Metagenome Family F094368

Overview

Basic Information

• Family ID: F094368
• Family Type: Metagenome
• Number of Sequences: 106
• Average Sequence Length: 63 residues
• Representative Sequence: MADRIPYLDAEVKPPEYRVPRGRSGVGAQSALETLLRDLERIRRAKEAYGDLPRQPEHWQFRF
• Number of Associated Samples: 66
• Number of Associated Scaffolds: 106

Quality Assessment

• Transcriptomic Evidence: No
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 33.96 %
• % of genes near scaffold ends (potentially truncated): 24.53 %
• % of genes from short scaffolds (< 2000 bps): 82.08 %
• Associated GOLD sequencing projects: 64
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.39

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (91.509 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil (24.528 % of family members)
• Environment Ontology (ENVO): Unclassified (31.132 % of family members)
• Earth Microbiome Project Ontology (EMPO): Host-associated → Plant → Plant rhizosphere (45.283 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 27.47%
  β-sheet: 0.00%
  Coil/Unstructured: 72.53%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF01814	Hemerythrin	13.21
PF00005	ABC_tran	5.66
PF08002	DUF1697	4.72
PF00072	Response_reg	3.77
PF04264	YceI	3.77
PF04020	Phage_holin_4_2	3.77
PF13628	DUF4142	2.83
PF07519	Tannase	2.83
PF00924	MS_channel	1.89
PF00903	Glyoxalase	1.89

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG3797	Uncharacterized conserved protein, DUF1697 family	Function unknown [S]	4.72
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.77
COG1950	Uncharacterized membrane protein YvlD, DUF360 family	Function unknown [S]	3.77
COG2353	Polyisoprenoid-binding periplasmic protein YceI	General function prediction only [R]	3.77
COG0668	Small-conductance mechanosensitive channel	Cell wall/membrane/envelope biogenesis [M]	1.89
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	1.89
COG3264	Small-conductance mechanosensitive channel MscK	Cell wall/membrane/envelope biogenesis [M]	1.89
COG0715	ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.94
COG0726	Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family	Cell wall/membrane/envelope biogenesis [M]	0.94
COG1914	Mn2+ or Fe2+ transporter, NRAMP family	Inorganic ion transport and metabolism [P]	0.94

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	91.51 %
Unclassified	root	N/A	8.49 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	91.51 %
Unclassified	root	N/A	8.49 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	91.51 %
Unclassified	root	N/A	8.49 %

Level 4

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.94 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	81.13 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.94 %
Unclassified	root	N/A	8.49 %

Level 5

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.94 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	66.98 %
Unclassified	root	N/A	8.49 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.94 %

Level 6

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.94 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.94 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	65.09 %
Unclassified	root	N/A	8.49 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	0.94 %

Level 7

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.94 %
Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_64_12	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_64_12	0.94 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	52.83 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.94 %
Unclassified	root	N/A	8.49 %

Level 8

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.94 %
Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_64_12	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_64_12	0.94 %
Polaromonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Polaromonas	1.89 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.94 %
Ramlibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter	20.75 %
Unclassified	root	N/A	8.49 %
unclassified Comamonadaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → unclassified Comamonadaceae	1.89 %
Variovorax	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax	1.89 %

Level 9

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.94 %
Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_64_12	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_64_12	0.94 %
Comamonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → unclassified Comamonadaceae → Comamonadaceae bacterium	1.89 %
Pseudonocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	0.94 %
Ramlibacter agri	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → Ramlibacter agri	0.94 %
Ramlibacter ginsenosidimutans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → Ramlibacter ginsenosidimutans	0.94 %
Ramlibacter monticola	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → Ramlibacter monticola	1.89 %
Ramlibacter tataouinensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → Ramlibacter tataouinensis	2.83 %
Unclassified	root	N/A	8.49 %
unclassified Polaromonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Polaromonas → unclassified Polaromonas	1.89 %
unclassified Ramlibacter	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → unclassified Ramlibacter	3.77 %
Variovorax paradoxus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → Variovorax paradoxus	0.94 %

Level 10

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.94 %
Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_64_12	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_64_12	0.94 %
Comamonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → unclassified Comamonadaceae → Comamonadaceae bacterium	1.89 %
Polaromonas sp. CG9_12	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Polaromonas → unclassified Polaromonas → Polaromonas sp. CG9_12	0.94 %
Polaromonas sp. OV174	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Polaromonas → unclassified Polaromonas → Polaromonas sp. OV174	0.94 %
Pseudonocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	0.94 %
Ramlibacter agri	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → Ramlibacter agri	0.94 %
Ramlibacter ginsenosidimutans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → Ramlibacter ginsenosidimutans	0.94 %
Ramlibacter monticola	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → Ramlibacter monticola	1.89 %
Ramlibacter sp. B156	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → unclassified Ramlibacter → Ramlibacter sp. B156	3.77 %
Ramlibacter tataouinensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → Ramlibacter tataouinensis	2.83 %
Unclassified	root	N/A	8.49 %
Variovorax paradoxus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → Variovorax paradoxus	0.94 %

Associated Scaffolds

Scaffold	Taxonomy	Length
(restricted) 3300031825|Ga0255338_1014652	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	4623
2228664021|ICCgaii200_c0776972	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	595
3300000033|ICChiseqgaiiDRAFT_c0663804	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	592
3300000156|NODE_c0485587	All Organisms → cellular organisms → Bacteria	977
3300000156|NODE_c0658071	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2422
3300000956|JGI10216J12902_103706826	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter	1199
3300000956|JGI10216J12902_105916314	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter	845
3300003324|soilH2_10231410	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1261
3300003792|Ga0055540_1008144	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	3820
3300004463|Ga0063356_100063683	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → Ramlibacter tataouinensis	3794

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Engineered	Engineered	1.89%
Environmental	Environmental	51.89%
Host-Associated	Host-Associated	46.23%

Class

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	46.23%
Solid Waste	Engineered → Solid Waste	1.89%
Terrestrial	Environmental → Terrestrial	51.89%

Category

Habitat	Taxonomy	Distribution
Grass	Engineered → Solid Waste → Grass	1.89%
Peat	Environmental → Terrestrial → Peat	0.94%
Rhizoplane	Host-Associated → Plants → Rhizoplane	11.32%
Rhizosphere	Host-Associated → Plants → Rhizosphere	28.30%
Roots	Host-Associated → Plants → Roots	6.60%
Soil	Environmental → Terrestrial → Soil	50.94%

Type

Habitat	Taxonomy	Distribution
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	2.83%
Composting	Engineered → Solid Waste → Grass → Composting	1.89%
Endophytes	Host-Associated → Plants → Roots → Endophytes	3.77%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	6.60%
Loam	Environmental → Terrestrial → Soil → Loam	1.89%
Sand	Environmental → Terrestrial → Soil → Sand	2.83%
Soil	Host-Associated → Plants → Rhizosphere → Soil	15.09%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	45.28%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	13.21%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.72%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.94%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.94%

Subtype

Habitat	Taxonomy	Distribution
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	24.53%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.89%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.94%
Bioreactor	Engineered → Solid Waste → Grass → Composting → Bioreactor	1.89%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	1.89%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.94%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.94%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.72%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	15.09%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	13.21%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	13.21%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	6.60%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.72%
Unclassified	Host-Associated → Plants → Roots → Endophytes → Unclassified	3.77%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	2.83%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.94%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.94%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.94%

Habitat

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.94%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	2.83%
Arabidopsis Root	Host-Associated → Plants → Roots → Endophytes → Unclassified → Arabidopsis Root	3.77%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	2.83%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	7.55%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	4.72%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	4.72%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.94%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	2.83%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.77%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	5.66%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.89%
Sandy Soil	Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil	0.94%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	24.53%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.55%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.72%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	1.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.94%
Sugar Cane Bagasse Incubating Bioreactor	Engineered → Solid Waste → Grass → Composting → Bioreactor → Sugar Cane Bagasse Incubating Bioreactor	1.89%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.94%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.94%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.94%
Termite Nest	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Termite Nest	2.83%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.94%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.94%

Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OID	Sample Name	Habitat Type
2228664021	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental
3300000156	Sugar cane bagasse incubating bioreactor microbial communities from Sao Carlos, Brazil, that are aerobic and semianaerobic	Engineered
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental
3300003324	Sugarcane bulk soil Sample H2	Environmental
3300003792	Arabidopsis rhizosphere microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2	Host-Associated
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
ICCgaii200_07769722	2228664021	Soil	MPDRLPTLDPEVKPPDYRVPRGRSGVGAESALETLMKDLERVRKAKEAWGELPDAIDSRQFRF
ICChiseqgaiiDRAFT_06638041	3300000033	Soil	MPDRLPTLDPEVXPPDFRVPRGRSGVGAESALETLMKDLERVRKAKEAWGELPDAIDSRQFRF*
NODE_04855872	3300000156	Sugar Cane Bagasse Incubating Bioreactor	MPERIVYLDPEVKPPEYRVPRGRSGVGAQSALETLLKDLERIRRAREAYGDAPRANEHLQFRF*
NODE_06580712	3300000156	Sugar Cane Bagasse Incubating Bioreactor	MSQSIPFLDPEVKPPDYRVPRGRSGQGSKSALETLLKDIDRVQRAKDAYGDLPKRPDGPFRF*
JGI10216J12902_1037068261	3300000956	Soil	MAGVVAFTMDPIPFLDPEVKPPEYRVPRGRSGVGAQSALEILLQDLERIRRAKEAYGEPPQRQETLQFRF*
JGI10216J12902_1059163142	3300000956	Soil	MQEPILFLDPEVKPPEFRVPRGRSGIGAQSALETLLSDLERIRKAKEAYAQLFQDIEQAVLRH*
soilH2_102314103	3300003324	Sugarcane Root And Bulk Soil	MPQPIPYLDPEVKPPDYRVPRGRSGEGSKSALETLLKDIDRIQRAKEAWGDLPQRPEGGWRF*
Ga0055540_10081443	3300003792	Arabidopsis Root	MAQPIPFLDPEVKPPDYRVPRGRSGHGAKSALETLLKDLDRVRRAKEAYGDLPKRPDSSLRY*
Ga0063356_1000636836	3300004463	Arabidopsis Thaliana Rhizosphere	MEPSLQPDPEVKPPDYRVPRGRSGAGASSAFLQLMKDLERVQRAKEYYGDLPPRKPAPPA
Ga0063356_1028023012	3300004463	Arabidopsis Thaliana Rhizosphere	MQQPIPFLDPEVKPPDYRVPRGRSGQGSKSALETLLKDLDRVRRAKEAYGDLPKPPDSAFRLA*
Ga0063356_1063128621	3300004463	Arabidopsis Thaliana Rhizosphere	MADAAIPWPWPDPEVRPPEYRVPRGRSGVGAQSALDTLLQDLERIRRAKEAYGELPLPGHVLQFRF*
Ga0065707_103212432	3300005295	Switchgrass Rhizosphere	MEERILILDPEVKPPEYRVPRGRSGVGASSALETLLSDLERIRKAREAYAQLFQGIEQAVTRH*
