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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300021116 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0063444 | Gp0053748 | Ga0214243 |
| Sample Name | Freshwater microbial communities from Trout Bog Lake, WI - 20SEP2008 hypolimnion |
| Sequencing Status | Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | Y |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 33786504 |
| Sequencing Scaffolds | 31 |
| Novel Protein Genes | 34 |
| Associated Families | 34 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 9 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 1 |
| All Organisms → Viruses → Predicted Viral | 5 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales | 1 |
| Not Available | 10 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 3 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium → Sphingobium chungbukense | 1 |
| All Organisms → cellular organisms → Bacteria | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | freshwater lake biome → hypolimnion → lake water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Trout Bog, Vilas County, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 46.041 | Long. (o) | -89.686 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000926 | Metagenome / Metatranscriptome | 832 | Y |
| F006258 | Metagenome / Metatranscriptome | 377 | Y |
| F007405 | Metagenome | 351 | Y |
| F008860 | Metagenome | 326 | N |
| F013732 | Metagenome / Metatranscriptome | 268 | Y |
| F013852 | Metagenome / Metatranscriptome | 267 | N |
| F014107 | Metagenome / Metatranscriptome | 265 | Y |
| F015336 | Metagenome / Metatranscriptome | 255 | Y |
| F020298 | Metagenome / Metatranscriptome | 224 | Y |
| F021463 | Metagenome | 218 | Y |
| F024029 | Metagenome | 207 | Y |
| F026474 | Metagenome / Metatranscriptome | 197 | Y |
| F027395 | Metagenome | 194 | N |
| F027396 | Metagenome | 194 | Y |
| F035607 | Metagenome / Metatranscriptome | 171 | Y |
| F051645 | Metagenome | 143 | Y |
| F052345 | Metagenome | 142 | Y |
| F059597 | Metagenome / Metatranscriptome | 133 | N |
| F063277 | Metagenome | 129 | N |
| F068205 | Metagenome | 125 | N |
| F074309 | Metagenome | 119 | N |
| F075594 | Metagenome | 118 | N |
| F078138 | Metagenome | 116 | N |
| F079515 | Metagenome / Metatranscriptome | 115 | N |
| F083609 | Metagenome / Metatranscriptome | 112 | N |
| F088110 | Metagenome | 109 | N |
| F091219 | Metagenome / Metatranscriptome | 107 | N |
| F093755 | Metagenome / Metatranscriptome | 106 | Y |
| F096492 | Metagenome | 104 | N |
| F096503 | Metagenome | 104 | N |
| F098526 | Metagenome | 103 | N |
| F099296 | Metagenome / Metatranscriptome | 103 | Y |
| F100249 | Metagenome | 102 | N |
| F104426 | Metagenome / Metatranscriptome | 100 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0214243_100258 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 6684 | Open in IMG/M |
| Ga0214243_100373 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 4959 | Open in IMG/M |
| Ga0214243_100381 | All Organisms → Viruses → Predicted Viral | 4899 | Open in IMG/M |
| Ga0214243_100484 | All Organisms → Viruses → Predicted Viral | 4100 | Open in IMG/M |
| Ga0214243_101117 | All Organisms → Viruses → Predicted Viral | 2193 | Open in IMG/M |
| Ga0214243_101224 | All Organisms → Viruses → Predicted Viral | 2039 | Open in IMG/M |
| Ga0214243_101263 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales | 1999 | Open in IMG/M |
| Ga0214243_101633 | All Organisms → Viruses → Predicted Viral | 1689 | Open in IMG/M |
| Ga0214243_102302 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 1351 | Open in IMG/M |
| Ga0214243_102501 | Not Available | 1275 | Open in IMG/M |
| Ga0214243_102677 | Not Available | 1222 | Open in IMG/M |
| Ga0214243_102894 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 1169 | Open in IMG/M |
| Ga0214243_103763 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 987 | Open in IMG/M |
| Ga0214243_103784 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 983 | Open in IMG/M |
| Ga0214243_104082 | Not Available | 939 | Open in IMG/M |
| Ga0214243_105485 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 790 | Open in IMG/M |
| Ga0214243_106465 | Not Available | 721 | Open in IMG/M |
| Ga0214243_106655 | Not Available | 710 | Open in IMG/M |
| Ga0214243_106969 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 692 | Open in IMG/M |
| Ga0214243_107011 | Not Available | 689 | Open in IMG/M |
| Ga0214243_107260 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium → Sphingobium chungbukense | 676 | Open in IMG/M |
| Ga0214243_107322 | All Organisms → cellular organisms → Bacteria | 674 | Open in IMG/M |
| Ga0214243_107450 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 667 | Open in IMG/M |
| Ga0214243_107828 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 648 | Open in IMG/M |
| Ga0214243_109347 | Not Available | 590 | Open in IMG/M |
| Ga0214243_110075 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 566 | Open in IMG/M |
| Ga0214243_110097 | Not Available | 565 | Open in IMG/M |
| Ga0214243_110565 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 551 | Open in IMG/M |
| Ga0214243_110636 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 548 | Open in IMG/M |
| Ga0214243_110746 | Not Available | 545 | Open in IMG/M |
| Ga0214243_110987 | Not Available | 539 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0214243_100258 | Ga0214243_1002581 | F096492 | AIARFEQINVNNVTNSVDTIGQQTTTITLWFQTRALVQDVRDAAQIGKDDRTYTKNVKFVLNFTPNTLQMSEHQNLYSITWRGQEYRINDVMESNDRMNVSFLCYRNDPAVSV |
| Ga0214243_100373 | Ga0214243_1003738 | F083609 | GTHILPFQILNDGYRNATLKIAGYVNGTDITAYTVLDPSTLSPIDAQGTLAKTVRIKRINFDIQDGIQATLNWDGATPQLLWECTGRGEIKAGPFGGFTDNATTPNGNITLTTLGGATTTLNTSFVIVLEIIKD |
| Ga0214243_100381 | Ga0214243_1003813 | F059597 | MIVRVDEAARKFVLEGAEVIKRESKKIFRTGADAKGIDSWHSNAWPVPTRRTGNLMNSIYSDGARKLGPGKWESQTGPHIVYGRRIELGFHGNGRWPYYTTRPFPYMQPGIDNSIPRLDSLFNSLVIAAQEA |
| Ga0214243_100484 | Ga0214243_1004843 | F013732 | MPAINLPNGQSAILYSREEVSERTARKISRAYMKAAGTAAKLTNLGFDDKNPETWTIFSDISDEDQNNLDGYQAELIAGMVKQWSLGDLPTADSALDLPKNVFEQLAEACANEYNQTPDFSPDIDPKAPIAD |
| Ga0214243_100484 | Ga0214243_1004847 | F063277 | MSIVAPFVYSGGMVEPYVSLAEVKFSPTAAAIDFTNLIEDASQAVQDRALYELIVRASSKADNYTMGVYGSLCATSNTENGRYYMNRMGQIVINPYFTPILAVESFSAGWGPGDGLQNITLSTSNCSIERTQFIITSQSTMGLYFGNLGIVGGNMQSGTEIFCQWSYINGWANTFTNSTSNAGATTMTVNNVMGIFPGMNLTIWDGQKDEYVQVSTSWTPGNTTLTFTNPLKYAHGSGVNVSALPASVKQAVIHFIVGMIKERGQGGLVLNEIGEPTAVSARTESSVTDEAMAYDLLDDFKQIWGRA |
| Ga0214243_101117 | Ga0214243_1011172 | F027395 | MSYNIIENTTIQFYTSQPFTSIGGTVVNPDNVKFSYSIQGQTEVSYTWVSPTGDPTGTIKQGSQGTGYFYANISTVGQPGTWSWSWYGYPSSGVDTTATQVAAQGTVVVSASDL |
| Ga0214243_101224 | Ga0214243_1012244 | F098526 | MAYSIFTAAETEKFYNSNPDVGVINRTGNTTGHKIVLNNITYSISYDQGSGMWSIYEHPNGTYDRQTRVLQRIHQAYTTYCCGIWQLGSFYCPFDVPHEIEDLMIKMIASCARYKFAKGVMQAYFYRSRSKSSSYQHDRILKAFIRNGFVDNSPETFNPNSGNMIKGLVRPCQPPKEKRATRAMLQQRLDTLLGVLHGNT |
| Ga0214243_101263 | Ga0214243_1012633 | F074309 | MTVFNKNSLTQVSGFDNPILSGELVWEQKAFWNLFMTNDAGVLPLTGATIDAQIIRRVLTNVIDTRNGLTFTIGDYTPTPTPITLTVTNINYTGGSFTLVIDDSAWGLMATDPGLDIADPNGIGYSGRIKISFPANGSTPAEDII |
| Ga0214243_101633 | Ga0214243_1016332 | F078138 | MIPAMRNARATHVDFGFLRGVIGSNPNFMPSNIDMVLERKGMFLFGEWKREDEEIKTGQKILLKELACIHRVLFITGYVDNIPHVSLIQQILPNGNLKVVGKSPADLIKYIQDWYKDAENND |
| Ga0214243_101969 | Ga0214243_1019694 | F096503 | EAQMFKLDYRTGRKLVWGTAAIVFLYVDVTAEGGISFWAAVYGLGTAVGVATFLAFVTK |
| Ga0214243_102302 | Ga0214243_1023021 | F006258 | MGINAFCKTGNTITFTAGVVAPTPVQVSSTTLGGNQYRIINAGSTLVFLGYGNDAATANTASANVTSTGLAFPLLAGTDEIL |
| Ga0214243_102501 | Ga0214243_1025011 | F088110 | MTDVRQNIVAWAKWAATNHAKFTYSEGPQRMSGIGNPGKLPVTAD |
| Ga0214243_102677 | Ga0214243_1026775 | F024029 | MNDHIWTAAGTDIEERWKAKYGWVRPSEQPEYQAKFKYYQELPLRKLDDVAKVRYEEVLKRNKVVRIK |
| Ga0214243_102894 | Ga0214243_1028941 | F013852 | FEGPILSGDNRFGPVRDVGYTDLVQTALLDFSVTAPGANYGGGSGVFVASNNIPNSAATIYTPQSGVYSTNGPTKASAPTADATTLVYRGVVFYLPYSCNITDVILDIGTVPKDSAGTPLAVTAIQPYVSNNFATSTGVYATFANISSPAAQRYTATYVGSQLTNSNATLQDFQNLQAGQEPAWFTQVVVTLKMTTTSAGLSSGQVEVTLRYNQNDMNIGNATTYPYGNFD |
| Ga0214243_103763 | Ga0214243_1037631 | F068205 | MTVVAGLVTPEGAWIGADSLSSTDDGLASLIATPKVGRFGNLLLGYSGSFRVGAMYFKVAGRSHNPTLEQLLESVKLPDDLKDDWELLAIEHGHLYEITSNSGPLEARKDHDGIAYGAIGSGAAPALGSLFTDHEDEGSLYQALEASAMHT |
| Ga0214243_103784 | Ga0214243_1037842 | F014107 | MADISTILAMSEQVTIMDQRLVGQAISRNQRISTSEIVTVIPFQFTFKPNSYQLYSQNRSLLANLRYYDKSLEQYLNFASTGWVNYIAYQGDMTSVQIAACQWQTAS |
| Ga0214243_104082 | Ga0214243_1040822 | F035607 | MAKTVSRSGDNGESTPVPVIDLGGHIEDHKADPADLSAARVATVTPTSFKGMKDIKTGDWIENLMDSSTVFSSPKGSFKLAAAGIHGSIQPIQEEIRQDAFVLRAVQRGRIKFLTEDEAMDKIADLRDESDTSESHIDRLRESLGAGASENNGMYKIPLPDEA |
| Ga0214243_105485 | Ga0214243_1054851 | F051645 | MEKSTSRSINDRFYTPLLYVVKKHGSLNASAQALGISQQRIFHWNKVKAIPDEWKVKLHKKYGVPYKSFFEQHEXVTHLKSLSL |
| Ga0214243_106465 | Ga0214243_1064651 | F008860 | NGNSHTSKGVMSAFVKSDTHQPLPGDIVFAHSNGLMGRAIRFGEMLRWRKGGHWNHACVVSRVDKDGTVYVIQAELKGVREARLDSVGQYVIIELPCGVNRNKVLAFTKAQVGSKYGILSILSIVFDIISPDWFPSVRMPRTWICSAVTGEALRYGGWLQNWDDLYCVTPAQLFDALADI |
| Ga0214243_106655 | Ga0214243_1066551 | F052345 | MDRRTREYNELVKMTPTTQELLSEEIDGEIYLYKSSPNCKICTTSDDLKNIIDSLLLFPKTYKEVLKAIEPIQDKLGIEGSERINYENIRNHQKRHLPFEKLMVREIVEKRAAEKNRSILDAGERLLTAEAFYEVIVAKGFEGIAQGYDKPTLTQTMYAMDMLTKLEKEGRDDYRPEELVNQLDMILTAIREVLPADMKEALFNKIEELQLGTAP |
| Ga0214243_106969 | Ga0214243_1069692 | F021463 | VVRLEVYSKNHAEDIKELRETTIDLKGTMHSIEKNLSQIKYIAIGALVVIVAQTIGLDKALRVLFGA |
| Ga0214243_107005 | Ga0214243_1070051 | F100249 | TITPTSAPAAVLPSGGNTSQSFVLGVTMSQPTVIAVPPIFSITAIGTSGTTLYVMPMPDQ |
| Ga0214243_107011 | Ga0214243_1070111 | F091219 | MQDMLKSRCKFVTLSGKYAQQKQVGWEVIFSELGFAGSGARKPRREL |
| Ga0214243_107260 | Ga0214243_1072601 | F075594 | LALRKLGVLELGSTPDPETIANASLALNLLIKQMATEGLKIWKVNELTVPFVQNKTKYTIGPATLTPTTDLDTAKPLKVIQAWIRNISVTPFIDTPIQLLSKQEYDILGSKFSTGTGNSMYANVRRDSTDLYMYLTPDYNTATTYVLYFVCQQPMEDINTGSQTPDFPTEWMNTLIWNLADQLAIEYSVPQNHRMEIAQRAKMYQDQLCDWDIESTSTFFQADMR |
| Ga0214243_107322 | Ga0214243_1073222 | F000926 | LHGQSVAQLEVLVRTAVFKSANALVGWLLQQAADRADAGYQPKAGQRRKGRETIGVQGIFGHFPLERDYYYHPGKDQGHHPADAALGLEVGYTPALAKLICLEGADEPTYLKAERHLEQTGGITVSAR |
| Ga0214243_107450 | Ga0214243_1074501 | F015336 | ISACQWETASAGKNLVLGSLPSISSTSYIVKAGDFCQVDRYAYIATADVMRGSGTTVTIPVHRTLLTTLVSPEYAVIGQYGTTVALGGNTYTGCTFPIILQQYPTYNLIPMTNDSFIQWSGPFKAFEAVL |
| Ga0214243_107828 | Ga0214243_1078282 | F099296 | ILTGPKGEQYSMPPEKFHELKDDNGDGICVPKKIIKLAKLADHDGVVNTSWGEPLHYKAGEDVIIRHGDNDYGVVKKDIFQQTYNIGK |
| Ga0214243_109347 | Ga0214243_1093472 | F104426 | MTMNSSGPISLAGTTAGQSIEIENGGNGTTQISLNCTAVRT |
| Ga0214243_110075 | Ga0214243_1100752 | F007405 | MVTQIGTAHSFTYDGAQLNIYHANKGEGLPKHDHIYSHATVCHAGSCLISLEGRSYTIDKNSTPLNLPAGEWHEIEAL |
| Ga0214243_110097 | Ga0214243_1100972 | F079515 | TTAIVGLPIRSDTAAEVVVNSGASQTTIGANTAFAANGFLPADRTTPSATTGDVRGTIDLANASGVNLTPSTGTNKYVFRQIPQAYNVQSATGLFGLTQYYNF |
| Ga0214243_110565 | Ga0214243_1105652 | F093755 | KTDASQYGKYLGITVTSNNPNYVLNGFEFEHELRVRF |
| Ga0214243_110636 | Ga0214243_1106361 | F020298 | ACSRRCKPCRSRRIMTTPNVYIPYPYPQSIEEVEADMNAIIYQPEVPQELQDQYKNFVSSPTNEADLDQAEANSDSMANE |
| Ga0214243_110746 | Ga0214243_1107461 | F027396 | MTEPSPKRKSRKQEVIPGKITWQILERLLNNYWEWYEIYLTTGNSDLKLNNGVTVNIYDILKGIDRLPPRQKQAVVLSCLENRKEVEVAKIMGFTKWSSQVG |
| Ga0214243_110987 | Ga0214243_1109871 | F026474 | TDAIANGKAKLAGNMDGLNDVVNIVLAAYSGVNLIHLGWQGWLGIIPIGVVGKITTERATKWSHKNIKEEN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |