3300022745: Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 1-17_Aug_MG

Overview

Basic Information

• IMG/M Taxon OID: 3300022745
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0131212 | Gp0267122 | Ga0228698
• Sample Name: Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 1-17_Aug_MG
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 350912595
• Sequencing Scaffolds: 29
• Novel Protein Genes: 33
• Associated Families: 28

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	4
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	3
Not Available	7
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	3
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida	1
All Organisms → Viruses	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Mammalia → Theria → Eutheria → Boreoeutheria → Laurasiatheria → Artiodactyla → Ruminantia → Pecora	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	4
All Organisms → Viruses → Varidnaviria → Bamfordvirae → Preplasmiviricota → Tectiliviricetes → Kalamavirales → Tectiviridae → Deltatectivirus	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Vibrio phage 1.187.O._10N.286.49.F1	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Mammalia → Theria → Eutheria → Boreoeutheria → Laurasiatheria → Artiodactyla → Ruminantia → Pecora → Bovidae → Bovinae → Bos → Bos grunniens	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater biome → bayou → fresh water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: USA: Georgia
• Coordinates
  • Lat. (^o): 33.9406
  • Long. (^o): -83.5607
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001445	Metagenome	692	Y
F002002	Metagenome / Metatranscriptome	605	Y
F002031	Metagenome / Metatranscriptome	601	Y
F004727	Metagenome / Metatranscriptome	426	Y
F018510	Metagenome / Metatranscriptome	234	Y
F019483	Metagenome / Metatranscriptome	229	Y
F024195	Metagenome / Metatranscriptome	207	Y
F027822	Metagenome	193	N
F039667	Metagenome / Metatranscriptome	163	Y
F042304	Metagenome / Metatranscriptome	158	Y
F051243	Metagenome	144	Y
F060332	Metagenome / Metatranscriptome	133	Y
F061021	Metagenome	132	Y
F063596	Metagenome / Metatranscriptome	129	Y
F064409	Metagenome	128	N
F066524	Metagenome / Metatranscriptome	126	Y
F066535	Metagenome / Metatranscriptome	126	Y
F069988	Metagenome / Metatranscriptome	123	Y
F072383	Metagenome / Metatranscriptome	121	Y
F073235	Metagenome / Metatranscriptome	120	Y
F078424	Metagenome / Metatranscriptome	116	Y
F086741	Metagenome / Metatranscriptome	110	N
F092248	Metagenome / Metatranscriptome	107	Y
F095566	Metagenome / Metatranscriptome	105	Y
F096054	Metagenome / Metatranscriptome	105	Y
F100652	Metagenome / Metatranscriptome	102	N
F102809	Metagenome / Metatranscriptome	101	Y
F104576	Metagenome / Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0228698_1000298	All Organisms → cellular organisms → Bacteria	42010
Ga0228698_1000399	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	35377
Ga0228698_1000772	Not Available	19732
Ga0228698_1003375	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	6278
Ga0228698_1005141	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida	4688
Ga0228698_1005988	All Organisms → Viruses	4190
Ga0228698_1008539	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	3249
Ga0228698_1008635	All Organisms → Viruses → Predicted Viral	3224
Ga0228698_1020469	Not Available	1760
Ga0228698_1022448	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Mammalia → Theria → Eutheria → Boreoeutheria → Laurasiatheria → Artiodactyla → Ruminantia → Pecora	1654
Ga0228698_1043182	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	1075
Ga0228698_1044455	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1056
Ga0228698_1046384	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1028
Ga0228698_1057499	Not Available	900
Ga0228698_1057509	Not Available	900
Ga0228698_1057841	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	897
Ga0228698_1070622	Not Available	794
Ga0228698_1075458	All Organisms → Viruses → Varidnaviria → Bamfordvirae → Preplasmiviricota → Tectiliviricetes → Kalamavirales → Tectiviridae → Deltatectivirus	762
Ga0228698_1077509	All Organisms → cellular organisms → Bacteria	749
Ga0228698_1079123	Not Available	740
Ga0228698_1087909	All Organisms → cellular organisms → Bacteria	693
Ga0228698_1096712	All Organisms → cellular organisms → Eukaryota → Opisthokonta	654
Ga0228698_1099881	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Vibrio phage 1.187.O._10N.286.49.F1	642
Ga0228698_1102570	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	632
Ga0228698_1121557	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Mammalia → Theria → Eutheria → Boreoeutheria → Laurasiatheria → Artiodactyla → Ruminantia → Pecora → Bovidae → Bovinae → Bos → Bos grunniens	570
Ga0228698_1130229	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	547
Ga0228698_1138832	All Organisms → cellular organisms → Bacteria	527
Ga0228698_1139213	Not Available	526
Ga0228698_1141103	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	522