Ga0066388_1037054322	3300005332	Tropical Forest Soil	MACGARSGYHFVPTMAQPIPFLDPEVKPPDYRVPRGRSGHGSKSALETLLKDLDRVRRAKEAYGDLPKRPDSSLPY*
Ga0070688_1011338921	3300005365	Switchgrass Rhizosphere	MEEPILFFDPEVKPPDYRVPRGRSGVGAQSALETLLSDLERIRKAREAYTQLFRGIEDAITRH*
Ga0070659_1014915341	3300005366	Corn Rhizosphere	MSDVPYLDPEVKPPEYRIPRGRSGEGAHTALMTLLKDLERVRRAKEAYGDLPPRKPGPLLGA*
Ga0077121_100463581	3300005511	Arabidopsis Rhizosphere	MAQPIPFLDPEVKPPDYRVPRGRSGHGAKSALETLLKDLDRVRRAKEAYGDLPKR
Ga0077121_100495715	3300005511	Arabidopsis Rhizosphere	MSQPIPFLDPEVKPPDYRIPRGRSGHGSKSALETLLKDLDRVRRAKEAYGDLPKRPDSSLRY*
Ga0077122_101813852	3300005515	Arabidopsis Root	MEPIAYLDPEVRPPEYRVPRGRSGVGAQSALETLLRDLERIRRAKEAYGDLARTQENSQFLF*
Ga0066670_105528861	3300005560	Soil	EVKPPEYRVPRGRSGHGSRSALETLLRDLDRVQRAKEAYGDLPPRHDSPFRF*
Ga0075365_102552843	3300006038	Populus Endosphere	MSQSIPFLDPEVKPPEYRVPRGRSGHGSKTALETWLKDIDRVQRAKEAYGDLPRRPGPAVPY*
Ga0075365_108449272	3300006038	Populus Endosphere	MAAVNAMEPISYLDPEVRPPEYRVPRGRSGVGAQSALDTLLRDLERIRQAKEAYGDLPRRAEQWQFRF*
Ga0082029_12845422	3300006169	Termite Nest	MEERILFLDPEVKPPHYRVPRGRSGVGAQSALETLLSDLERIRKAKEAYTELFQGIEQALTRH*
Ga0082029_14704757	3300006169	Termite Nest	MQDHTAPLDPEVKPPHYRVPRGRSGVGAQSALETLLKDLERIRRAREAYGDLPQGPERLLYRF*
Ga0082029_180779211	3300006169	Termite Nest	MPDRIVYLDPEVKPPEYRVPRGRSGVGAKSALDTLIQDLERIRRAREAYGDLPRPAENWQFRF*
Ga0075369_104184663	3300006186	Populus Endosphere	MSQSIPFLDPEVKPPEYRVPRGRSGHGSKTALETWLKDIDRVQRAKEAYGDLPRRPGPALPY*
Ga0075421_1003289412	3300006845	Populus Rhizosphere	MVDRIPYLDPEVRPPEYRVPRGRSGVGAQSALETLLRDLERIRRAREAYGDLPRHPENLQFRF*
Ga0075430_1001201092	3300006846	Populus Rhizosphere	MVDRIPYPDPEVRPPEYRVPRGRSGVGAQSALETLLRDLERIRRAREAYGDLPRHPENLQFRF*
Ga0079215_109491751	3300006894	Agricultural Soil	ELPAMPDRIAFLDPEVRPPEYRVPRGRSGIGSQSALETLLRDLERIRQAKEAYGDLPPRSEHLQLRF*
Ga0105679_101124585	3300007790	Soil	MPDRIVHLDPEVKPPEYRVPRGRSGVGSQSALETLVQDLERIRRAREAYGDLPPLAEQQQFRF*
Ga0111539_109710462	3300009094	Populus Rhizosphere	MSQSIPFLDPEVKPPEYRVPRGRSGHGSKTALETWLKDIDRVQRAKEAYGDLPQRPGPALPY*
Ga0105243_128134142	3300009148	Miscanthus Rhizosphere	MPQPIPYLDPEVKPPDYRVPRGRSGHGSMSALETLLKDIDRVQRAKEAYGDVPTRPDPALPY*
Ga0126304_105355702	3300010037	Serpentine Soil	MQPVPFRDAEVKPPEYRVPRGRSGVGAQSALEILLKDLERIRRAKEAYGEPADREMLQFRF*
Ga0134124_109715142	3300010397	Terrestrial Soil	MQDRILFLDPEVKPPEYRVPRGRSGVGAQSALETLLSDLERIRKAKEAYRQLFQGIEQAVTRH*
Ga0150985_1095433611	3300012212	Avena Fatua Rhizosphere	TMSQRIPYLDPEVKPPDYRVPRGRSGQGSRSALETLLKDIDRVQRAKEAYGDLPKRSDSPFRL*
Ga0150985_1123862732	3300012212	Avena Fatua Rhizosphere	MVSASLTFALPSIAMEPLSYLDPEVRPPEYRVPRGRSGVGAQSALETLLNDLERIRRAKEAYGDDAPRRQEQQWQFRF*
Ga0150985_1152503371	3300012212	Avena Fatua Rhizosphere	IPFLDPEVKPPDYRIPRGRSGHGSKSALETLLKDLDRVRRAKEAYGDLPKPPDSSFRLA*
Ga0150985_1153430852	3300012212	Avena Fatua Rhizosphere	MSQRIPYLDPEVKPPEYRVPRGRSGHGSRSALETLLRDLDRVQRAKEAYGDLPPRRDSYRL*
Ga0150985_1194461642	3300012212	Avena Fatua Rhizosphere	EPLSYLDPEVRPPEYRVPRGRSGVGAQSALETLLNDLERIRRAKEAYGDTQGRLEQWQFRF*
Ga0150984_1009107841	3300012469	Avena Fatua Rhizosphere	MPQRIVYLDPEVKPPEYRVPRGRSGTGAQSALETLLHDMERIRRAKEAYGDLPRRSDELQFRF*
Ga0150984_1127651892	3300012469	Avena Fatua Rhizosphere	AALATMAPTMSQRIPYLDPEVKPPDYRVPRGRSGEGSKSALETLLKDISRVQQAKQAYGDLPKRSEADSRF*
Ga0150984_1128179251	3300012469	Avena Fatua Rhizosphere	MEPISYLDPEVRPPEYRVPRGRSGVGAQSALDTLLNDLERIRQAKEAYGDLPVRPEQWQFRF*
Ga0150984_1153781542	3300012469	Avena Fatua Rhizosphere	MQESIAYRDPEVKPPEYRVPRGRSGVGAQSALETLLRDLERIRRAREAYGDTPRLSDQLQFRF*
Ga0150984_1160075191	3300012469	Avena Fatua Rhizosphere	IPYLDPEVKPPDYRVPRGRSGNGSRSAFETLLKDIDRVQRAKEAYGDLPQRPDSALRF*
Ga0150984_1165217622	3300012469	Avena Fatua Rhizosphere	MVSASLTFALPSIAMEPLSYLDPEVRPPEYRVPRGRSGVGAQSALDTLLNDLERIRRAKEAYGDTQGRLEQWQFRF*
Ga0150984_1193715031	3300012469	Avena Fatua Rhizosphere	PYLDPEVKPPEYRVPRGRSGHGSRSALETLLRDLDRVQRAKEAYGDLPPRQDSYRL*
Ga0150984_1214126662	3300012469	Avena Fatua Rhizosphere	PEVKPPDYRVPRGRSGHGSMSALETLLKDIDRVQRAKEAYGDLPKRSDSPFRL*
Ga0164308_109226672	3300012985	Soil	MSQSIPFLDPEVKPPDYRVPRGRSGMGSKTALETWLKDIDRVQRAKEAYGDLPRRPDPALPY*
Ga0164306_108182312	3300012988	Soil	MDAASVPFALPSIAMEPISYLDLEVRPPEYRVPRGRSGVGAQSALETLLNDLERIRRAKEAYGDLPSAQEKWQFRF*
Ga0164306_109146831	3300012988	Soil	TMQPIPFLDPEVKPPDYRIPRGRSGHGSRSALETLLKDLDRVRRAKEAYGDLPKPPDSSFRLA*
Ga0157380_135302681	3300014326	Switchgrass Rhizosphere	MPQPIPYLDPEVKPPDYRVPRGRSGHGSMSALETLLKDIDRVQRAKEAYGDLPHRPDSPSFPY*
Ga0182008_100710772	3300014497	Rhizosphere	MSDVPYLDPEVKPPEYRIPRGRSGEGAHTALMTLLKDLERVRRAKEAYGDLPPREPGPLHGA*
Ga0173478_108276622	3300015201	Soil	MSQSIPYLDPEVKPPDYRVPRGRSGHGSMSALETWLKDIDRVQRAKEAYGDLPRRPDPALPY*
Ga0182006_12943652	3300015261	Rhizosphere	MSDVPYLDPEVKPPEYRIPRGRSGEGAHTSLMTLLKDLERVRRAKEAYGDLPPR
Ga0190269_100117463	3300018465	Soil	MQDRILFLDPEVKPPEYRVPRGRSGVGAQSALDTLLSDLARIRKAKEAYAELFRGIEQALTRH
Ga0190269_101149152	3300018465	Soil	MQERILFLDPEVKPPNFRVPRGRSGVGAQSALETLLSDLERIRKAKEAYAELFQGIEHAVVARH
Ga0190271_126495482	3300018481	Soil	PEVKPPEYRVPRGRSGIGANSALETLMQDLERIRRAKEAYGDQKPLYESTQFRF
Ga0196970_10283593	3300020156	Soil	MPDRTACLDPEVKPPDYRVPRGRSGVGAQTALDTLLRDLERVRLAREAYGDLPAASEQQQFRF
Ga0209673_10162233	3300025273	Arabidopsis Root	MAQPIPFLDPEVKPPDYRVPRGRSGHGAKSALETLLKDLDRVRRAKEAYGDLPKRPDSSLRY
Ga0209673_10324314	3300025273	Arabidopsis Root	MSQPIPFLDPEVKPPDYRIPRGRSGHGSKSALETLLKDLDRVRRAKEAYGDLPKRPDSSLRY
Ga0207426_10975752	3300025302	Arabidopsis Rhizosphere	MEPIAYLDPEVRPPEYRVPRGRSGVGAQSALETLLRDLERIRRAKEAYGDLARTQENSQFLF
Ga0207645_100747741	3300025907	Miscanthus Rhizosphere	LDPEVKPPEYRVPRGRSGVGASSALETLLSDLERIRKAREAYAQLFQGIEQAVTRH
Ga0207705_100469991	3300025909	Corn Rhizosphere	DPDVKPPDYRVPRGRSGIGSKSALETLLKDIDRVQRAKEAYGDLPRQPGAGWRR
Ga0207705_100985384	3300025909	Corn Rhizosphere	VKPPEYRVPRGRSGVGAQSALDTLLKDLERIRLARQAYGDLPRNVEGLQLRF
Ga0207705_112538161	3300025909	Corn Rhizosphere	PDQILYPDPEVKPPEYRVPRGRSGVGSQSALDTLVKDLERIRLAKQAYGDLPRGVEGMQFRF
Ga0207659_106961291	3300025926	Miscanthus Rhizosphere	MAGVAPFAMDPIPFLDPEVKPPEYRVPRGRSGVGAQSALDILLQDLERIRRAKEAYGEPPQRPEMLQFRF
Ga0207644_110430752	3300025931	Switchgrass Rhizosphere	SCDKATAMEQPILYLDPEVKPPDFRVPRGRSGVGAQSALETLMADLERVRKAREAYLQLFQTIEQAVMRH
Ga0207690_112318802	3300025932	Corn Rhizosphere	MSDVPYLDPEVKPPEYRIPRGRSGEGAHTALMTLLKDLERVRRAKEAYGDLPPRKPGPLLGA
Ga0207648_122206022	3300026089	Miscanthus Rhizosphere	AHTVMEERILILDPEVKPPEYRVPRGRSGVGASSALETLLSDLERIRKAREAYAQLFQGIEQAVTRH
Ga0209481_101322252	3300027880	Populus Rhizosphere	MVDRIPYLDPEVRPPEYRVPRGRSGVGAQSALETLLRDLERIRRAREAYGDLPRHPENLQFRF
Ga0247828_100361373	3300028587	Soil	MVDRIPFLDPEVRPPEYRVPRGRSGVGAQSALETLLRDLERIRRAREAYGELPRQPENLQFRF
Ga0247828_102978063	3300028587	Soil	MAGVAAFAMDPIPFLDPEVKPPEYRVPRGRSGVGAQSALEILLQDLERIRRAKEAYGELPQRLGALRQ
Ga0247822_106965791	3300028592	Soil	MEERILILDPEVKPPEYRVPRGRSGVGASSALETLLSDLERIRKAREAYAQLFQGIEQAV
Ga0247821_100460733	3300028596	Soil	MAGVAAFAMDPIPFLDPEVKPPEYRVPRGRSGVGAQSALEILLQDLERIRRAKEAYGELPQRSETLQFRF
Ga0247821_101801423	3300028596	Soil	MEERILILDPEVKPPEYRVPRGRSGVGASSALETLLSDLERIRKAREAYAQLFQGIEQAVTRH
Ga0247821_112139642	3300028596	Soil	VASHENFGYHSQRCAMANRFEVPDPEVRPPEYRVPRGRSGVGSETALETLLSDLERIRRAKESWGEPAERPESWQFRF
Ga0247819_100952562	3300028608	Soil	MEEPILILDPEVKPPEYRVPRGRSGVGASSALETLLSDLERIRKAREAYAQLFKGIEQAVTRH
Ga0247819_103339883	3300028608	Soil	MANRIPYFDPEVKPPDYRVPRGRSGQGSKSALETLLKDIDRVRRAKEAWGDLPPRQDSQVRY
Ga0310887_110613142	3300031547	Soil	MPQPIPYLDPEVKPPDYRVPRGRSGHGSMSALETLLKDIDRVQRAKEAYGDLPHRPDSPSFPY
Ga0307408_1001078202	3300031548	Rhizosphere	MPDRIVCLDPEVKPPEYRVPRGRSGMGATSALETLLQDLERIRRAREAYGDLPPHAGQQQFRF
Ga0307408_1002530132	3300031548	Rhizosphere	MPDRIVYLDPEVKPPEYRVPRGRSGHGSKSALETLLQDLERVRRAKEAYGDVPRSADLPQYRF
Ga0307408_1011813842	3300031548	Rhizosphere	MADRIPYLDAEVKPPEYRVPRGRSGVGAQSALETLLRDLERIRRAKEAYGDLPRQPEHWQFRF
Ga0307408_1016304091	3300031548	Rhizosphere	MPDRIVYLDPEVKPPEYRVPRGRSGTGATSALETLLQDLERIRRAREAYGDLPPHAGQQQFRF
Ga0310886_109425341	3300031562	Soil	MAGVVAFTMDPIPFLDPEVKPPEYRVPRGRSGVGAQSALEILLQDLERIRRAKEAYGEPPQRQETLQFRF
Ga0302321_1011482212	3300031726	Fen	MAAAKVMEPISYLDPEVRPPEYRVPRGRSGVGAQSALETLMRDLERIRQAKEAYGDQPKRPDQWQFRF
Ga0307413_118618862	3300031824	Rhizosphere	MQKRIEYLDPEVRPPEYRVPRGRSGVGAETALETLLSDLERIRRAKEAYGEPSERPESWQFRF
(restricted) Ga0255338_10146523	3300031825	Sandy Soil	MQDRIVFLDPEVKPPEYRVPRGRSGVGARSALETLLSDLERIRKAREGYAQLFQGIEQAVHRH
Ga0310892_105655412	3300031858	Soil	MDPIPFLDPEVKPPEYRVPRGRSGVGAQSALEILLQDLERIRRAKEAYGEPPQRQEMLQFRF
Ga0308175_1001261602	3300031938	Soil	MPDRIPAPDPEVKPPEYRVPRGRSGIGAQSALDTLVKDLERIRLARQAWGDLPRSGSEAVQFRF
Ga0308175_1012325882	3300031938	Soil	MPDRILFADPEVKPPEYRVPRGRSGVGAQSALETLVKDLERIRLARQAYGDLPRQFEALQLRF
Ga0308175_1018258772	3300031938	Soil	MPDRILFPDPEVKPPEYRVPRGRSGVGAQSALDTLLKDLERIRLAKQAYGDLPRQFEGLQLRF
Ga0308175_1025980972	3300031938	Soil	MAGVVVTAMQTVPFRDPEVKPPEYRVPRGRSGIGAQSALEILLKDLERIRRAKEAYGEPAERETFQFRF
Ga0308174_102502972	3300031939	Soil	MQEPILYLDPEVKPPYYRVPRGRSGVGAQSALETLLNDLERIRKAKEAYRQLFQGIEEAVTRH
Ga0308174_103330624	3300031939	Soil	MAQRIPYLDPEVKPPDYRVPRGRSGHGAREALETLLRDLDRVQRAKEAWGDL
Ga0308174_110035881	3300031939	Soil	MPDRIPFLDPEVKPPEYRVPRGRSGVGAQSALDTLAKDLERIRLARQAYGDLPHSFETLQLRF
Ga0308174_110970722	3300031939	Soil	MPNPILIADPQVKPPEYRVPRGRSGVGSQSALDTLLKDLERIRLAKQAYGDLPRSFEGLQLRF
Ga0308174_116953482	3300031939	Soil	MVSCEWLPLPVTMQPIPFLDPEVKPPDYRIPRGRSGHGSKSALETLLKDLDRVRRAKEAYGDLPKPPDSSFRLA
Ga0307409_1028080382	3300031995	Rhizosphere	MANRIPYLDPEVKPPEYRVPRGRSGVGAKSALETLLHDLERIRRAREAHGDLPPRADELQLRF
Ga0308176_105501312	3300031996	Soil	MVSCEWLPLPVTMQPIPFLDPEVKPPDYRIPRGRSGHGSMSALETLLKDLDRVRRAKEAYGDLPKPPDSSFRLA
Ga0310902_102653461	3300032012	Soil	HPRSSVAMEEPILFFDPEVKPPDYRVPRGRSGVGAQSALETLLSDLERIRKAREAYTQLFRGIEDAITRH
Ga0310902_105487822	3300032012	Soil	MVGVFAFSMDPIPFLDPEVKPPEYRVPRGRSGVGAQSALEILLQDLERIRRAKEAYGEPPQRQETLQFRF
Ga0308173_102739633	3300032074	Soil	MPNRTLIADPEVKPPEYRVPRGRSGVGSQSALDTLLKDLERIRLAKQAYGDLPRSFEGLQLRF
Ga0308173_111261381	3300032074	Soil	MAQRIPYLDPEVKPPDYRVPRGRSGHGAREALETLLRDLDRVQRAKEAWGDLPPRQDSPSRF
Ga0315910_103262363	3300032144	Soil	MPQPIPYLDPEVKPPDYRVPRGRSGQGSMSALETLLKDIDRIQRAKAAYGDLPQRPDSPAFPY
Ga0335084_101902012	3300033004	Soil	MNQAVHPLDPEVKPPEYRVPRGRSGVGAQSALETLLKDLERIRRAREAYGDAPRRAEPWFRF
Ga0247829_109166272	3300033550	Soil	MAGVIAFAMDPIPFLDPEVKPPEYRVPRGRSGVGAQSALEILLQDLERIRRAKEAYGEPPRRQETLQFRF
Ga0372946_0172790_307_498	3300034384	Soil	MPHRITFLDPEVKPPEYRVPRGRSGVGSDSALETLLHDLERIRRAKEAYGDLPERPDHLQFRF