3300022924: Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L089-202R-1

Overview

Basic Information

• IMG/M Taxon OID: 3300022924
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0095510 | Gp0290978 | Ga0247808
• Sample Name: Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L089-202R-1
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 772826163
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → agricultural field → plant litter
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.3
  • Long. (^o): -89.38
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007527	Metagenome / Metatranscriptome	349	Y
F044050	Metagenome	155	Y
F049431	Metagenome / Metatranscriptome	146	N
F051903	Metagenome / Metatranscriptome	143	Y
F065185	Metagenome	128	Y
F088701	Metagenome / Metatranscriptome	109	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0247808_10031213	Not Available	2566
Ga0247808_10034142	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	2435
Ga0247808_10060645	Not Available	1733
Ga0247808_10103105	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1236
Ga0247808_10186332	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria	837
Ga0247808_10366509	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	534

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0247808_10031213	Ga0247808_100312131	F007527	VIAWCAHVTVAPEVNNIIVFNKGTSHGLKAWIACGGQIDPISIVGAKLEXKNAQKKAKKNIISDTINKIIPYLKPVCTAL
Ga0247808_10034142	Ga0247808_100341422	F049431	MTTGRINQVTILSPSAEAREQTPRGRPGCTGRKGRRRSEPQPQASEVCETPKPQATDSIAPTEFPKLRSATGGIRLLHRSLHRYIRPSGGEDSRQVNAQARVLDRAIPEDLVKRLAKPVIHRPQMLPANRETNRTSVPSTSTLRLPEGRQHRASRKESPSPK
Ga0247808_10060645	Ga0247808_100606452	F088701	MWKTFVVAVVLKRPEKIPIPLFKNRKNKLSYAIKAEISKIVIVALEHNIDLSRLSVIELDKSKMINDIINT
Ga0247808_10103105	Ga0247808_101031052	F044050	MKKSVTKPTDLLDGELDFSKLGPVRRNAFAGAGQRGGPSLLALWEMPQVAASTMMLRRGRPARGEVRKTVTKSIRLPAAIWEQVEQRAHDKHLNLHQAMRSALLDWLKQAG
Ga0247808_10186332	Ga0247808_101863321	F051903	RPLKLRACACLFSVSAEMCEEIATVRRKFQRIGTRRILVLDETHRRIGDVTERTIVLPGEPSTIETSATTHYAPRYDMIACCTSKEVMPPMIYAPKERGKGIDTEMLLQYIRNLLAQSAGALDRYPLFLMLDKSTIHNEGKIIETFHDWGCQELVEVIKMPTAAAKRLSPLDNSLFNVWRQRALNGPPLTRTNIKQRMSDAWNSITERDLLPQYRHCGLMRHQDVYFDCPNPATHRHGS
Ga0247808_10366509	Ga0247808_103665092	F065185	MKITFEDTSYIECKKSDTPGKILIIIQAKDAANPLKRISNAIEMSVEEFKQLISEV