Sample 3300020156

Overview

Basic Information
IMG/M Taxon OID	3300020156 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0128792 \| Gp0220311 \| Ga0196970
Sample Name	Soil microbial communities from Anza Borrego desert, Southern California, United States - S1+v_5-13C
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	287312560
Sequencing Scaffolds	18
Novel Protein Genes	20
Associated Families	19

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	3
Not Available	3
All Organisms → cellular organisms → Bacteria	4
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Systems Level Insights Into Methane Cycling In Arid And Semi-Arid Ecosystems
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Sand → Desert → Soil → Systems Level Insights Into Methane Cycling In Arid And Semi-Arid Ecosystems

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	desert biome → desert → soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Location Information
Location	USA: California
Coordinates	Lat. (^o)	33.3049	Long. (^o)	-116.2547	Alt. (m)	N/A	Depth (m)	0
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F003605	Metagenome / Metatranscriptome	477	Y
F005665	Metagenome / Metatranscriptome	393	Y
F007590	Metagenome / Metatranscriptome	348	Y
F008527	Metagenome	332	Y
F013725	Metagenome / Metatranscriptome	269	Y
F018997	Metagenome / Metatranscriptome	232	Y
F020734	Metagenome / Metatranscriptome	222	Y
F023249	Metagenome	211	Y
F032486	Metagenome / Metatranscriptome	180	Y
F036406	Metagenome	170	Y
F056709	Metagenome / Metatranscriptome	137	Y
F064351	Metagenome	128	Y
F067178	Metagenome	126	Y
F069970	Metagenome	123	Y
F077150	Metagenome / Metatranscriptome	117	Y
F093572	Metagenome / Metatranscriptome	106	Y
F094368	Metagenome	106	Y
F100738	Metagenome / Metatranscriptome	102	Y
F102900	Metagenome / Metatranscriptome	101	Y

Family

Category

Number of Sequences

3D Structure?

F003605

Metagenome / Metatranscriptome

477

F005665

Metagenome / Metatranscriptome

393

F007590

Metagenome / Metatranscriptome

348

F008527

Metagenome

332

F013725

Metagenome / Metatranscriptome

269

F018997

Metagenome / Metatranscriptome

232

F020734

Metagenome / Metatranscriptome

222

F023249

Metagenome

211

F032486

Metagenome / Metatranscriptome

180

F036406

Metagenome

170

F056709

Metagenome / Metatranscriptome

137

F064351

Metagenome

128

F067178

Metagenome

126

F069970

Metagenome

123

F077150

Metagenome / Metatranscriptome

117

F093572

Metagenome / Metatranscriptome

106

F094368

Metagenome

106

F100738

Metagenome / Metatranscriptome

102

F102900

Metagenome / Metatranscriptome

101

Scaffold	Taxonomy	Length	IMG/M Link
Ga0196970_1000447	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	48044	Open in IMG/M
Ga0196970_1000682	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	34456	Open in IMG/M
Ga0196970_1009691	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2869	Open in IMG/M
Ga0196970_1017280	Not Available	1869	Open in IMG/M
Ga0196970_1019657	All Organisms → cellular organisms → Bacteria	1708	Open in IMG/M
Ga0196970_1021059	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1622	Open in IMG/M
Ga0196970_1021973	All Organisms → cellular organisms → Bacteria	1571	Open in IMG/M
Ga0196970_1022391	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1551	Open in IMG/M
Ga0196970_1025947	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	1394	Open in IMG/M
Ga0196970_1026702	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1366	Open in IMG/M
Ga0196970_1028359	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1308	Open in IMG/M
Ga0196970_1040141	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1017	Open in IMG/M
Ga0196970_1051135	Not Available	854	Open in IMG/M
Ga0196970_1060041	Not Available	761	Open in IMG/M
Ga0196970_1061403	All Organisms → cellular organisms → Bacteria	748	Open in IMG/M
Ga0196970_1074100	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	657	Open in IMG/M
Ga0196970_1100099	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	534	Open in IMG/M
Ga0196970_1105359	All Organisms → cellular organisms → Bacteria	516	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0196970_1000447