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0228698_1000257	Ga0228698_100025741	F042304	MEKLINTYRAAPTDANRTKLQKYLDKHMMAICMATPEELAFLKANGFSI
Ga0228698_1000298	Ga0228698_100029851	F066535	MGVQTFPQVLAVGKVDGPTLTAAAAASCIPTPEKLTLPNNYWYIGRTWRLTMHGRISTVITTPGTARFDLRIGAVVAWDSQAILLDTVAGHTTMPWVLEVLLTCRAVGTGTSTQLFGVGKWSCEDILGTPATSPKGSLVAMLPWNAAPALGTGFDNTALNTVDVFFTQTAATGSLTVHQYLLEELT
Ga0228698_1000399	Ga0228698_100039918	F078424	MTVTGQVFSGVSAQPSIDSAEQQFTHVVATVTTSGSTTLHTPATGKAVRLRWIYAVGDPAAATTPLIKILLGAEEKYRVYAISKRQLVTGPVDGALIVNLSASGSVAVTALLEEV
Ga0228698_1000772	Ga0228698_10007722	F004727	MKVTITYHDNDSFTVEEVVKQAVQNYGKAAQVDIMPESTLAYDHIYFGLQQLITHEQLSLLFDRGSNYQGEINKLRQDVLYKVTEIIDQVIIDNEAKVE
Ga0228698_1003375	Ga0228698_100337514	F073235	MCNFKSGIVVQDLKEKGGFRLLMSPWTESHSELCDIYKVKDGARLTFARVEFSPPSMDVAHLVDGYKLRIDEDRTPEWFTDDMKEKVSDKMRAYVKAMIVNGDVSLLIGGQFIIAPGAKVECAKAMVINAICGGTVSAIRGGTVSEIWGGTVSEICGGTVSAIR
Ga0228698_1005141	Ga0228698_10051413	F092248	LLRLLLPLSDMVYLIFRTWHEASRSPKGSPDHSKSVGATGGVYKGQGLNRRKVMTCAY
Ga0228698_1005988	Ga0228698_10059881	F104576	LEKCVNNNRVLVYDQENGLETTEILVQSIITDEGLLHPYAVGEINLQVRYALM
Ga0228698_1008539	Ga0228698_10085393	F019483	MATGMGTATIDFGSFPGTSEASIAVTGQTTISATSKAEAYMMADDSTAGHTAADHRYAAALIGFTCGTPSAGTGFTIYGRALDKMQGTFALRWVWAD
Ga0228698_1008635	Ga0228698_10086351	F073235	MCNFKSGIVIQDLKEKGGFRLLMSPWTESHSELCDIYKVKDSARLTFARVEFSPPSMDVAHLVDGYKLRIDEERTPEWFTDEMKEKVSEKMRAYVKSMIVTGDVCLLIGGQFIIAPGAKVECAKAMIINAICGGTVSEICGGTVSKICDGTVSAIWSGTVSEICGGTVSEICGGTVSAIR
Ga0228698_1020469	Ga0228698_10204691	F073235	MCKFKSGIVLRDEREKGGFKLLMSPWTESHSELCIIHKIKDGARLNFARVEFSPDTMSNAHLLEKYSLTIDEVRTPDWFDEEMKLSVAAKMETYVKGLIVTGDVELLIGGQFIVAPGASVRSAHTMVINAICGGTVSAIWGGTVSEICGGTVS
Ga0228698_1022448	Ga0228698_10224484	F051243	MVVLQGNGTPLQYSCPENPMDGGAWWAAVHGVAKSRTRLSDFTFPFHFHALEKEMATHSSVLAWRIPGTGEPGGLPSRV
Ga0228698_1043182	Ga0228698_10431821	F060332	SAQIEPWSRMDTFSKVSQFIPDQNKIRLSNGREYTYKSLVLSTGFNHSSEHIEGLSAMEHDPQSNVFVHAIDNKERVDRNYYHGWNHTNGDMICYSPKFPYKGEGSDFYPLYYHHFLRQDILQGRAAKNARIQYWTPNKEIFKFPYANEVALEECKKRGIEIFFGWEMLKVHTNSIGQKIATFRNVDSGETIEKDFFSAVINPPSKPHSELLDSGIATSEGVVDVNPYTL
Ga0228698_1044455	Ga0228698_10444551	F063596	MSSTSAAFGFRPSYHNSGNIRPKAYTIATGYAANIFNGDPVKLVT
Ga0228698_1046384	Ga0228698_10463844	F018510	ANKGDGLPRHDHVYAHATVCHSGSIVVRIEGRDVVFTKTAQPAVLSAAKWHEIEALEDGTVFENIFRTE
Ga0228698_1057499	Ga0228698_10574992	F064409	VKLFTLPRVSPRYALRAALYRRVARGQGVTGLDFSEAALRQLYDFESRGIGSVDKARNGYAYGKWCVDLSVSMWVEDIQAGNACKAEFLQTAIQRIHNADKLKNMIAGEFFPWRQEIADYKVAP
Ga0228698_1057509	Ga0228698_10575091	F019483	PGANDASIAVTGQTGISATSKAEAFIMADDTSTDGHTANDHRYFDMLAGLTCGTPTDGTGFTIYATSQHKLQGKFALRWVWSD
Ga0228698_1057841	Ga0228698_10578411	F100652	MVYKIRNKGFNNTAAALNPRVHPAKKTKIHADLTRYITMQVQITRFTGMRILHNYRNISRASKQFLMGDRILEQLMILTVKEHYFRPMYYRSPIENSFYLGRSLADLTDRHYALFANNQHPLQLYVYEEYNKFLRAAHCKQNQENLAAIDARMGEVMEDRSKLLNSKEGELLSFDDISDVYMQVMGEHRSKTNMSLTTRSKTGEISDYLEVRRPFGAAQ
Ga0228698_1060588	Ga0228698_10605882	F096054	MDLNVYEDDDDETLHRKLIAAKIARKRAEEDHKLLSNRIALLKQEEQKVPQELL
Ga0228698_1070622	Ga0228698_10706222	F027822	RKLRNRIPGKLVVKDLQTIYFDACGGDRNAITFVACFHHYCHAIDDLVDGDVPFSPSALLDIVMQANALYSLPFYIEHWFRLQPVIALIANTYADSVAWEKSAEDWKRNIADVIRQCGNDMIMAVAWIVGGYQLMRKISLELREVAYHSQHS
Ga0228698_1075458	Ga0228698_10754582	F024195	ETMGDRAFNVLGAIVTVALVTTIVSRPTSAAVIKAMGDAFAGSISAALGKGAL
Ga0228698_1077509	Ga0228698_10775091	F086741	PNTMSLPHIMLVKWHRAGGGAEYGVECRDFNPDARWDVVGSVVLMPDVHIYRFSPTAIWRKKRVLPPHLYGLEQPERVAEIRGLYRGYRFGAWGEAVHQCAIALMRERHYPERLAYRWDVLWRGADRKTV
Ga0228698_1079123	Ga0228698_10791232	F072383	MQVNISYTDTESLTMEEVVKQAVHNYGKLVKVEVKPESNLAYDHIYFGLQQLVSHEQFSLLFERDANY
Ga0228698_1087909	Ga0228698_10879092	F019483	MATGMGTATIDFGSFPGTSEASIAVTGQTTISATSKAEAYMMADDSTAGHTAVDHRYAAALIGFTCGTPTAGTGFTIYGRALDKMQGTFALRWVWAD
Ga0228698_1096712	Ga0228698_10967121	F002002	QEMWVWSLGWADTLEKEMATHFHILAWKIPWTEELGGPQAMGLQKSRT
Ga0228698_1099881	Ga0228698_10998811	F069988	VAEHDDYCDAFSQAIIYLKNDGWFVLPTAKDRDEPARPPKQKINPYAA
Ga0228698_1102570	Ga0228698_11025701	F095566	MQSVVTRPVYRSDFNWTNYTSRAQLRCLLGLLFIRELPIKNFYVRCWLAYGWIIYFVARGLGRGLRHSRPIVMYNHALHAKSLMNYPDLFYWNITKVLPRNPPVPDAHREWKTRQTPVFHQYHRTTYRYRHRKPRYVPWDGS
Ga0228698_1105878	Ga0228698_11058783	F066524	VNYTQLVQEVSSYLENTFATADMNTFIEQCEARVYNTV
Ga0228698_1121197	Ga0228698_11211972	F102809	MIEHWRYRLGETNKTHGAPHRDRRFPVDRKKNYVRYSNFHQIRRNKRLNMIWTNWWCRDQNFRKYFEMRKRHGIRPALSGFYHEQIYADVEKKNWELSQRRASRTAI
Ga0228698_1121557	Ga0228698_11215571	F001445	EKEMATHSSVLAWRIPGTGEPGGLPSMGSHRVGHD
Ga0228698_1130229	Ga0228698_11302291	F061021	RFKSSKGNIMATYEQISYNSPDGSIWGKSASEKVAFYGAVPVIQRAYSSAVHATSGASVSASFGATQLAILQEIQNTLIGLGIWATA
Ga0228698_1138832	Ga0228698_11388321	F002031	VSPKTPMLNRSKVKQFTMTTAEKRAHKFTRVGSEFFVRCEVQLKNFIRDQVHRHPSVGKT
Ga0228698_1139213	Ga0228698_11392131	F073235	MCNFKSGIVIQDLKEKGGFRLLMSPWTESHSELCEIYKVKDGARHTFARVEFSPPSMDVAHLVDGYKLRIDEERTPEWFTEEMKEKVADKMRAYVKSMIVTGDVSLLIGGQFIIAPGAKVECAKAMIINAICGGTVAEICGG
Ga0228698_1141103	Ga0228698_11411032	F039667	MAFYGVNLEVKVRELNLHFKLALQQKGGAVGLRSLARIFTRMDANGNKKLDASEFEQALAAFGYIVIC