Sample 3300021437

Basic Information
IMG/M Taxon OID	3300021437 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0131212 \| Gp0238826 \| Ga0213917
Sample Name	Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 1-17 MG
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300021437 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0131212 | Gp0238826 | Ga0213917

Sample Name

Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 1-17 MG

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	155244191
Sequencing Scaffolds	36
Novel Protein Genes	36
Associated Families	25

Dataset Contents

Total Genome Size

155244191

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	6
Not Available	18
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	3
All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	1
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfurellales → unclassified Desulfurellales → Desulfurellales bacterium	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → unclassified Patescibacteria group → Patescibacteria group bacterium	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Bacteria

Not Available

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium

All Organisms → cellular organisms → Bacteria → Proteobacteria

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium

All Organisms → Viruses → Predicted Viral

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfurellales → unclassified Desulfurellales → Desulfurellales bacterium

All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → unclassified Patescibacteria group → Patescibacteria group bacterium

All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium

Ecosystem Assignment (GOLD)
Name	Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Ecosystem Assignment (GOLD)

Name

Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Type

Environmental

Taxonomy

Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	freshwater biome → bayou → fresh water
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

freshwater biome → bayou → fresh water

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Water (non-saline)

Location Information
Location	USA: Georgia
Coordinates	Lat. (^o)	33.9406	Long. (^o)	-83.5607	Alt. (m)	N/A	Depth (m)	0
Location on Map

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Location Information

Location

USA: Georgia

Coordinates

Lat. (^o)

33.9406

Long. (^o)

-83.5607

Alt. (m)

N/A

Depth (m)

Location on Map

Zoom:

Powered by OpenStreetMap^©

Family	Category	Number of Sequences	3D Structure?
F000324	Metagenome / Metatranscriptome	1299	Y
F000624	Metagenome / Metatranscriptome	977	Y
F001484	Metagenome / Metatranscriptome	686	Y
F003471	Metagenome / Metatranscriptome	485	Y
F003605	Metagenome / Metatranscriptome	477	Y
F007383	Metagenome	352	Y
F008498	Metagenome / Metatranscriptome	332	Y
F015419	Metagenome / Metatranscriptome	255	Y
F015573	Metagenome	253	Y
F019483	Metagenome / Metatranscriptome	229	Y

Scaffold	Taxonomy	Length	IMG/M Link
Ga0213917_1000012	All Organisms → cellular organisms → Bacteria	62504	Open in IMG/M
Ga0213917_1000017	Not Available	59225	Open in IMG/M
Ga0213917_1000024	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	47035	Open in IMG/M
Ga0213917_1000026	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	44406	Open in IMG/M
Ga0213917_1000034	Not Available	42608	Open in IMG/M
Ga0213917_1000041	Not Available	40756	Open in IMG/M
Ga0213917_1000053	Not Available	37181	Open in IMG/M
Ga0213917_1000064	Not Available	31515	Open in IMG/M
Ga0213917_1000096	Not Available	22077	Open in IMG/M
Ga0213917_1000184	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	12134	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0213917_1000012

All Organisms → cellular organisms → Bacteria

62504

Open in IMG/M

Ga0213917_1000017

Not Available

59225

Open in IMG/M

Ga0213917_1000024

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

47035

Open in IMG/M

Ga0213917_1000026

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

44406

Open in IMG/M

Ga0213917_1000034

Not Available

42608

Open in IMG/M

Ga0213917_1000041

Not Available

40756

Open in IMG/M

Ga0213917_1000053

Not Available

37181

Open in IMG/M

Ga0213917_1000064

Not Available

31515

Open in IMG/M

Ga0213917_1000096

Not Available

22077

Open in IMG/M

Ga0213917_1000184

All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium

12134

Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0213917_1000012	Ga0213917_100001244	F000624	MNPGWVTALVVVCVQFVLFVRWLYRRARNDEINRAFVRDMATNHLPHLYGALRQLAEAQGIELKEPPLVQFVDLNGRSWGPRRDVDEG
Ga0213917_1000017	Ga0213917_1000017113	F054814	MAEVKIGGLYKVVVTEYEAGWGQRVDPNDTKYFTTIEEAEAYKAHWEEGGSYECYWRAQISKL
Ga0213917_1000024	Ga0213917_100002450	F019483	MANAIGTAEIDFGAFPGSNDASVTVTGQTTISATSKVESFVMADDTSTDGHTANDHRYFNMLAGLTCGTPTAGTGFTIYATSQQKLQGKFALRWVWSD
Ga0213917_1000026	Ga0213917_100002646	F019483	MATGTGVAEIDFGAFPGANEASIAVSGQGSISATSKAEAWVMADDVSSDTLHTAADHRYLPQFASFTCGTPTAATGFTIYGRSVHKLQGKWKLRWVWAD
Ga0213917_1000034	Ga0213917_100003421	F003605	MAIGDAATAAGFPLVPDTGEEGRVRYGAREINRTRDEVAGVLGLIPSGKAAYRTAAGITSGTADPSGGSDGDIYFKILS
Ga0213917_1000041	Ga0213917_100004128	F019483	MANGTGTATIDFGAFPGKNETSVAVTGQTTISATSKVEAWIMGDDTSTSHTAADHKYAPLFMSLTCGTPTAGTGFTIYGRSQHKMQGTWSVRWVWSD
Ga0213917_1000053	Ga0213917_100005325	F038145	MPYTAKQHRLFEAAAHNPAVAKSSGIPVHTAQKMASEGIKQQPQKLAAALRKKG
Ga0213917_1000064	Ga0213917_100006421	F019483	MANAIGTAVIDFGAFPGANDASIAVTGQTGISATSKAEAFIMADDTSTDGHTANDHRYFDMLAGLTCGTPTAGTGFTIYATSQHKLQGKFALRWVWSD
Ga0213917_1000096	Ga0213917_100009612	F019483	VANAIGTAEIDFGAFPGSNDASVAVTGQTTISATSKVEAFVMADDTSTDGHTANDHRYFDMLAGLTCGTPTAGTGFTIYATSQHKLQGKFALRWVWSD
Ga0213917_1000184	Ga0213917_100018423	F015419	MEYKVQITDEAGNVQQYVVSRSSSSEDKSLNDFILEALQISEDKRKLPLKTQCPNGLEVYPSIKMKFENYGSPLLGDKLEAMHITWRD
Ga0213917_1000190	Ga0213917_100019016	F019483	MANGTGTATVDFGAFPGKNETSVTVTGQTTISATSKAESWIMGDDTSTGHTAADHKYAPLFMALTCGTPTAATGFTIYARAIDKLQGTWTVRWVWSD
Ga0213917_1000979	Ga0213917_10009796	F064858	VEAAIDNSFEYAPWDSEQVSRGSAVRAALASAVKTIILNVPPGPDRTVAIRKLREARMDCNSAITHNGKY
Ga0213917_1001385	Ga0213917_10013856	F034114	MPMILIETSVAAGASNSNLVSGSAFEFARVRQLMSCGVVQSATGGFATITSGPDIIAEEFMAPILTTYPIIPDNMYFTDVMEQGDRLVIRYRNPTGGALTVRTLVQTSPI
Ga0213917_1001525	Ga0213917_10015251	F034114	VSGSAFEFARTRQLMSCGVVQSATGGFTTITSGPDIIAEEFSVPILTTYPIIPDNMYFTDVMEQGDRLVIRYRNPTAGALTVRALVQTSAV
Ga0213917_1001528	Ga0213917_10015284	F034114	MPMIMVESSIAAGASNNNLVSGSAFEFSRGRNVVSIGLVQSVTGMFGTIQAGADIVAEEFSLPILTTYPIIPDNMYFTDVMENGDRLVLRVRNPTAGAIVARAAVQMSAIR
Ga0213917_1001722	Ga0213917_10017222	F034114	MPMIMIETSIVAGAVNNNLVSGSAFEFSRGRNVVSIGVVQSATGMFATIQAGADIVAEEFSLPILTTYPIIPDNMYFTDVMENGDRLVIRVRNPTAGALTARAAVQMSAIR
Ga0213917_1003878	Ga0213917_10038784	F061021	MASYETIGYNSPDGSIWGLTATDKIGVYGKVPVVQRPYSSAVHATSALSSSTDFGATQLAWAQEVTNTLIGLGIWATV
Ga0213917_1004144	Ga0213917_10041441	F001484	NIEYTKLAQWATDDERKSVVDGVRRLTATALDELRRQIDAQMMQDGSGSIGTITTVSTSAGVDTYTCTTDGFGVRLMRYGQTVQVYDSTLATLRGSGVITTWDVANNQVKVTPAVAGAVATDILVTAGLSSPASLPALYGVPYHHSNSSSGTWLGFSRSATPEIRSNRVNAGGAALSLPLPRLAINKIGNRVGIDNSFSPNAWMHPCQAQAYEEIGQLVMLIHKTPKEENLNLYFGEDMQMAGASVRRSYNWDKTRIDFVANEVWGRGEILPIGFYTTDGRRIFELRGASGGVATADIFYMVVGMQTFVNNPAATAYINNLAVPAGY
Ga0213917_1004547	Ga0213917_10045471	F073235	MCQFKSAIVIRDEREKGGFKLLMSPWTESHSELCQIYKIKDGSRLTFARVEYSPDKIENAYIPEKYKLKIDEERTPDWFDSEMKEKVSDKMSDYIKSIIVSGEVSLLIGGQFIIAPGAKVECAKSMVISAICGGTVSAI
Ga0213917_1004980	Ga0213917_10049803	F000324	MTTLVRPVHSFTYDGTRINVYHANKGEGLPRHQHIFAHGTFCTTGAMVVRKEGREVAIDKHTQPINLVAHEWHELEATEDNTVFCNVFADQYSSLPVDYTP
Ga0213917_1008773	Ga0213917_10087734	F003471	MAEHNDVGEYNKRMPQPVPTPATAGYPNNIPSTQTKTKRGQGAAQRGNKYSKNSQ
Ga0213917_1010243	Ga0213917_10102432	F034114	MPMILIETSVAAGAVNNNLVSGSAFEFARTRQIMSCGVVQSATGGFATITSGPDLIAEEFSVPILTTYPILPDNMYFTDYMEQGDRLVIRYRNPTGGALTARALVQTSPVK
Ga0213917_1012576	Ga0213917_10125763	F043844	MTRTPWYLRQEFWIVVGTLVLPFFWILPLSRAAYARVGLRRDRRF
Ga0213917_1013146	Ga0213917_10131461	F015573	MTDESELTNIRRELKIIREQLSKVVNYMVEAESEVPEKMRRFIMYMHDIHDIKNLYDEHGLAVPSHVLREVERCDDRLRQLLTELHTDGGAFEKVRREMAKDTDNRWDHTRLLT
Ga0213917_1013196	Ga0213917_10131961	F029685	LFRADFDGDGRPDYAALLRIGEPAGKPGEALRTAPLWAVVFLAKRDGRYRPFILFKDGDAMFPSRRALWVQPPGPVRHGRHPERVLTLRHPGVGSMFCESTAKVFYWVGLRQTFREYLTK
Ga0213917_1018705	Ga0213917_10187052	F007383	VSFRDKEARVTFDPAQVGVEQLIGAVKKIGFRASLKRQGE
Ga0213917_1020265	Ga0213917_10202653	F060712	MTSLVDIVNRALQVPGTRTTVTAAELAGNLTNEAIQANLILNTIRRRLLRMAPWNFATKTINMVYISSVPGTPENTSPATNLWQPGQPSPPWAYEYQYPVDCLRAL
Ga0213917_1020409	Ga0213917_10204092	F061021	MATYEQISYNSPDGSIWGKSASEKVAFYGAVPVIQRAYSSAVHATSGASVSASFGATQLAILQEIQNTLIGLGIWATA
Ga0213917_1028709	Ga0213917_10287091	F089142	MEFTTYVRVPFRVEAVEITVDNIEEVAKYIGDVREKDDGTKYILVDRRLVPNVYRVFPGFFMTKMGENVRCYSRKIFLEQFAKVHTDPVDALV
Ga0213917_1029981	Ga0213917_10299811	F020318	RMTVVTQETFEEWRQHPVTRKLMKLLLADREAMKEGLVNNAFEDEKEVKGRCRALAIILTLEYEDLYEVLPKKESLEYEQREWH
Ga0213917_1030173	Ga0213917_10301731	F008498	MGTVTYKNQPGIDKTKGNVPLAGTSHIYTVKKVLWPDAIETFLNTLLIGKSLHVCCGKSKLGDVRLDLYEQDIDIKADAVNMPVESDSFDTVLCDPPYNGKFQWNHDLLKELARVARQRIIFQHWFIPATPKGKYKKAQDKFSLSEIYVWQPRTYFGRAQIISIFDKSNDG
Ga0213917_1037804	Ga0213917_10378041	F045006	MKRPDSLRRLVGFVVGAALLLSLAAPARAQLDPITLSLIIGGFQLVGGAISAITIGAGTDTKTGIALPYGTPCGIVDGVPQICWQPHAGGFEGSPDLPTGANSAPAPTHHPVDSPDPSGAPGQVQGQ
Ga0213917_1038291	Ga0213917_10382911	F001484	VGIDNNFDPVAWTHPCQAQAYEEIGQLISIIHKAPKDEALNLYFGDNMQLAGAPIKQHFNWSKKRIDFVVSSIWGRAEILPIGFYTSDGRRIFELRGASGGVATADIFYMVVGFQTFVLNPAATAYIDSLAIPSGY
Ga0213917_1043623	Ga0213917_10436232	F039244	MPQNVPEFRFSDDALRLRQFVYEHWCAHGHAPNLRAAHEATGLSRQQLLEAYKQLDLGI
Ga0213917_1043790	Ga0213917_10437901	F089963	DALTPGRWHAVNRRIWGGYMRLGRRDLVGFELEAALRPLFRALHLRDLDLGLERKTRELLARTIERIADVAGETIDRLLEAGDRNAAMQRWQDVRGIIQKARDQGLSHEELAHSFGRARRMLEQIEATKG
Ga0213917_1048123	Ga0213917_10481231	F075390	YQKWRERMATGTWKIYSKAKKYIGAGTITLGAGVFKMCLLRTSASAAIMVLSTRSVWSSLSGTEISARGGYAAGGRNLVPATAQWTAGASAKQWKFTYSTIGLAFTASNSALNNIRYCVVRNSTGAGAGKLLMFCTLSTAAFTISSPNVLTILPAATGCFTLV

Showing 1 to 36 of 36 entries

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300021437: Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 1-17 MG

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences