3300019758: Microbial mat bacterial communities from the Broadkill River, Lewes, Delaware, United States - BB_2_MG

Overview

Basic Information

• IMG/M Taxon OID: 3300019758
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0129088 | Gp0217617 | Ga0193951
• Sample Name: Microbial mat bacterial communities from the Broadkill River, Lewes, Delaware, United States - BB_2_MG
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 288452110
• Sequencing Scaffolds: 4
• Novel Protein Genes: 7
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	2
Not Available	1
All Organisms → Viruses	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Microbial Communities From Sediments And Microbial Mats In Various Locations
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater river biome → river → microbial mat material
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: USA: Delaware
• Coordinates
  • Lat. (^o): 38.7906
  • Long. (^o): -75.1644
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021441	Metagenome / Metatranscriptome	219	Y
F024918	Metagenome / Metatranscriptome	204	Y
F040603	Metagenome / Metatranscriptome	161	N
F051181	Metagenome / Metatranscriptome	144	N
F083435	Metagenome / Metatranscriptome	113	Y
F092061	Metagenome	107	Y
F099388	Metagenome / Metatranscriptome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0193951_1009243	All Organisms → Viruses → Predicted Viral	3505
Ga0193951_1038888	All Organisms → Viruses → Predicted Viral	1210
Ga0193951_1077328	Not Available	770
Ga0193951_1128307	All Organisms → Viruses	569

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0193951_1009243	Ga0193951_10092431	F040603	MWTHEAQLQLCGSTNMMYYTKHKTLADTSETSLFTVPSGYVLWINYIFIANHGNSTNNVSCWWEDGAGVDQLYFLDNNSLQSGAKEILGGQADAPIFVLHNGDVVKAQTGSAGDVEIAFTFKLMNEPAAFPNFNGS
Ga0193951_1038888	Ga0193951_10388881	F051181	MDDLLEQAQENISENVDKQEKEKLYLVLQESLNELSGLEELNKTYKELRDKAIKDLYNVGISAQSLAKTTELTRQMIHRIVK
Ga0193951_1070246	Ga0193951_10702463	F083435	SSKLKKYRFGTIRSAYSRLPRFWYGWLGRGTLDDLTNEEYEQYLKNKDNRGSIQKAKRRNSKIRWEYRQERLKNRFIQLLAKLGIKITGVNKGDKGDDLYEEFKKFSKK
Ga0193951_1077328	Ga0193951_10773282	F092061	MNKKETSEAIIKFFVESYTAPTKEKREYANWCAYRACSGLYPEEVRYFQREAVSRLHYKHWRRVKQEATA
Ga0193951_1122210	Ga0193951_11222101	F099388	LEDLVKKEGFVKEGNQYILKPDTPTNVVGNEFVDNILNANTQLVNNLPLSETVKNQFDNVVRNRAKNLATPGGVIDAVDVWEMGVLGLMIAAIAYKEYDEIPTIFKRTATNMFNSMTSMYNIPPVPLEQYDLDYEFIEKVITTGEKVMPTDIIIKKVGEIAKGVGEKGLATGFGYVPTTPKNTDTMETTQKIQPG
Ga0193951_1128307	Ga0193951_11283071	F024918	RSVNPLIRIANTLEEILRLVKKDQEETRARFEERWDKEDNEKN
Ga0193951_1128307	Ga0193951_11283072	F021441	MKKIKHNDLVPWFIQDHGTLPASYLKSCRSFFDSIKLQASSIKPQASNQKNLHKPGTRVKNRFNRKI