3300022932: Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L074-202C-1

Overview

Basic Information

• IMG/M Taxon OID: 3300022932
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0095510 | Gp0290977 | Ga0247807
• Sample Name: Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L074-202C-1
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 850068750
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → agricultural field → plant litter
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.3
  • Long. (^o): -89.38
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003605	Metagenome / Metatranscriptome	477	Y
F004023	Metagenome / Metatranscriptome	456	Y
F051903	Metagenome / Metatranscriptome	143	Y
F061214	Metagenome / Metatranscriptome	132	Y
F085909	Metagenome	111	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0247807_10000498	Not Available	24331
Ga0247807_10027960	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya	2355
Ga0247807_10128121	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria	1034
Ga0247807_10188365	Not Available	838
Ga0247807_10249979	All Organisms → cellular organisms → Bacteria	714
Ga0247807_10430309	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata	521

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0247807_10000498	Ga0247807_100004983	F003605	MAVGDDATAAGYPLVPNTGEEGRVRFGAREINRTRDLIAGVRGLIPIGKAGYRSAAGITTSAVDPVNTDGQDGDIHIKTLA
Ga0247807_10027960	Ga0247807_100279601	F061214	VISARCRLVNGFAKLTNISLALKETPINGGLTYEGPKVAEYPG
Ga0247807_10128121	Ga0247807_101281211	F051903	MCEEIATVRRKFQRIGTRRILVLDETHRRIGDVTERTIVLPGEPSTIETSATTHYAPRYDMIACCTSKEVMPPMIYAPKERGKGVDTEMLLQYIRNLLAQSAGALDRYPLFLMLDKSTIHNEGKIIETFHDWGCQELVEVIKMPTAAAKRLSPLDNSLFNVWRQRALNGPPLTRTNIKQRMSDAWNSITEQDLLPQYRHCGLMRRQDVYFDCPNPAAHRHRS
Ga0247807_10188365	Ga0247807_101883651	F051903	AEVRRKVQRVGKDKVLFLDETHKRVGDATTNTIVLPGEPSFIQSDETSKYAPRFDMIACCSGKEVLPPIIYAPKEGGKGINAAMLHEYIRQLLGQAAGALDRYPLILVLDRATIHSEEKMLQEFHDWGCQELKEIVKMPTAAAKRLSPLDNSLFNVWRRRVLEGPPLTQADIKQRMSDAWNSITAADLNAQYHNCGLFRGEDVYFDCPNPAVHRHSS
Ga0247807_10249979	Ga0247807_102499791	F085909	MAVDEVELNALAQASKQSRAVSGKDRLYKEFVLVDQSQICQSQ
Ga0247807_10430309	Ga0247807_104303091	F004023	QVVTFFGLVLCCTHLSEITLTIAANVVHTLFLFHGKFYWXIFTDKNLNTDTLIRLAYAHYLSAFYMAYLGLLHGIDMHYDXKNESIYDGLEPEMSWXDEALSNELGTFIEAVFVLNIICWXMYPEPEALSYEIFMXGDIGLIPDVRFYGVAPHXYFRPFMAWLIVCPHHKTGI