Metagenome Family F100249

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F100249
Family Type	Metagenome
Number of Sequences	102
Average Sequence Length	48 residues
Representative Sequence	VLPTGGNSSQSFVLGVSMSQPTVIAVPPSFAITAIGTSGTTLYVMPMVDQN
Number of Associated Samples	77
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	5.88 %
% of genes from short scaffolds (< 2000 bps)	3.92 %
Associated GOLD sequencing projects	64
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (94.118 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater (59.804 % of family members)
Environment Ontology (ENVO)	Unclassified (89.216 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (88.235 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 43.14% Coil/Unstructured: 56.86%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF13884	Peptidase_S74	5.88
PF11134	Phage_stabilise	2.94
PF13392	HNH_3	0.98
PF00182	Glyco_hydro_19	0.98
PF11651	P22_CoatProtein	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG3179	Chitinase, GH19 family	Carbohydrate transport and metabolism [G]	0.98
COG3979	Chitodextrinase	Carbohydrate transport and metabolism [G]	0.98

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.12 %
All Organisms	root	All Organisms	5.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.12 %
Viruses	superkingdom	All Organisms → Viruses	4.90 %
cellular organisms	root	All Organisms → cellular organisms	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.12 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	4.90 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.12 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	4.90 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.12 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	4.90 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.12 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	4.90 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.12 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	4.90 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.12 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	4.90 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.98 %

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000439\|TBL_comb48_EPIDRAFT_1001710	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	15814	Open in IMG/M
3300003852\|Ga0031655_10184578	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	798	Open in IMG/M
3300004694\|Ga0065170_1028401	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	748	Open in IMG/M
3300020733\|Ga0214172_1030049	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	828	Open in IMG/M
3300025353\|Ga0208255_100401	All Organisms → cellular organisms → Bacteria → Proteobacteria	5707	Open in IMG/M
3300025382\|Ga0208256_1027669	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	825	Open in IMG/M

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	99.02%
Marine	Environmental → Aquatic → Marine	0.98%

Habitat	Taxonomy	Distribution
Lentic	Environmental → Aquatic → Freshwater → Lentic	90.20%
Lake	Environmental → Aquatic → Freshwater → Lake	7.84%
Lotic	Environmental → Aquatic → Freshwater → Lotic	0.98%
Coastal	Environmental → Aquatic → Marine → Coastal	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	60.78%