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes

48044

Open in IMG/M

Ga0196970_1000682

All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae

34456

Open in IMG/M

Ga0196970_1009691

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia

2869

Open in IMG/M

Ga0196970_1017280

Not Available

1869

Open in IMG/M

Ga0196970_1019657

All Organisms → cellular organisms → Bacteria

1708

Open in IMG/M

Ga0196970_1021059

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia

1622

Open in IMG/M

Ga0196970_1021973

All Organisms → cellular organisms → Bacteria

1571

Open in IMG/M

Ga0196970_1022391

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia

1551

Open in IMG/M

Ga0196970_1025947

All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium

1394

Open in IMG/M

Ga0196970_1026702

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

1366

Open in IMG/M

Ga0196970_1028359

All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales

1308

Open in IMG/M

Ga0196970_1040141

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium

1017

Open in IMG/M

Ga0196970_1051135

Not Available

854

Open in IMG/M

Ga0196970_1060041

Not Available

761

Open in IMG/M

Ga0196970_1061403

All Organisms → cellular organisms → Bacteria

748

Open in IMG/M

Ga0196970_1074100

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

657

Open in IMG/M

Ga0196970_1100099

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides

534

Open in IMG/M

Ga0196970_1105359

All Organisms → cellular organisms → Bacteria

516

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0196970_1000447	Ga0196970_100044736	F069970	MNTGKYSQAIKIGDRVTFDNDRVADFKAETSMDNKEIQQYQKLVLAGIDQVGVVKGFMGNLTNVSYPDGWELPVPAKYLVVLPKSDE
Ga0196970_1000682	Ga0196970_100068228	F036406	MNVSEFTETYARRADDELLALWADRSTLVPEAVIALESELRRRELNKQNAFRIKKRRDALAAREKKGFLINQVAAAKYERSMRHFVGWEEPEFYSPYSGRDIRNTFAYIRHKYRVWKAFRDHTGRWPVYSIWFHFLSWIVFVALVAAVFVWVEAHSWGDGWSFVAIAICILSLLGARSLGARLMRKLDWKRCGTYPPPACRN
Ga0196970_1002700	Ga0196970_10027002	F018997	MEQLRKQPELMERFQTILEISSSADGPIKTADEIEGLLIEEMRRLGNTTMGTWAAGAEERLVKQFKEEHPSARARKKKR
Ga0196970_1009691	Ga0196970_10096912	F056709	MKSLQQHSPHEVHKQLHLRMQRSGLSTVRVHVTRKAGKLQFHFTGSDEEVKKAEKILADW
