3300022466: Metatranscriptome of phyllosphere microbial comminities from switchgrass, Michigan, USA - G5R1_MAIN_12SEP2016_LR1 MT pilot (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300022466
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128851 | Gp0211512 | Ga0213504
• Sample Name: Metatranscriptome of phyllosphere microbial comminities from switchgrass, Michigan, USA - G5R1_MAIN_12SEP2016_LR1 MT pilot (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 10467752
• Sequencing Scaffolds: 11
• Novel Protein Genes: 13
• Associated Families: 12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Ustilaginomycotina → Ustilaginomycetes → Ustilaginales → Ustilaginaceae → Ustilago → Ustilago bromivora	1
Not Available	3
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fagales → Fagaceae → Castanea → Castanea mollissima	1
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Evosea → Variosea → Cavosteliida → Cavosteliaceae → Planoprotostelium → Planoprotostelium fungivorum	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea	1
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum	1
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → unclassified Narnaviridae → Botrytis cinerea binarnavirus 5	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Switchgrass Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Plant → Plant surface

Location Information

• Location: USA: Michigan
• Coordinates
  • Lat. (^o): 42.39
  • Long. (^o): -85.37
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009305	Metagenome / Metatranscriptome	319	Y
F014470	Metatranscriptome	262	Y
F019067	Metagenome / Metatranscriptome	231	Y
F021791	Metagenome / Metatranscriptome	217	Y
F022892	Metagenome / Metatranscriptome	212	Y
F025200	Metagenome / Metatranscriptome	202	Y
F030315	Metagenome / Metatranscriptome	185	Y
F040414	Metagenome / Metatranscriptome	161	Y
F049431	Metagenome / Metatranscriptome	146	N
F056211	Metagenome / Metatranscriptome	137	Y
F062397	Metagenome / Metatranscriptome	130	Y
F068385	Metagenome / Metatranscriptome	124	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0213504_100121	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Ustilaginomycotina → Ustilaginomycetes → Ustilaginales → Ustilaginaceae → Ustilago → Ustilago bromivora	2449
Ga0213504_101381	Not Available	945
Ga0213504_102907	Not Available	691
Ga0213504_103092	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fagales → Fagaceae → Castanea → Castanea mollissima	676
Ga0213504_103753	Not Available	624
Ga0213504_103852	All Organisms → cellular organisms → Eukaryota → Amoebozoa → Evosea → Variosea → Cavosteliida → Cavosteliaceae → Planoprotostelium → Planoprotostelium fungivorum	617
Ga0213504_104444	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum	582
Ga0213504_104468	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea	580
Ga0213504_105199	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae	544
Ga0213504_105530	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum	532
Ga0213504_105551	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → unclassified Narnaviridae → Botrytis cinerea binarnavirus 5	531

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0213504_100121	Ga0213504_1001213	F022892	AHSIGTVILRLPPYAVASQEKILIPVGTAMIIVAAVK
Ga0213504_101381	Ga0213504_1013812	F068385	EKLMINLVSYEMRKETHQFGTTMRAKDSILKVKDLSSLKCHKEMKDTXFR
Ga0213504_102907	Ga0213504_1029071	F021791	VRFCADYRIKPHVPPFEQIPANSVKFQPCDCTAQAEYLKR
Ga0213504_102907	Ga0213504_1029072	F030315	VIKYNEFVSIIKYEGISLIKNDIDALKYKNRIGLDTLLVYTIKYEY
Ga0213504_103092	Ga0213504_1030921	F049431	TGRINQVTILSPSAEAREQTPRRRPGCTGRKGRRRSEPQPQASEVCETPKPQATDSIAPTEFPKLRSATGGIRLLHRSLHRYIRPSGGEDSRQVNAQARVLDRAIPEDLVKRLAKPVIHRPQMLPANRETSRTSVPSASTLQLPEGGQHRASRKESPSPK
Ga0213504_103753	Ga0213504_1037532	F030315	MKYIEFIIIINYENILLLKNDIEVLKYNYRIGLDTLLVYTVKYEYIINLLKLTF
Ga0213504_103852	Ga0213504_1038521	F056211	ADSQINNTLNVPNENMNTSITKSTTATGTGVSRGKGDVWHPYINDPSYGQRLLEVVSFLIILAAIPAFLGGVYSCFVMAYGAALGLLGMHAWTRRHALIFIISAAVFGVWLVVVIILNAVRDVSTVVPFYSDVVIASTRYSSGQYNGSRIFAYIDHGILIVLTAIAFFTAIKVAGERRPEPGTLVHQTTTSTTNVPQSV
Ga0213504_104444	Ga0213504_1044442	F062397	MCMNGLRINMGFGPSFGLWPSSFSVLALDHGPRHFMLQNRPKTYKNEVPPKYMCKCENDQ
Ga0213504_104468	Ga0213504_1044681	F009305	LIRLAYAHYLSAFYMAYLGLLHGIDMHYDXKNESTYDGLEPEMSXXDEALGNELGTFIEALVILNIVCWXLYPEPEALSYEIFMXGDIGMVSDVRFYGVAPHWYFRPYMAWLIVCPHHKTGIFGLALFFFALFHQPTLHGFNENGSYYKRRLLFSANKLKQKTFYKQSNLNVELNLFFQTTYALFVMCALYT
Ga0213504_105199	Ga0213504_1051991	F040414	TSVCVNARQTSVDLVAASDGLDLRVSEAILDALFFTSVKIPRSLRAFAKSSLRPWFQGSRGKPVRVNHGQMQGAYLSFPLLCLHSYCAATWADRFDKEARFLVNGDDTVISAYRDVTVQDYPSGYRLNNDKTIRAGNAAEVNSTVFLKSKGRWREVRHLRRGGAVADYPGMLHMAKAVTI
Ga0213504_105530	Ga0213504_1055301	F025200	LRPLHVGDDVLGHPNGAVPTTFLLPNLVSNHLAICFLLDHIGGAIALVPPIGLGLDERILDCEFLFVLLIRKLLPWLRTLIVLVAFFVAL
Ga0213504_105551	Ga0213504_1055511	F019067	NVTLTGRGTKVLGREVGDDRVDLSRTPDALCATLVVQEDVIKMITSPEDTSIRKKSWNFCEVTSGPLTDPTQGFDHIRKDGDFTNLGFNDSVILRIILDVQKGEGEEHSSTQPGKMSMLGSRLATPRRENRGLWMIASIFQDSMLCTHKASEPKYLPPIMGGTGVTALFDNPNNVF
Ga0213504_106074	Ga0213504_1060741	F014470	LRSVQWKHGRWGGAKRDVFSPSCGKVRRSYHYRARPGFAYLSFVGPGRPKLSPLWEKGADWGLVPASFQTEEEERGLAELEQFRRNWDSGFISVGD