Hypolimnion	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion	15.69%
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	11.76%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	7.84%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	1.96%
Unclassified	Environmental → Aquatic → Freshwater → Lotic → Unclassified	0.98%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater	59.80%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater	15.69%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	11.76%
Freshwater Lake Hypolimnion	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake Hypolimnion	3.92%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	1.96%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	1.96%
Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Lentic	0.98%
Anoxic Zone Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater	0.98%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	0.98%
Marine Plankton	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Marine Plankton	0.98%
Marine	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine	0.98%

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000162	Freshwater microbial communities from Trout Bog Lake, WI - Practice 03JUN2009 hypolimnion	Environmental	Open in IMG/M
3300000177	Freshwater microbial communities from Trout Bog Lake, WI - Practice 18AUG2009 hypolimnion	Environmental	Open in IMG/M
3300000439	Trout Bog Lake June 7 2007 Epilimnion (Trout Bog Lake Combined Assembly 48 Epilimnion Samples, Aug 2012 Assem)	Environmental	Open in IMG/M
3300001851	Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM31, ROCA_DNA206_0.2um_MCP-S_C_3b	Environmental	Open in IMG/M
3300002092	Lentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI-B2 co-culture F-B6 metagenome	Environmental	Open in IMG/M
3300002933	Combined Assembly of freshwater hypolimnion microbial communities from Trout Bog Lake, Wisconsin, USA	Environmental	Open in IMG/M
3300003375	Freshwater actinobacteria microbial communities from Trout Bog Lake, Wisconsin, USA - enrichment TB-E6	Environmental	Open in IMG/M
3300003783	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH05Oct08	Environmental	Open in IMG/M
3300003785	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH06Jun08	Environmental	Open in IMG/M
3300003800	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH15Jul08	Environmental	Open in IMG/M
3300003805	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE27Jun08	Environmental	Open in IMG/M
3300003812	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH22Jun08	Environmental	Open in IMG/M
3300003823	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH18Aug09	Environmental	Open in IMG/M
3300003824	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH22May08	Environmental	Open in IMG/M
3300003852	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies -HBP12 HB	Environmental	Open in IMG/M
3300004095	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE03Jun09	Environmental	Open in IMG/M
3300004461	Marine viral communities from Newfoundland, Canada BC-2	Environmental	Open in IMG/M
3300004690	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE02Jul07 (version 2)	Environmental	Open in IMG/M
3300004694	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE17Sep08 (version 2)	Environmental	Open in IMG/M
3300004807	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE02Aug07	Environmental	Open in IMG/M
3300006072	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH12Aug09	Environmental	Open in IMG/M
3300006101	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE15Jun09	Environmental	Open in IMG/M
3300006104	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH12Aug09.1	Environmental	Open in IMG/M
3300006105	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE07Jul09	Environmental	Open in IMG/M
3300006106	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE25Jul07	Environmental	Open in IMG/M
3300006108	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH20Aug07	Environmental	Open in IMG/M
3300006115	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE27Jul09	Environmental	Open in IMG/M
3300006118	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH27Jul07	Environmental	Open in IMG/M
3300006120	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH25Aug08	Environmental	Open in IMG/M
3300006128	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE16Oct07	Environmental	Open in IMG/M
3300009175	Freshwater lake bacterial and archeal communities from Alinen Mustajarvi, Finland, to study Microbial Dark Matter (Phase II) - Alinen Mustajarvi 5m metaG	Environmental	Open in IMG/M
3300013094	Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES058 metaG	Environmental	Open in IMG/M
3300020681	Freshwater microbial communities from Trout Bog Lake, WI - 21JUL2009 hypolimnion	Environmental	Open in IMG/M
3300020728	Freshwater microbial communities from Trout Bog Lake, WI - 03JUN2009 epilimnion	Environmental	Open in IMG/M
3300020731	Freshwater microbial communities from Trout Bog Lake, WI - 27JUN2007 epilimnion	Environmental	Open in IMG/M
3300020733	Freshwater microbial communities from Trout Bog Lake, WI - 12JUL2007 epilimnion	Environmental	Open in IMG/M
3300021115	Freshwater microbial communities from Trout Bog Lake, WI - 31JUL2007 epilimnion	Environmental	Open in IMG/M
3300021116	Freshwater microbial communities from Trout Bog Lake, WI - 20SEP2008 hypolimnion	Environmental	Open in IMG/M
3300021121	Freshwater microbial communities from Trout Bog Lake, WI - 25JUL2007 epilimnion	Environmental	Open in IMG/M
3300021125	Freshwater microbial communities from Trout Bog Lake, WI - 11AUG2009 epilimnion	Environmental	Open in IMG/M
3300021131	Freshwater microbial communities from Trout Bog Lake, WI - 07JUL2009 epilimnion	Environmental	Open in IMG/M
3300021135	Freshwater microbial communities from Trout Bog Lake, WI - 03JUN2009 hypolimnion	Environmental	Open in IMG/M
3300021137	Freshwater microbial communities from Trout Bog Lake, WI - Practice 03JUN2009 hypolimnion	Environmental	Open in IMG/M
3300021142	Freshwater microbial communities from Trout Bog Lake, WI - 29JUL2008 epilimnion	Environmental	Open in IMG/M
3300021354	Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L221-5m	Environmental	Open in IMG/M
3300022555	Alinen_combined assembly	Environmental	Open in IMG/M
3300022602	Freshwater microbial communities from Trout Bog Lake, Vilas County, Wisconsin, United States - 30JULY2014 epilimnion	Environmental	Open in IMG/M