Ga0196970_1017280	Ga0196970_10172805	F077150	MSVIYTHLTYEQYKSLQEQMKAFSETTHKSEGGFYHKSIRLKIDESLIMEFHGPLVGGYGHLEKSGVKENE
Ga0196970_1019657	Ga0196970_10196572	F008527	MDLTPCAQLAQELSHSQHQRISVVRWQNDVKLTSMKTLPKMEISDELDAHINEGIRVSELCKADVIRQALRIGLPLFASRFQPPPLWLEERILEALAEPAEPTSMKQFEKTMTAIANGR
Ga0196970_1021059	Ga0196970_10210593	F102900	MLHEKTGQLLDRARQGERFRIVRQGRAEAFLIPAGEEVDPEWPEIMGEVWKAQGRPGGKRPNPILKERKARNYAGRLR
Ga0196970_1021059	Ga0196970_10210594	F093572	MPVVYADTSALFAVFHPRDEFAAPVTAAVQKVSPDFVYWPFLRYELRHNLRQARVDSYGELAWKALRAAERTQARLRWQPDLRCDSVVESADEFSGQRALEFSAGSADFLHVSAACRLHRLSAVDEFWTCDSEQSKVAKAAGLKVRLFTI
Ga0196970_1021973	Ga0196970_10219733	F032486	QATLKEMQRLSRQVLFETLPHPPRRKRLGKKALGLM
Ga0196970_1022391	Ga0196970_10223912	F005665	MKTVTVREFYHNAGLVDGLAEGKQLVVTANGKPKFVVSKSTRPKMTRKLAEARSVGNSKASSFDGTAFLVSLKK
Ga0196970_1025947	Ga0196970_10259472	F100738	LAQSIRIEDEAERLVALQALETFRALRQAVKAAPHGKGLATVEAVIRDQGFDHLSTMYQQAVREHPESQKRGPAVSPVNAGKTPPSAV
Ga0196970_1026702	Ga0196970_10267021	F067178	MVASEVAIAVSIELLLRRTGLALAAVLWWRSLLALALLALYLRPGRPDWVPRVPQLAFIRIFTGGLTFVGWFGAIGTLSARVTAAILLLDSLVLAYVRGERRPYERRTIAVLAVALLIFAAQAVREPGTVTSVPRGLMFLGIAIFSRAASYKVWERAQGREEHTFWLIAPALVGGALGGLVLGRFTVQPVSAPMMLLLALVAAIGLIGYFYMNEVMRLVGAFYMRVIELWQVPMLWAIHLLTDKA
Ga0196970_1028359	Ga0196970_10283593	F094368	MPDRTACLDPEVKPPDYRVPRGRSGVGAQTALDTLLRDLERVRLAREAYGDLPAASEQQQFRF
Ga0196970_1040141	Ga0196970_10401412	F007590	MEQAEDPQGRYREQIAVAKRLLEQKEQWADRVEWEVVKSGDGWEVIAWRIEHPERKGPSRYLPWGYSVIQLDSRMVAVGYRRKG
Ga0196970_1051135	Ga0196970_10511352	F064351	VMTMLSPNQGATANGLSAVCSSVAGVRERTVRSTAAAEAVAELGR
Ga0196970_1060041	Ga0196970_10600412	F077150	MSVIYTHLTYEQYKSLQEQMKAFSETTHKSEGGFYHKSIRLKIDESLIMEFHGPLVGGYGHLEKSEVKENE
Ga0196970_1061403	Ga0196970_10614032	F013725	MKMYRNRTLAKGQIWKTKVADFEIVGLGKRLIHYKVIRQFGSKQVSRQLSGIEAMENYLKNNAARLVKGASAN
Ga0196970_1074100	Ga0196970_10741002	F003605	MAIGDAAAAAGYPLVPDSGEEGKVKWGARELNRTRDFIANLAGILPASKSGFRSSSGISSGTAEPTGGTDGDIYFKILP
Ga0196970_1100099	Ga0196970_11000992	F020734	VSLLSEVLLVSGVALDLVGAGVLSHAHNAESIVELREEIGEEGSAVGEPDAISTHAQLLAEKRIGFLLLTVGLVLYLCGLVTKSPEGVATMGLVAVGVVVAGLITVVAFTRVVGSRVRRQVEAAAERRDPDRLPEQ
Ga0196970_1105359	Ga0196970_11053591	F023249	KPLADRLEARLGGNKFKANTVLAIKLARAVYFMLKGKTVFDADRLVAALTNK

