3300019775: Lab enriched sediment microbial communities from hydrocarbon-contaminated retail site, Toronto, Canada - S1, HI.1247_001

Overview

Basic Information

• IMG/M Taxon OID: 3300019775
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0129329 | Gp0220917 | Ga0197853
• Sample Name: Lab enriched sediment microbial communities from hydrocarbon-contaminated retail site, Toronto, Canada - S1, HI.1247_001
• Sequencing Status: Permanent Draft
• Sequencing Center: Genome Quebec
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 163100334
• Sequencing Scaffolds: 13
• Novel Protein Genes: 13
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Thiobacillaceae → Thiobacillus → Thiobacillus thioparus	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Thiobacillaceae → Thiobacillus → Thiobacillus denitrificans	4
Not Available	1
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Thiobacillaceae → Thiobacillus	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Azonexaceae → Dechloromonas → unclassified Dechloromonas → Dechloromonas sp.	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → unclassified Verrucomicrobiaceae → Verrucomicrobiaceae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Metagenomes From Benzene-Degrading Nitrate-Reducing Cultures
• Type: Engineered
• Taxonomy: Engineered → Lab Enrichment → Defined Media → Anaerobic Media → Unclassified → Enriched Sediment → Metagenomes From Benzene-Degrading Nitrate-Reducing Cultures

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): na → na → na

Location Information

• Location: Toronto, ON, Canada
• Coordinates
  • Lat. (^o): 43.6532
  • Long. (^o): -79.3832
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005246	Metagenome / Metatranscriptome	407	Y
F014467	Metagenome / Metatranscriptome	263	Y
F025775	Metagenome	200	Y
F049077	Metagenome / Metatranscriptome	147	Y
F052685	Metagenome / Metatranscriptome	142	Y
F061953	Metagenome / Metatranscriptome	131	Y
F066909	Metagenome / Metatranscriptome	126	Y
F076808	Metagenome / Metatranscriptome	117	Y
F080249	Metagenome / Metatranscriptome	115	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0197853_1011526	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Thiobacillaceae → Thiobacillus → Thiobacillus thioparus	104739
Ga0197853_1014544	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Thiobacillaceae → Thiobacillus → Thiobacillus denitrificans	164985
Ga0197853_1015008	Not Available	602
Ga0197853_1021850	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Thiobacillaceae → Thiobacillus → Thiobacillus denitrificans	8360
Ga0197853_1031580	All Organisms → cellular organisms → Bacteria	61643
Ga0197853_1041513	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	51391
Ga0197853_1043694	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Thiobacillaceae → Thiobacillus → Thiobacillus denitrificans	120258
Ga0197853_1051545	All Organisms → cellular organisms → Bacteria	401813
Ga0197853_1057921	All Organisms → cellular organisms → Bacteria	230171
Ga0197853_1058259	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Thiobacillaceae → Thiobacillus → Thiobacillus denitrificans	258636
Ga0197853_1064881	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Thiobacillaceae → Thiobacillus	24143
Ga0197853_1077317	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Azonexaceae → Dechloromonas → unclassified Dechloromonas → Dechloromonas sp.	935
Ga0197853_1097662	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → unclassified Verrucomicrobiaceae → Verrucomicrobiaceae bacterium	564

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0197853_1011526	Ga0197853_101152688	F025775	MKRLLTFQGFPMVVVTALIVWAWISIFSVLIASFF
Ga0197853_1014544	Ga0197853_1014544146	F025775	MKQLLTFQGFPMVVVWILVAWAWFSIFSVLIGSLF
Ga0197853_1015008	Ga0197853_10150081	F066909	MTHVVSLRMPPEKVAAIDRRATDSGLDRTKYLLRLVDQDLARPARPSKRRFASLHLLGRFRSRGSSNAQVRAALKAQGEEDR
Ga0197853_1021850	Ga0197853_10218505	F025775	MKQLLTFQGFPMVVVVALIVWSWISILSVVIGSLF
Ga0197853_1031580	Ga0197853_103158039	F061953	MSGPVWKLLRMTGSCDSCGEGADELLAVGTVVDYAFRPDYRFCRACYDRYEGRHDELHPKAVAEQQLPPLISRPDSVEDVPE
Ga0197853_1041513	Ga0197853_104151345	F080249	MADDKKKVGRQDDNLIAFKQRYEFDYAAKQLQKQVVGATRQEAKEALTKAAKKVSPSEGREKVMREARKILRD
Ga0197853_1043694	Ga0197853_1043694120	F025775	MKQLFTFQGFPMVVVVALIVWSWISILSVLIAAFF
Ga0197853_1051545	Ga0197853_1051545160	F014467	MKKTTTAVVATIAALALGSSALATMQLQKEYKAKDPKANCASCHVDKMPKKDKHDLNDLGKKVKDATGADGKVDWSKV
Ga0197853_1057921	Ga0197853_105792114	F052685	VKRTQAARVRKALDYVKKRLKLDLEFVVEPGEVHEQFGLLDIERSMRGTEDRKVWVVSFDPELVSKESLAALRRHAFHEVLHALTWPLFDEAEAAIRSVPDSRLRKELMDRSIDARENVVYELERKIGPLCFPSLPWVDP
Ga0197853_1058259	Ga0197853_105825947	F049077	MEVGPFFPGMPDPVGALLPALISIGIVLARQARSGLGKAELFWLVVFSLALSAALARATITPDEASLHIVPGATVLICYLLWRGRYISPGLAFALTYATSLPVDFFMAQILFGAGFNSECIGGAGWRDGLLVLPSLTALAVMYGNWRMTKVRRAGLFWFGQQTGGRILEPSPARPGGTVV
Ga0197853_1064881	Ga0197853_106488115	F049077	MDLDPFFPSMANTVGALLPALISFGIVLARRARSGLGLADQLWVIVVSIALSVALSRVTITPDVTALHFMPGATVALCYLVWCGHYISPGLAFATTYATCLPVDFFLAQRLFGADFNPESIGGAGWRDGLLVFPTLTALAVMYANWRSLHAGGTRLIGFGQQTGGHALDWARGHLKRHGVAGR
Ga0197853_1077317	Ga0197853_10773171	F005246	MKKEIVVEHFLAGRRVVIAKFVAHRFKEVQNKAKKVVGIVNLYEVQCADGKAPTVQVWYPRSVQSVEQAAKDCPCQFKDGQKIVVEFDLMEPNTFDAKNGVLIRAGSVLPLE
Ga0197853_1097662	Ga0197853_10976621	F076808	MLLGFPENFSENGARPVQFLGRNGRLIGWARSFSDTMTVTDNTIVGGRPQGRLTRIAGRDVSEPDGHTVGKTFSRKELLGCPWRHSPARSAESASNHLPAPSPDQHQSLDPSGPLMHKSSYPQNGARETGLGHWL