3300025316	Freshwater lake bacterial and archeal communities from Alinen Mustajarvi, Finland, to study Microbial Dark Matter (Phase II) - Alinen Mustajarvi 5m metaG (SPAdes)	Environmental	Open in IMG/M
3300025336	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE10Jul07 (SPAdes)	Environmental	Open in IMG/M
3300025353	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH06Jun08 (SPAdes)	Environmental	Open in IMG/M
3300025355	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE02Jul07 (SPAdes)	Environmental	Open in IMG/M
3300025368	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH24Jun08 (SPAdes)	Environmental	Open in IMG/M
3300025379	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE21Jul09 (SPAdes)	Environmental	Open in IMG/M
3300025382	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH22Jun08 (SPAdes)	Environmental	Open in IMG/M
3300025383	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE18Aug09 (SPAdes)	Environmental	Open in IMG/M
3300025387	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH20Aug07 (SPAdes)	Environmental	Open in IMG/M
3300025389	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH10Sep07 (SPAdes)	Environmental	Open in IMG/M
3300025401	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE29Jun09 (SPAdes)	Environmental	Open in IMG/M
3300025402	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH03Jun09 (SPAdes)	Environmental	Open in IMG/M
3300025403	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH23Jun09 (SPAdes)	Environmental	Open in IMG/M
3300025411	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE02Aug09 (SPAdes)	Environmental	Open in IMG/M
3300025421	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH27Jul07 (SPAdes)	Environmental	Open in IMG/M
3300025429	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE17Sep08 (SPAdes)	Environmental	Open in IMG/M
3300025437	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH28Sep08 (SPAdes)	Environmental	Open in IMG/M
3300025470	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH12Aug09 (SPAdes)	Environmental	Open in IMG/M
3300025648	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH12Aug09.1 (SPAdes)	Environmental	Open in IMG/M
3300025723	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE03Jun09 (SPAdes)	Environmental	Open in IMG/M
3300025777	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH13Jun08 (SPAdes)	Environmental	Open in IMG/M
3300025781	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH16Oct07 (SPAdes)	Environmental	Open in IMG/M
3300025838	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH12Aug08 (SPAdes)	Environmental	Open in IMG/M
3300027770	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027896	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies -HBP12 HB (SPAdes)	Environmental	Open in IMG/M
3300032117	Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18003	Environmental	Open in IMG/M
3300032560	Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18009	Environmental	Open in IMG/M
3300032665	Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18007	Environmental	Open in IMG/M
3300032676	Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18023	Environmental	Open in IMG/M
3300032677	Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18019	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
TB03JUN2009H_0142393	3300000162	Freshwater	SQSFVLGVAMSQPTVIAVPPSFAVTAIGTSGTLYVMPMVDQN*
TB18AUG2009H_0233922	3300000177	Freshwater	GNSSQSFVLGISMSQPTVIAVPPSFAITAIGTANTLYVLPMVDQN*
TBL_comb48_EPIDRAFT_100171024	3300000439	Freshwater	LGVTMSQPTVIAVPQIFSITTIGTSGTLYVMPMADQS*
TBL_comb48_EPIDRAFT_10249872	3300000439	Freshwater	LPSGGSSSQSFVLGVAMSQPTVLAVPPSFAITAIGTSGTLYVLPMVDQN*
TBL_comb48_EPIDRAFT_10458293	3300000439	Freshwater	PAAVLPSGGSSSQSFVLGVSMSQPTVIAVPPSFAITAIGTSGTLYVLPMVDQN*
RCM31_104048851	3300001851	Marine Plankton	TTTAPAAVLPTGGNSSNSFILGVAMSAPQVMVVPPQFAVTAIGAATTLYVMPMVDQN
JGI24218J26658_10007631	3300002092	Lentic	FVLGVSMSAPMVVAVPPDSFSVTTIGSTTSTLYVMPMSDQT*
G310J44882_100053725	3300002933	Freshwater	GTAAAAVLPTGGNSSQSFVLGVTMSQPTVIAVPPLFSITAIGTSGTTLYVMPMADQS*
JGI26470J50227_10267512	3300003375	Freshwater	GGNTSQSFVLGVSMSSPQVMVVPPIFSVTAIGTANTLYVMPMVDQN*
Ga0007850_10074102	3300003783	Freshwater	GNTSQSFVLGVAMSQPTVIAVPPSFAITAIGTSGTLYVLPMVDQN*
Ga0007851_1007841	3300003785	Freshwater	VQGVGSAPAAVLPTGGNSSQSFVLGVSMSQPTVIAVPQIFSITAIGTSGTLYVMPVADQS
Ga0007860_10152991	3300003800	Freshwater	TTASAAVLPTAGNSSQSFVLGVSMSQPTVLAVPPSFAITAIGTANTLYVLPMVDQN*
Ga0007838_10129331	3300003805	Freshwater	SSQSFVLGVTMSQPTVIAVPQIFSITTIGTSGTLYVMPMADQS*
Ga0007861_10036381	3300003812	Freshwater	TAPAAVLPTAGNSSQSFVLGVSMSQPTVLAVPPSFAITAVGTANTLYVLPMVDQN*
Ga0007861_10190361	3300003812	Freshwater	GSSSQSFVLGVAMSQPTVLAVPPSFAITAIGTSGTLYVLPMVDQN*
Ga0007875_10314812	3300003823	Freshwater	PAAVLPTGGNTSQSFVLGVSMSSPQVMVVPPVFSITAIGTANTLYVMPMVDQN*
Ga0007874_10154792	3300003824	Freshwater	STTAPAAVLPSGGNTSQSFVLGVAMSQPTVLAVSPSFAITAIGTSGTLYVLPMVDQN*
Ga0031655_101845783	3300003852	Freshwater Lake Sediment	SFVLGVAMSQPTVIAVPPSFAVTAIGTSGTLYVMPMVDQN*
Ga0007829_100755211	3300004095	Freshwater	SGTAPAAVLPTGGNSSQSFVLGVAMSQPTVIAVPQIFSITTIGTSGTLYVMPMADQS*
Ga0066223_10236231	3300004461	Marine	AFPTSTPNNTYILGVSMQEPMVFTVPNTFSVTAIGTSGTLYVTPVGDQS*
Ga0065175_10168171	3300004690	Freshwater	FVLGVAMSQPTVLAVPPSFAITAIGTSGTLYVLPMVDQN*
Ga0065170_10284013	3300004694	Freshwater	NSSQSFVLGVSMSQPTVLAVPPSFAITAVGTANTLYVLPMVDQN*
Ga0065170_10296231	3300004694	Freshwater	NSSQSFVLGVSMSQPTVLAVPPSFAITAVGTANTLYVMPMVDQN*
Ga0007809_101633681	3300004807	Freshwater	SSQSFVLGVSMSQPTVIAVPQIFSITTIGTSGTLYVMPMVDQN*
Ga0007809_102438901	3300004807	Freshwater	ANPAVLPSAGSSSQSFVLGVSISQPTVIAVPPSFAITAIGTSGTTLYVMPMVDQN*
Ga0007881_10180571	3300006072	Freshwater	AVLPTGGNSSQSFVLGVTMSQPTVIAVPQIFSITAIGTSGTLYVMPVADQS*
Ga0007881_10720543	3300006072	Freshwater	AVLPSGGNSSQSFVLGVAMSQPTVIAVPQIFSITTIGTSGTLYVMPMADQS*
Ga0007810_10575542	3300006101	Freshwater	TTAPAAVLPSGGSSSQSFVLGVAMSQPTVLAVPPSFAITAIGTSGTLYVLPMVDQN*
Ga0007810_10845653	3300006101	Freshwater	MSQPTVIAVPANGFNLSAVGTANTLYVMPVADQS*
Ga0007882_101469971	3300006104	Freshwater	GNTSTSFVLGISMSQPTVIAVPANGFNLSAVGTANTLYVMPVADQS*
Ga0007882_103036012	3300006104	Freshwater	TAPAAVLPTGGNSSQSFVLGVSMSQPTVIAVPPSFAITAIGTANTLYVLPMVDQN*
Ga0007819_10770933	3300006105	Freshwater	TPAVLPTAGNTSTSFVLGISMSQPTVIAVPANGFNLSAIGTANTLYVMPVADQS*
Ga0007833_10139551	3300006106	Freshwater	GNSSQSFVLGVSMSQPTVLAVPPSFAITAVGTANTLYVLPMVDQN*