Scaffold ID

Protein ID

Family

Sequence

Ga0196970_1000447

Ga0196970_100044736

F069970

MNTGKYSQAIKIGDRVTFDNDRVADFKAETSMDNKEIQQYQKLVLAGIDQVGVVKGFMGNLTNVSYPDGWELPVPAKYLVVLPKSDE

Ga0196970_1000682

Ga0196970_100068228

F036406

MNVSEFTETYARRADDELLALWADRSTLVPEAVIALESELRRRELNKQNAFRIKKRRDALAAREKKGFLINQVAAAKYERSMRHFVGWEEPEFYSPYSGRDIRNTFAYIRHKYRVWKAFRDHTGRWPVYSIWFHFLSWIVFVALVAAVFVWVEAHSWGDGWSFVAIAICILSLLGARSLGARLMRKLDWKRCGTYPPPACRN

Ga0196970_1002700

Ga0196970_10027002

F018997

MEQLRKQPELMERFQTILEISSSADGPIKTADEIEGLLIEEMRRLGNTTMGTWAAGAEERLVKQFKEEHPSARARKKKR

Ga0196970_1009691

Ga0196970_10096912

F056709

MKSLQQHSPHEVHKQLHLRMQRSGLSTVRVHVTRKAGKLQFHFTGSDEEVKKAEKILADW

Ga0196970_1017280

Ga0196970_10172805

F077150

MSVIYTHLTYEQYKSLQEQMKAFSETTHKSEGGFYHKSIRLKIDESLIMEFHGPLVGGYGHLEKSGVKENE

Ga0196970_1019657

Ga0196970_10196572

F008527

MDLTPCAQLAQELSHSQHQRISVVRWQNDVKLTSMKTLPKMEISDELDAHINEGIRVSELCKADVIRQALRIGLPLFASRFQPPPLWLEERILEALAEPAEPTSMKQFEKTMTAIANGR

Ga0196970_1021059

Ga0196970_10210593

F102900

MLHEKTGQLLDRARQGERFRIVRQGRAEAFLIPAGEEVDPEWPEIMGEVWKAQGRPGGKRPNPILKERKARNYAGRLR

Ga0196970_1021059

Ga0196970_10210594

F093572

MPVVYADTSALFAVFHPRDEFAAPVTAAVQKVSPDFVYWPFLRYELRHNLRQARVDSYGELAWKALRAAERTQARLRWQPDLRCDSVVESADEFSGQRALEFSAGSADFLHVSAACRLHRLSAVDEFWTCDSEQSKVAKAAGLKVRLFTI

Ga0196970_1021973

Ga0196970_10219733

F032486

QATLKEMQRLSRQVLFETLPHPPRRKRLGKKALGLM

Ga0196970_1022391

Ga0196970_10223912

F005665

MKTVTVREFYHNAGLVDGLAEGKQLVVTANGKPKFVVSKSTRPKMTRKLAEARSVGNSKASSFDGTAFLVSLKK

Ga0196970_1025947

Ga0196970_10259472

F100738

LAQSIRIEDEAERLVALQALETFRALRQAVKAAPHGKGLATVEAVIRDQGFDHLSTMYQQAVREHPESQKRGPAVSPVNAGKTPPSAV

Ga0196970_1026702

Ga0196970_10267021

F067178

MVASEVAIAVSIELLLRRTGLALAAVLWWRSLLALALLALYLRPGRPDWVPRVPQLAFIRIFTGGLTFVGWFGAIGTLSARVTAAILLLDSLVLAYVRGERRPYERRTIAVLAVALLIFAAQAVREPGTVTSVPRGLMFLGIAIFSRAASYKVWERAQGREEHTFWLIAPALVGGALGGLVLGRFTVQPVSAPMMLLLALVAAIGLIGYFYMNEVMRLVGAFYMRVIELWQVPMLWAIHLLTDKA

Ga0196970_1028359

Ga0196970_10283593

F094368

MPDRTACLDPEVKPPDYRVPRGRSGVGAQTALDTLLRDLERVRLAREAYGDLPAASEQQQFRF

Ga0196970_1040141

Ga0196970_10401412

F007590

MEQAEDPQGRYREQIAVAKRLLEQKEQWADRVEWEVVKSGDGWEVIAWRIEHPERKGPSRYLPWGYSVIQLDSRMVAVGYRRKG

Ga0196970_1051135

Ga0196970_10511352

F064351

VMTMLSPNQGATANGLSAVCSSVAGVRERTVRSTAAAEAVAELGR

Ga0196970_1060041

Ga0196970_10600412

F077150

MSVIYTHLTYEQYKSLQEQMKAFSETTHKSEGGFYHKSIRLKIDESLIMEFHGPLVGGYGHLEKSEVKENE

Ga0196970_1061403

Ga0196970_10614032

F013725

MKMYRNRTLAKGQIWKTKVADFEIVGLGKRLIHYKVIRQFGSKQVSRQLSGIEAMENYLKNNAARLVKGASAN

Ga0196970_1074100

Ga0196970_10741002

F003605

MAIGDAAAAAGYPLVPDSGEEGKVKWGARELNRTRDFIANLAGILPASKSGFRSSSGISSGTAEPTGGTDGDIYFKILP

Ga0196970_1100099

Ga0196970_11000992

F020734

VSLLSEVLLVSGVALDLVGAGVLSHAHNAESIVELREEIGEEGSAVGEPDAISTHAQLLAEKRIGFLLLTVGLVLYLCGLVTKSPEGVATMGLVAVGVVVAGLITVVAFTRVVGSRVRRQVEAAAERRDPDRLPEQ

Ga0196970_1105359

Ga0196970_11053591

F023249

KPLADRLEARLGGNKFKANTVLAIKLARAVYFMLKGKTVFDADRLVAALTNK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300020156: Soil microbial communities from Anza Borrego desert, Southern California, United States - S1+v_5-13C

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences