinates
  • Lat. (^o): 12.92235
  • Long. (^o): 143.64925
  • Alt. (m): N/A
  • Depth (m): 2929.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002232	Metagenome / Metatranscriptome	580	Y
F002874	Metagenome / Metatranscriptome	524	Y
F002963	Metagenome / Metatranscriptome	517	Y
F003161	Metagenome	504	N
F004658	Metagenome	429	Y
F005883	Metagenome / Metatranscriptome	387	Y
F011673	Metagenome	288	Y
F013646	Metagenome / Metatranscriptome	269	N
F015419	Metagenome / Metatranscriptome	255	Y
F028523	Metagenome / Metatranscriptome	191	Y
F059000	Metagenome	134	Y
F083241	Metagenome	113	N
F083246	Metagenome	113	N
F088723	Metagenome	109	N
F088984	Metagenome / Metatranscriptome	109	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0256748_1069817	Not Available	978
Ga0256748_1089243	Not Available	867
Ga0256748_1093791	Not Available	846
Ga0256748_1113258	All Organisms → Viruses	771
Ga0256748_1117659	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	757
Ga0256748_1132462	Not Available	715
Ga0256748_1132618	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	714
Ga0256748_1136928	All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage	703
Ga0256748_1154492	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	665
Ga0256748_1162423	Not Available	650
Ga0256748_1174478	Not Available	629
Ga0256748_1174922	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium TMED8	628

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0256748_1002974	Ga0256748_10029743	F088984	MVTPDARSTAVFRRGTANGLRGWMPVGGQEHPSSGVGARLLWKKAQKKARKNITSDTINRIIPHRRPEMT
Ga0256748_1069817	Ga0256748_10698173	F005883	MNALKKAKKFGTSGIVFRRGQQIVLENEKTTEHVVVKVVQHDSIQGWLAENGEGDWQWYREHKQEHDAKETEYWKYIKKAGT
Ga0256748_1089243	Ga0256748_10892433	F004658	MPVHPHVSGGLQKIYDFFKANNAAKDVLIGAVSFIAGGFVLDRILRRDKDEDEDE
Ga0256748_1093791	Ga0256748_10937913	F002963	MNYNLVLYIGLFLIVGGFCLFLYSQMRLRQLDIEQWKNEQLTKSFNKAKEMENK
Ga0256748_1093791	Ga0256748_10937914	F011673	MKVLPIYLQPRILSAVSYIHVAPNKEIGLERINKVMKELSEREMKYVLSLLVFDKLLDLVADSDEFKNHVSTMKERTIH
Ga0256748_1113258	Ga0256748_11132583	F083246	TVQGDRRIKLESKDDFKKRSSGSPDDADALARCYAAPGPGVGVW
Ga0256748_1117659	Ga0256748_11176591	F015419	GNKQQYTINPNCGDKTKNLDNFILECLSISEDKRKLPLITLCPNNLEVYPSIKMKFENYGSPLLGNKLEAIMITWRD
Ga0256748_1132462	Ga0256748_11324622	F003161	LSRSGALDRIDVLLSTITDPAFVAVIRAEPLALSGTPVLAYWVQARTNGWQTLSDIGSTTTIMVRAYFRLQASADVRESIELELWDAMVEVDTKLRSDANLDGNCTDSTVGSATVATLDMGGALYRTATITFDIQIYEEVTITP
Ga0256748_1132618	Ga0256748_11326181	F013646	INTRTQQADDITITGGNEITGLYTVVSGAVATASEHDFGFSEFVSPDFDTSMPYRVAVQPTFTGLGAAANAVTGGGGIMQYNMPRGQGIPLADKVTITTYFTNRDARAAGASNFINFVRYTK
Ga0256748_1132618	Ga0256748_11326182	F028523	MPHLNGELQPSQVKSLAVYDVASYGTDLFLPLTDVGLTETALTFSGVTMTRDTSDSNQPLDSFPRVYSDTDSGLLLNEGSNTVYNQTYTLDPDMTAVIYKLSLNFCAVLTC
Ga0256748_1136928	Ga0256748_11369281	F059000	PRMLLRSRYAIGELGWYPQKQYMTVHVADPDQILI
Ga0256748_1154492	Ga0256748_11544922	F083241	MTPWAMLQYVDIVEPVGDAFADWEVFYAGWENQAAKLMPVEYQEEYKMRYWMAGAPTPGFFMQISTPTFSPDATSVPAPVSFELFTTGRRSIDVRTA
Ga0256748_1162423	Ga0256748_11624231	F002874	LVRRNKNNIVSGLERPKNIMRDRSLSPIIFMKEKVDLSLNRSLPELESSYWEFIEATEGEDSTECSSSVQEDISALEGYLMKMDIL
Ga0256748_1174478	Ga0256748_11744781	F002232	MNKIAKKLRKLKDQLDKIEEKEDEILSQIDETIDELEENNSDD
Ga0256748_1174922	Ga0256748_11749221	F088723	GGRRLLESRKSGILSDFELDDMGNVAYRAGYRGHRRFMPDKTVSEVNDEMARALGESVPSSRPNPAERPYEFQFFEESPFVALGERWSRQNRALQRKWFIDEITDNFRATGPMLTNTLIQNARNTLLSKGVPEYELTWDIVRKQAESMAPVKAEMGIGKWVKRDPEGGEGQFVERYINPDDVGDKYLWRKADDADIADNYIEVKGLPNQ