Ga0007833_10918702	3300006106	Freshwater	VLPTGGNSSQSFVLGVAMSQPTVIAVPQIFSITTIGTSGTLYVMPMADQS*
Ga0007833_10951461	3300006106	Freshwater	GNSSQSFVLGVSMSQPTVLAVPPSFAITAVGTANTLYVMPMVDQN*
Ga0007862_10057103	3300006108	Freshwater	NTSQSFVLGVAMSQPTVLAVPPSFAITAIGTSGTLYVLPMVDQN*
Ga0007816_10973913	3300006115	Freshwater	GVAMSQPTVIAVPQIFSITTIGTSGTLYVMPMADQS*
Ga0007859_10291403	3300006118	Freshwater	QSFVLGISMSQPTVIAVPPSFAITAIGTANTLYVLPMVDQN*
Ga0007859_10436483	3300006118	Freshwater	GGNSSQSFVLGISMSQPTVIAVPPSFAITAIGTANTLYVLPMVDQN*
Ga0007859_10665211	3300006118	Freshwater	LPTAGNSSQSFVLGVSMSQPTVLAVPPSFAITAVGTANTLYVMPMVDQN*
Ga0007867_10155213	3300006120	Freshwater	ITPTPAVLPTAGNTSTSFVLGISMSQPTVIAVPANGFNLSAIGTANTLYVMPVADQS*
Ga0007867_10775841	3300006120	Freshwater	VLGISMSQPTVIAVPPSFAITAIGAANTLYVLPMVDQN*
Ga0007828_10102413	3300006128	Freshwater	PTGGNSSQSFVLGVSMSQPTVIAVPQIFSITAIGTSGTLYVMPVADQS*
Ga0073936_100801041	3300009175	Freshwater Lake Hypolimnion	VSMSSPQVMVVPPVFSITAIGTANTLYVMPMVDQN*
Ga0164297_100445462	3300013094	Freshwater	TGGNTSQSFVLGVTMSQPTVIAVPPIFSITAIGTSGTTLYVMPMADQS*
Ga0214253_1081103	3300020681	Freshwater	AAAVLPTGGNSSNSFVLGISMSQPTVIAVPPSFAITAIGTANTLYVLPMVDQN
Ga0214202_10388302	3300020728	Freshwater	VLPTGGNSSQSFVLGVSMSQPTVIAVPPSFAITAIGTSGTTLYVMPMVDQN
Ga0214170_10411773	3300020731	Freshwater	NTSTSFVLGISMSQPTVIAVPANGFNLSAVGTANTLYVMPVADQS
Ga0214172_10300491	3300020733	Freshwater	GGNSSQSFVLGVTMSQPTVIAVPPLFSITAIGTSGTTLYVMPMADQS
Ga0214174_10012614	3300021115	Freshwater	AAVLPTGGNSSQSFVLGISMSQPTVIAVPPSFAITAIGTANTLYVLPMVDQN
Ga0214174_1024743	3300021115	Freshwater	VLPTGGNSSQSFVLGVSMSQPTVIAVPQIFSITTIGTSGTLYVMPMVDQN
Ga0214243_1070051	3300021116	Freshwater	TITPTSAPAAVLPSGGNTSQSFVLGVTMSQPTVIAVPPIFSITAIGTSGTTLYVMPMPDQ
Ga0214173_1023263	3300021121	Freshwater	AVLPTGGNSSQSFVLGISMSQPTVIAVPPSFAITAIGTANTLYVLPMVDQN
Ga0214211_10125031	3300021125	Freshwater	AAVLPTGGNSSQSFVLGVAMSQPTVIAVPPVFSITAIGTSGTLYVMPMADQS
Ga0214206_10031804	3300021131	Freshwater	ISMSQPTVIAVPPSFAITAIGTSGTLYVLPMVDQN
Ga0214247_10316423	3300021135	Freshwater	TGSAPAAVLPTGGNSSQSFVLGVSMSQPTVIAVPQIFSITTIGTSGTLYVMPMVDQN
Ga0214165_10412751	3300021137	Freshwater	PAVLPSGGSSSQSFVLGVAMSQPTVLAVPPSFAITAIGTSGTLYVLPMVDQN
Ga0214192_11535391	3300021142	Freshwater	GSSSQSFVLGIAMSQPTVLAVPPSFAITAIGTSGTLYVLPMVDQN
Ga0194047_100838421	3300021354	Anoxic Zone Freshwater	TASAAVLPTGGNSSTSFVLGVAMSAPQVMVVPPSFSITAIGTANTLYVMPMVDQN
Ga0212088_100802781	3300022555	Freshwater Lake Hypolimnion	NTSQSFVLGVSMSSPQVMVVPPVFSVTAIGTANTLYVMPMVDQN
Ga0212088_105217053	3300022555	Freshwater Lake Hypolimnion	ISMSQPTVIAVPPSFAITAIGAANTLYVLPMVDQN
Ga0248169_1071371	3300022602	Freshwater	TPVVQGVGSAPAAVLPTGGNSSQSFVLGVAMSQPTVIAVPQIFSITTIGTSGTLYVMPMADQS
Ga0209697_101673451	3300025316	Freshwater Lake Hypolimnion	VSMSSPQVMVVPPVFSITAIGTANTLYVMPMVDQN
Ga0208619_1021722	3300025336	Freshwater	SSQSFVLGVTMSQPTVIAVPPSFAITAIGTSGTLYVMPMVDQN
Ga0208619_1042871	3300025336	Freshwater	AVLPSGGSSSQSFVLGVAMSQPTVLAVPPSFAITAIGTSGTLYVLPMVDQN
Ga0208255_1004011	3300025353	Freshwater	ISPVVQGVGSAPAAVLPTGGNSSQSFVLGVSMSQPTVIAVPQIFSITAIGTSGTLYVMPVADQS
Ga0208255_1089231	3300025353	Freshwater	VLGISMSQPTVIAVPPSFAITAIGTANTLYVLPMVDQN
Ga0208254_10054621	3300025355	Freshwater	ITITPTSAPAAVLPTGGNTSQSFVLGVTMSQPTVIAVPPIFSITAIGTSGTTLYVMPMADQS
Ga0208254_10113132	3300025355	Freshwater	NTSQSFVLGVAMSQPTVLAVPPSFAITAIGTSGTLYVLPMVDQN
Ga0208620_10125291	3300025368	Freshwater	NSSQSFVLGVAMSQPTVLAVPPSFAITAIGTSGTLYVLPMVDQN
Ga0208738_10126091	3300025379	Freshwater	FVLGISMSQPTVIAVPANGFNLSAVGTANTLYVMPVADQS
Ga0208256_10276691	3300025382	Freshwater	VVQGSGTAAAAVLPTGGNSSQSFVLGISMSQPTVIAVPPLFSITAIGTSGTTLYVMPMADQS
Ga0208250_10142313	3300025383	Freshwater	SGGNSSQSFVLGVAMSQPTVIAVPQIFSITTIGTSGTLYVMPMADQS
Ga0208250_10499231	3300025383	Freshwater	GTTTTAAAAVLPTGGNSSQSFVLGISMSQPTVIAVPPSFAITAIGTANTLYVLPMVDQN
Ga0207959_10127001	3300025387	Freshwater	AAVLPTGGNTSQSFVLGVAMSQPTVIAVPPSFAVTAIGTSGTLYVMPMVDQN
Ga0207959_10170841	3300025387	Freshwater	LPTGGNSSQSFVLGVAMSQPTVIAVPQIFSITTIGTSGTLYVMPMADQS
Ga0208257_10023071	3300025389	Freshwater	GNTSTSFVLGISMSQPTVIAVPANGFNLSAVGTANTLYVMPVADQS
Ga0207955_10394931	3300025401	Freshwater	STTAPAAVLPSGGSSSQSFVLGVAMSQPTVLAVPPSFAITAIGTSGTLYVLPMVDQN
Ga0208876_10195262	3300025402	Freshwater	TAPAAVLPSGGSSSQSFVLGVAMSQPTVLAVPPSFAITAIGTSGTLYVLPMVDQN
Ga0208745_10200951	3300025403	Freshwater	PSGGNTSQSFVLGVAMSQPTVLAVPPSFAITAIGTSGTLYVLPMVDQN
Ga0208865_10739442	3300025411	Freshwater	FVLGVAMSQPTVIAVPQIFSITTIGTSGTLYVMPMADQS
Ga0207958_10089101	3300025421	Freshwater	GISMSQPTVIAVPPSFAITAIGTANTLYVLPMVDQN
Ga0208500_10011108	3300025429	Freshwater	TTTAPAAVLPTAGNSSQSFVLGVSMSQPTVLAVPPSFAITAVGTANTLYVLPMVDQN
Ga0208500_10147851	3300025429	Freshwater	TTTAPAAVLPTAGNSSQSFVLGVSMSQPTVLAVPPSFAITAVGTANTLYVMPMVDQN
Ga0208742_10654271	3300025437	Freshwater	AVLPTAGNTSTSFVLGISMSQPTVIAVPANGFNLSAIGTANTLYVMPVADQS
Ga0208389_10123591	3300025470	Freshwater	AAVLPSGGNSSQSFVLGVAMSQPTVIAVPQIFSITTIGTSGTLYVMPMADQS
Ga0208507_11518143	3300025648	Freshwater	AGNTSTSFVLGISMSQPTVIAVPANGFNLSAVGTANTLYVMPVADQS
Ga0208741_100821272	3300025723	Freshwater	TTTTASAAVLPTGGNTSQSFVLGVAMSQPTVIAVPPSFAVTAIGTSGTLYVMPMVDQN
Ga0208110_10016641	3300025777	Freshwater	VVQGSGTAPAAVLPSGGNSSQSFVLGVAMSQPTVIAVPQIFSITTIGTSGTLYVMPMADQ
Ga0208386_10119773	3300025781	Freshwater	APAAVLPTGGNTSQSFVLGVAMSQPTVIAVPPSFAITAIGTSGTLYVMPMVDQN
Ga0208872_11136563	3300025838	Freshwater	STSFVLGISMSQPTVIAVPANGFNLSAVGTANTLYVMPVADQS
Ga0209086_104529611	3300027770	Freshwater Lake	VLGIAMQQPMVISVPQTFSLTTIGTSGTLYVTPVGDQS
Ga0209777_107738512	3300027896	Freshwater Lake Sediment	TMSQPTVIAVPPLFSITAIGTTGTTLYVMPMADQS
Ga0316218_12208742	3300032117	Freshwater	LPTAGNSSQSFVLGVSMSQPTVIAVPPSFAITAVGTANTLYVLPMIDQN
Ga0316218_12284261	3300032117	Freshwater	AAVLPSGGSSSQSFVLGVAMSQPTVLAVPPSFAITAIGTSGTLYVLPMVDQN
Ga0316218_13079012	3300032117	Freshwater	SQSFVLGVTMSQPTVIAVPPIFSITAIGTSGTTLYVMPMADQS
Ga0316223_11485213	3300032560	Freshwater	PVVQGVGSAPAAVLPTGGNSSQSFVLGVTMSQPTVIAVPQIFSITAIGTSGTLYVMPVADQS
Ga0316221_10266351	3300032665	Freshwater	FVLGVTMSQPTVIAVPQIFSITAIGTSGTLYVMPVADQS
Ga0316229_10280231	3300032676	Freshwater	LGVAMSQPTVIAVPPSFAVTAIGTSGTLYVMPMVDQN
Ga0316229_12084381	3300032676	Freshwater	AVLPTGGNSSQSFVLGVTMSQPTVIAVPPLFSITAIGTTGTTLYVMPMADQS
Ga0316227_10030971	3300032677	Freshwater	LPSGGSSSQSFVLGVAMSQPTVLAVPPSFAITAIGTSGTLYVLPMVDQN
Ga0316227_10527601	3300032677	Freshwater	AAAVLPTGGNSSQSFVLGVTMSQPTVIAVPPLFSITAIGTTGTTLYVMPMADQS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F100249

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences