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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300021437 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0131212 | Gp0238826 | Ga0213917 |
| Sample Name | Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 1-17 MG |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 155244191 |
| Sequencing Scaffolds | 36 |
| Novel Protein Genes | 36 |
| Associated Families | 25 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria | 6 |
| Not Available | 18 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 3 |
| All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium | 1 |
| All Organisms → Viruses → Predicted Viral | 2 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfurellales → unclassified Desulfurellales → Desulfurellales bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → unclassified Patescibacteria group → Patescibacteria group bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium | 2 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | freshwater biome → bayou → fresh water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 33.9406 | Long. (o) | -83.5607 | Alt. (m) | N/A | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000324 | Metagenome / Metatranscriptome | 1299 | Y |
| F000624 | Metagenome / Metatranscriptome | 977 | Y |
| F001484 | Metagenome / Metatranscriptome | 686 | Y |
| F003471 | Metagenome / Metatranscriptome | 485 | Y |
| F003605 | Metagenome / Metatranscriptome | 477 | Y |
| F007383 | Metagenome | 352 | Y |
| F008498 | Metagenome / Metatranscriptome | 332 | Y |
| F015419 | Metagenome / Metatranscriptome | 255 | Y |
| F015573 | Metagenome | 253 | Y |
| F019483 | Metagenome / Metatranscriptome | 229 | Y |
| F020318 | Metagenome / Metatranscriptome | 224 | Y |
| F029685 | Metagenome | 187 | Y |
| F034114 | Metagenome / Metatranscriptome | 175 | Y |
| F038145 | Metagenome / Metatranscriptome | 166 | Y |
| F039244 | Metagenome | 164 | Y |
| F043844 | Metagenome / Metatranscriptome | 155 | Y |
| F045006 | Metagenome / Metatranscriptome | 153 | Y |
| F054814 | Metagenome / Metatranscriptome | 139 | Y |
| F060712 | Metagenome / Metatranscriptome | 132 | Y |
| F061021 | Metagenome | 132 | Y |
| F064858 | Metagenome / Metatranscriptome | 128 | Y |
| F073235 | Metagenome / Metatranscriptome | 120 | Y |
| F075390 | Metagenome / Metatranscriptome | 119 | Y |
| F089142 | Metagenome / Metatranscriptome | 109 | Y |
| F089963 | Metagenome | 108 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0213917_1000012 | All Organisms → cellular organisms → Bacteria | 62504 | Open in IMG/M |
| Ga0213917_1000017 | Not Available | 59225 | Open in IMG/M |
| Ga0213917_1000024 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 47035 | Open in IMG/M |
| Ga0213917_1000026 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 44406 | Open in IMG/M |
| Ga0213917_1000034 | Not Available | 42608 | Open in IMG/M |
| Ga0213917_1000041 | Not Available | 40756 | Open in IMG/M |
| Ga0213917_1000053 | Not Available | 37181 | Open in IMG/M |
| Ga0213917_1000064 | Not Available | 31515 | Open in IMG/M |
| Ga0213917_1000096 | Not Available | 22077 | Open in IMG/M |
| Ga0213917_1000184 | All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium | 12134 | Open in IMG/M |
| Ga0213917_1000190 | Not Available | 11951 | Open in IMG/M |
| Ga0213917_1000979 | Not Available | 3932 | Open in IMG/M |
| Ga0213917_1001385 | Not Available | 3149 | Open in IMG/M |
| Ga0213917_1001525 | Not Available | 2950 | Open in IMG/M |
| Ga0213917_1001528 | Not Available | 2945 | Open in IMG/M |
| Ga0213917_1001722 | Not Available | 2748 | Open in IMG/M |
| Ga0213917_1003878 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 1648 | Open in IMG/M |
| Ga0213917_1004144 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium | 1593 | Open in IMG/M |
| Ga0213917_1004547 | Not Available | 1510 | Open in IMG/M |
| Ga0213917_1004980 | All Organisms → Viruses → Predicted Viral | 1435 | Open in IMG/M |
| Ga0213917_1008773 | All Organisms → Viruses → Predicted Viral | 1072 | Open in IMG/M |
| Ga0213917_1010243 | Not Available | 996 | Open in IMG/M |
| Ga0213917_1012576 | All Organisms → cellular organisms → Bacteria | 903 | Open in IMG/M |
| Ga0213917_1013146 | Not Available | 886 | Open in IMG/M |
| Ga0213917_1013196 | All Organisms → cellular organisms → Bacteria | 884 | Open in IMG/M |
| Ga0213917_1018705 | All Organisms → cellular organisms → Bacteria | 753 | Open in IMG/M |
| Ga0213917_1020265 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfurellales → unclassified Desulfurellales → Desulfurellales bacterium | 727 | Open in IMG/M |
| Ga0213917_1020409 | Not Available | 725 | Open in IMG/M |
| Ga0213917_1028709 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → unclassified Patescibacteria group → Patescibacteria group bacterium | 624 | Open in IMG/M |
| Ga0213917_1029981 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 613 | Open in IMG/M |
| Ga0213917_1030173 | Not Available | 611 | Open in IMG/M |
| Ga0213917_1037804 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium | 555 | Open in IMG/M |
| Ga0213917_1038291 | All Organisms → cellular organisms → Bacteria | 552 | Open in IMG/M |
| Ga0213917_1043623 | All Organisms → cellular organisms → Bacteria | 523 | Open in IMG/M |
| Ga0213917_1043790 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium | 522 | Open in IMG/M |
| Ga0213917_1048123 | Not Available | 501 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0213917_1000012 | Ga0213917_100001244 | F000624 | MNPGWVTALVVVCVQFVLFVRWLYRRARNDEINRAFVRDMATNHLPHLYGALRQLAEAQGIELKEPPLVQFVDLNGRSWGPRRDVDEG |
| Ga0213917_1000017 | Ga0213917_1000017113 | F054814 | MAEVKIGGLYKVVVTEYEAGWGQRVDPNDTKYFTTIEEAEAYKAHWEEGGSYECYWRAQISKL |
| Ga0213917_1000024 | Ga0213917_100002450 | F019483 | MANAIGTAEIDFGAFPGSNDASVTVTGQTTISATSKVESFVMADDTSTDGHTANDHRYFNMLAGLTCGTPTAGTGFTIYATSQQKLQGKFALRWVWSD |
| Ga0213917_1000026 | Ga0213917_100002646 | F019483 | MATGTGVAEIDFGAFPGANEASIAVSGQGSISATSKAEAWVMADDVSSDTLHTAADHRYLPQFASFTCGTPTAATGFTIYGRSVHKLQGKWKLRWVWAD |
| Ga0213917_1000034 | Ga0213917_100003421 | F003605 | MAIGDAATAAGFPLVPDTGEEGRVRYGAREINRTRDEVAGVLGLIPSGKAAYRTAAGITSGTADPSGGSDGDIYFKILS |
| Ga0213917_1000041 | Ga0213917_100004128 | F019483 | MANGTGTATIDFGAFPGKNETSVAVTGQTTISATSKVEAWIMGDDTSTSHTAADHKYAPLFMSLTCGTPTAGTGFTIYGRSQHKMQGTWSVRWVWSD |
| Ga0213917_1000053 | Ga0213917_100005325 | F038145 | MPYTAKQHRLFEAAAHNPAVAKSSGIPVHTAQKMASEGIKQQPQKLAAALRKKG |
| Ga0213917_1000064 | Ga0213917_100006421 | F019483 | MANAIGTAVIDFGAFPGANDASIAVTGQTGISATSKAEAFIMADDTSTDGHTANDHRYFDMLAGLTCGTPTAGTGFTIYATSQHKLQGKFALRWVWSD |
| Ga0213917_1000096 | Ga0213917_100009612 | F019483 | VANAIGTAEIDFGAFPGSNDASVAVTGQTTISATSKVEAFVMADDTSTDGHTANDHRYFDMLAGLTCGTPTAGTGFTIYATSQHKLQGKFALRWVWSD |
| Ga0213917_1000184 | Ga0213917_100018423 | F015419 | MEYKVQITDEAGNVQQYVVSRSSSSEDKSLNDFILEALQISEDKRKLPLKTQCPNGLEVYPSIKMKFENYGSPLLGDKLEAMHITWRD |
| Ga0213917_1000190 | Ga0213917_100019016 | F019483 | MANGTGTATVDFGAFPGKNETSVTVTGQTTISATSKAESWIMGDDTSTGHTAADHKYAPLFMALTCGTPTAATGFTIYARAIDKLQGTWTVRWVWSD |
| Ga0213917_1000979 | Ga0213917_10009796 | F064858 | VEAAIDNSFEYAPWDSEQVSRGSAVRAALASAVKTIILNVPPGPDRTVAIRKLREARMDCNSAITHNGKY |
| Ga0213917_1001385 | Ga0213917_10013856 | F034114 | MPMILIETSVAAGASNSNLVSGSAFEFARVRQLMSCGVVQSATGGFATITSGPDIIAEEFMAPILTTYPIIPDNMYFTDVMEQGDRLVIRYRNPTGGALTVRTLVQTSPI |
| Ga0213917_1001525 | Ga0213917_10015251 | F034114 | VSGSAFEFARTRQLMSCGVVQSATGGFTTITSGPDIIAEEFSVPILTTYPIIPDNMYFTDVMEQGDRLVIRYRNPTAGALTVRALVQTSAV |
| Ga0213917_1001528 | Ga0213917_10015284 | F034114 | MPMIMVESSIAAGASNNNLVSGSAFEFSRGRNVVSIGLVQSVTGMFGTIQAGADIVAEEFSLPILTTYPIIPDNMYFTDVMENGDRLVLRVRNPTAGAIVARAAVQMSAIR |
| Ga0213917_1001722 | Ga0213917_10017222 | F034114 | MPMIMIETSIVAGAVNNNLVSGSAFEFSRGRNVVSIGVVQSATGMFATIQAGADIVAEEFSLPILTTYPIIPDNMYFTDVMENGDRLVIRVRNPTAGALTARAAVQMSAIR |
| Ga0213917_1003878 | Ga0213917_10038784 | F061021 | MASYETIGYNSPDGSIWGLTATDKIGVYGKVPVVQRPYSSAVHATSALSSSTDFGATQLAWAQEVTNTLIGLGIWATV |
| Ga0213917_1004144 | Ga0213917_10041441 | F001484 | NIEYTKLAQWATDDERKSVVDGVRRLTATALDELRRQIDAQMMQDGSGSIGTITTVSTSAGVDTYTCTTDGFGVRLMRYGQTVQVYDSTLATLRGSGVITTWDVANNQVKVTPAVAGAVATDILVTAGLSSPASLPALYGVPYHHSNSSSGTWLGFSRSATPEIRSNRVNAGGAALSLPLPRLAINKIGNRVGIDNSFSPNAWMHPCQAQAYEEIGQLVMLIHKTPKEENLNLYFGEDMQMAGASVRRSYNWDKTRIDFVANEVWGRGEILPIGFYTTDGRRIFELRGASGGVATADIFYMVVGMQTFVNNPAATAYINNLAVPAGY |
| Ga0213917_1004547 | Ga0213917_10045471 | F073235 | MCQFKSAIVIRDEREKGGFKLLMSPWTESHSELCQIYKIKDGSRLTFARVEYSPDKIENAYIPEKYKLKIDEERTPDWFDSEMKEKVSDKMSDYIKSIIVSGEVSLLIGGQFIIAPGAKVECAKSMVISAICGGTVSAI |
| Ga0213917_1004980 | Ga0213917_10049803 | F000324 | MTTLVRPVHSFTYDGTRINVYHANKGEGLPRHQHIFAHGTFCTTGAMVVRKEGREVAIDKHTQPINLVAHEWHELEATEDNTVFCNVFADQYSSLPVDYTP |
| Ga0213917_1008773 | Ga0213917_10087734 | F003471 | MAEHNDVGEYNKRMPQPVPTPATAGYPNNIPSTQTKTKRGQGAAQRGNKYSKNSQ |
| Ga0213917_1010243 | Ga0213917_10102432 | F034114 | MPMILIETSVAAGAVNNNLVSGSAFEFARTRQIMSCGVVQSATGGFATITSGPDLIAEEFSVPILTTYPILPDNMYFTDYMEQGDRLVIRYRNPTGGALTARALVQTSPVK |
| Ga0213917_1012576 | Ga0213917_10125763 | F043844 | MTRTPWYLRQEFWIVVGTLVLPFFWILPLSRAAYARVGLRRDRRF |
| Ga0213917_1013146 | Ga0213917_10131461 | F015573 | MTDESELTNIRRELKIIREQLSKVVNYMVEAESEVPEKMRRFIMYMHDIHDIKNLYDEHGLAVPSHVLREVERCDDRLRQLLTELHTDGGAFEKVRREMAKDTDNRWDHTRLLT |
| Ga0213917_1013196 | Ga0213917_10131961 | F029685 | LFRADFDGDGRPDYAALLRIGEPAGKPGEALRTAPLWAVVFLAKRDGRYRPFILFKDGDAMFPSRRALWVQPPGPVRHGRHPERVLTLRHPGVGSMFCESTAKVFYWVGLRQTFREYLTK |
| Ga0213917_1018705 | Ga0213917_10187052 | F007383 | VSFRDKEARVTFDPAQVGVEQLIGAVKKIGFRASLKRQGE |
| Ga0213917_1020265 | Ga0213917_10202653 | F060712 | MTSLVDIVNRALQVPGTRTTVTAAELAGNLTNEAIQANLILNTIRRRLLRMAPWNFATKTINMVYISSVPGTPENTSPATNLWQPGQPSPPWAYEYQYPVDCLRAL |
| Ga0213917_1020409 | Ga0213917_10204092 | F061021 | MATYEQISYNSPDGSIWGKSASEKVAFYGAVPVIQRAYSSAVHATSGASVSASFGATQLAILQEIQNTLIGLGIWATA |
| Ga0213917_1028709 | Ga0213917_10287091 | F089142 | MEFTTYVRVPFRVEAVEITVDNIEEVAKYIGDVREKDDGTKYILVDRRLVPNVYRVFPGFFMTKMGENVRCYSRKIFLEQFAKVHTDPVDALV |
| Ga0213917_1029981 | Ga0213917_10299811 | F020318 | RMTVVTQETFEEWRQHPVTRKLMKLLLADREAMKEGLVNNAFEDEKEVKGRCRALAIILTLEYEDLYEVLPKKESLEYEQREWH |
| Ga0213917_1030173 | Ga0213917_10301731 | F008498 | MGTVTYKNQPGIDKTKGNVPLAGTSHIYTVKKVLWPDAIETFLNTLLIGKSLHVCCGKSKLGDVRLDLYEQDIDIKADAVNMPVESDSFDTVLCDPPYNGKFQWNHDLLKELARVARQRIIFQHWFIPATPKGKYKKAQDKFSLSEIYVWQPRTYFGRAQIISIFDKSNDG |
| Ga0213917_1037804 | Ga0213917_10378041 | F045006 | MKRPDSLRRLVGFVVGAALLLSLAAPARAQLDPITLSLIIGGFQLVGGAISAITIGAGTDTKTGIALPYGTPCGIVDGVPQICWQPHAGGFEGSPDLPTGANSAPAPTHHPVDSPDPSGAPGQVQGQ |
| Ga0213917_1038291 | Ga0213917_10382911 | F001484 | VGIDNNFDPVAWTHPCQAQAYEEIGQLISIIHKAPKDEALNLYFGDNMQLAGAPIKQHFNWSKKRIDFVVSSIWGRAEILPIGFYTSDGRRIFELRGASGGVATADIFYMVVGFQTFVLNPAATAYIDSLAIPSGY |
| Ga0213917_1043623 | Ga0213917_10436232 | F039244 | MPQNVPEFRFSDDALRLRQFVYEHWCAHGHAPNLRAAHEATGLSRQQLLEAYKQLDLGI |
| Ga0213917_1043790 | Ga0213917_10437901 | F089963 | DALTPGRWHAVNRRIWGGYMRLGRRDLVGFELEAALRPLFRALHLRDLDLGLERKTRELLARTIERIADVAGETIDRLLEAGDRNAAMQRWQDVRGIIQKARDQGLSHEELAHSFGRARRMLEQIEATKG |
| Ga0213917_1048123 | Ga0213917_10481231 | F075390 | YQKWRERMATGTWKIYSKAKKYIGAGTITLGAGVFKMCLLRTSASAAIMVLSTRSVWSSLSGTEISARGGYAAGGRNLVPATAQWTAGASAKQWKFTYSTIGLAFTASNSALNNIRYCVVRNSTGAGAGKLLMFCTLSTAAFTISSPNVLTILPAATGCFTLV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |