NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300019740

3300019740: Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? FRC_4-5_MG



Overview

Basic Information
IMG/M Taxon OID3300019740 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0129088 | Gp0217654 | Ga0193988
Sample NameSediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? FRC_4-5_MG
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size142294969
Sequencing Scaffolds39
Novel Protein Genes42
Associated Families37

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales1
All Organisms → cellular organisms → Bacteria3
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Olavius algarvensis associated proteobacterium Delta 31
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1
All Organisms → cellular organisms → Bacteria → Proteobacteria2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium4
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae1
Not Available19
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Olavius algarvensis Delta 1 endosymbiont1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Sedimenticola → Sedimenticola thiotaurini1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Caudoviricetes sp.1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium1
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMicrobial Communities From Sediments And Microbial Mats In Various Locations
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater river biomeriversediment
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationUSA: Delaware
CoordinatesLat. (o)38.7906Long. (o)-75.1638Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001488Metagenome / Metatranscriptome686Y
F004052Metagenome / Metatranscriptome455Y
F004928Metagenome / Metatranscriptome418Y
F011401Metagenome / Metatranscriptome291Y
F012457Metagenome280Y
F012917Metagenome / Metatranscriptome276Y
F012964Metagenome275Y
F015742Metagenome / Metatranscriptome252Y
F020094Metagenome / Metatranscriptome226Y
F021645Metagenome218Y
F023596Metagenome209Y
F026445Metagenome / Metatranscriptome198Y
F027522Metagenome194Y
F037200Metagenome / Metatranscriptome168Y
F037736Metagenome / Metatranscriptome167Y
F039151Metagenome / Metatranscriptome164N
F041201Metagenome / Metatranscriptome160Y
F045765Metagenome / Metatranscriptome152N
F045766Metagenome152Y
F051933Metagenome / Metatranscriptome143Y
F062772Metagenome130Y
F063710Metagenome129Y
F073262Metagenome120Y
F074893Metagenome / Metatranscriptome119Y
F076890Metagenome / Metatranscriptome117N
F081352Metagenome / Metatranscriptome114Y
F084254Metagenome / Metatranscriptome112Y
F085223Metagenome / Metatranscriptome111Y
F085725Metagenome111Y
F086605Metagenome110Y
F090407Metagenome108Y
F090408Metagenome108Y
F092076Metagenome / Metatranscriptome107Y
F095489Metagenome105Y
F101181Metagenome102Y
F102142Metagenome / Metatranscriptome102Y
F103273Metagenome / Metatranscriptome101Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0193988_1002172All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales2162Open in IMG/M
Ga0193988_1002533All Organisms → cellular organisms → Bacteria2023Open in IMG/M
Ga0193988_1003083All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Olavius algarvensis associated proteobacterium Delta 31876Open in IMG/M
Ga0193988_1008092All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1279Open in IMG/M
Ga0193988_1008633All Organisms → cellular organisms → Bacteria → Proteobacteria1247Open in IMG/M
Ga0193988_1008790All Organisms → cellular organisms → Bacteria1239Open in IMG/M
Ga0193988_1009769All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1189Open in IMG/M
Ga0193988_1011438All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae1119Open in IMG/M
Ga0193988_1014804Not Available1010Open in IMG/M
Ga0193988_1015204All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Olavius algarvensis Delta 1 endosymbiont1000Open in IMG/M
Ga0193988_1017511All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Sedimenticola → Sedimenticola thiotaurini946Open in IMG/M
Ga0193988_1021308Not Available875Open in IMG/M
Ga0193988_1022145Not Available861Open in IMG/M
Ga0193988_1031355All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium752Open in IMG/M
Ga0193988_1033092Not Available736Open in IMG/M
Ga0193988_1033315Not Available735Open in IMG/M
Ga0193988_1034419All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium725Open in IMG/M
Ga0193988_1043682Not Available660Open in IMG/M
Ga0193988_1048628All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Caudoviricetes sp.633Open in IMG/M
Ga0193988_1048770All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales632Open in IMG/M
Ga0193988_1050997All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium622Open in IMG/M
Ga0193988_1054789Not Available604Open in IMG/M
Ga0193988_1057120Not Available594Open in IMG/M
Ga0193988_1057352Not Available593Open in IMG/M
Ga0193988_1061306Not Available578Open in IMG/M
Ga0193988_1062765Not Available573Open in IMG/M
Ga0193988_1062945Not Available573Open in IMG/M
Ga0193988_1063059Not Available572Open in IMG/M
Ga0193988_1063624Not Available570Open in IMG/M
Ga0193988_1066192Not Available562Open in IMG/M
Ga0193988_1067913Not Available556Open in IMG/M
Ga0193988_1068242All Organisms → cellular organisms → Bacteria555Open in IMG/M
Ga0193988_1068719Not Available554Open in IMG/M
Ga0193988_1076394All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium532Open in IMG/M
Ga0193988_1076551Not Available532Open in IMG/M
Ga0193988_1078061All Organisms → cellular organisms → Bacteria → Proteobacteria528Open in IMG/M
Ga0193988_1081458Not Available520Open in IMG/M
Ga0193988_1085775All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium510Open in IMG/M
Ga0193988_1087930All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon506Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0193988_1002172Ga0193988_10021723F001488LFLHEHLNRILRPIKKQNVKEKLNMARLELTLNFPKSFQIKTFNVKSEKKLSPLAKLILQSVQFKHFYYVRDDISYLLKSNPIERDFLLQALYSIVISLQNNLSINFFDMWVYEVYINKVSTHNKFMSQKSQNLEPGEYLTIKLAYGSSVSQEKK
Ga0193988_1002533Ga0193988_10025332F101181MGVSNQVKVVVLACVIAVLVVGISLGGPKLINAVQMHFGSKGKIELIDRCIEMPGCSIGPADLDFYERYQTIRDSDAAQKIRESDVVEELLEQ
Ga0193988_1003083Ga0193988_10030832F095489MRMTTPAHNDVVDWNLVAERRFEDIEELNDLVQGWDFEFHQLKAGRSPAELLQLGRPEFMLTRFYFEQPYDQGGCTARNALTIGLTEEGTDEVT
Ga0193988_1004570Ga0193988_10045703F076890MLVAMGALGTSACSTLEVDDYCRYSETRSIRTADPESLALVLGVQAGRARQTPFVVIRSLSESTPGASVTLHTTPAAHPMPMGLDESRCARVDWSTYTLAVDPEEWNAFWQDDRNSPFEIGIAFVEDFHPLPLSAFGAVILDTGSADYLVSCGCFWR
Ga0193988_1008092Ga0193988_10080921F026445MSITEAKSKRENRTITLHLGNTLAEYEGTYLTEERIQAVIDKVEIADSLNWGCLATGHKPGCPRQLRFTHHDSYSRWAKHFDGARSLVTILRVRCLDCGTVFSVQPAFIIRYKRYETDAVEKLMTLLFITEDSYRMAGVSQALGLDTQQAGTWLALEREHSRAIQPMPLWRLVQWLGQLSPAQLNLALGVDPPHYIIEDEKHTKECGQKAYIPMVYAPKEALIWWIDYIHSVSETELSASLERFKAISDRLKDITGATVDGWEAAQNALQTAFEGITLAECHFHAMLKLGQYLATYKRQRKKARRPVSEAEEAAIQAAFRDVLKATTPEEYQQTLDELPHVFDQEPLASRKQSLVTKQTLFQAWTTDHRLAVVTTALDQCMKFLTRKCDNMQTF
Ga0193988_1008633Ga0193988_10086331F027522MGKHSDVSHRGTEANAYFVVLICTTVDVGAALAANNPSDRSELAAEAAPTKLKTSVFSVT
Ga0193988_1008790Ga0193988_10087901F086605MMVDPLIHDTADPVPADVGDYICPIAVVFTGGECGAAESVVSVSKVSTKAKYQAC
Ga0193988_1009769Ga0193988_10097692F085725MNLLLATALLLISAVAVGFYLFFLGLRQRKRSPGLGFTHAGLALCGIIVLFTEIFTGPTDKLNNVAALFLFFAIVGGGMVFALHEENRPPSMAAVTAHAIMGLAGISLLIINLF
Ga0193988_1011438Ga0193988_10114382F090407MVLDNTLISVLILILIGILVLVYFNWSNTRDARRHTQKIFQQQRLVREVPDAHRLSQAVHLLRPSVRLGFDYFIETEDGKLPHISEWNTAGTMPTQAEFDEALRRVGSIDSKGYAAMRRQEYPSIEEQLDAAYKARRGDFTEQEELDNRIQQIKDKYPKSDDAL
Ga0193988_1014804Ga0193988_10148041F102142SRGKLRLLAIRIYDRVVQLKNYVDTTRREDSMSRERMFNETISNIFKASLVGILVVVIWVIPLEQFIAQLFGISFDEFGGGMPALYLFPLFLIYTAIALVLAKMKKNLNVSKRGAFFIIFAFHYAIAAFLPVLEGKIYLPDFPFLPALIGASILALAVVSLIFYLWKQEDNPEAKVGQQIKSYFSSRSVMSWVWRFFLVWLLFYILTMIISIVAYPFTKPYLDDAMNTLGMVIPSMATLFAITQFRSLIYILVTLPFIIFWKSSKKDLFLYLALIIVIQYPLLGDGLAYFWPVMYRLIDGIVLALQVTIMSWLYVTMLWKGKKI
Ga0193988_1015204Ga0193988_10152041F037736LDVLQILWLLANPLWTHDIGESGSKTFTGWLLMGAADANHIWWLNINPPQADLLLHLNSYRIRHLPFDLSVTFLHNWNSKEILL
Ga0193988_1015292Ga0193988_10152921F085223VNIDQAKPKRQKRTITLYLGNTLGEYEATYLTETGLKALIRRVETADSINWGCLATGHEAGCPRQLHFTHHDSYSRWVKHFNGTQSVVVIHRVRCLDCGAVFSVQPSFLIRYKRYDTDATEKLMTLLFITEDSYRMAGVSQTLALDDQQAGTWAALEIHQAHAIQPLALWRLVQWLGQLSPAQLNLALGVEPPQIIIEDEKHATECGQKSYIPLVYAPKEALIWWVDYLHSVSEADLTASLERFKAISDRLVDIIGATVDGW
Ga0193988_1017511Ga0193988_10175111F062772MNLNGIWSSELGGAYGWEPIGTFFLKNGHLMGGGRNHFSLGTYKTKGDSAVFHLEIKQFGKKRALFGQKSDQVRVTVKAKRDDDTMIGEATLPGHTEYGICVRFQRRADLPEEKTH
Ga0193988_1021308Ga0193988_10213082F081352MTRLIRKISAITLTCLLALSRAAGVVVVVEHCASSMASSSPIDMSHCDGLLNFAFPIQGCCGKCGDIFCDLIKNPLQDANVVKPSPFQGSCYPFFLGTVDTIAESGAWIGLSEPKNLFSG
Ga0193988_1022145Ga0193988_10221452F015742MNTKKAYEQIKEDIVDRESAYLCTELERALDRIINYTDPLDETMFRDIKASAIKLLKEWH
Ga0193988_1031355Ga0193988_10313552F095489MNTSAQHDVVDWHLVAERRFEDIEELNEQVQGWDFEFHQLKAGRSPAESLQFGRPEFLLTRFYFDQPYHQRGSTAPD
Ga0193988_1033092Ga0193988_10330921F103273RSAWKILRLDAIRPVVRQTIADLEALTAAQVVGREPSRYEIEVERGSLRAALDACCDELREGCGLPTSPGLSAQVQKMHAADPDWTESFSNALEAYRSAACKELDVSLASLALPPESSSALETP
Ga0193988_1033315Ga0193988_10333152F063710MKKPRQRSLRVRVDYEPNRFSGDCLERIYEQLHPTKSRKVTPDKNNKQGEVEPQKGKGGQ
Ga0193988_1034419Ga0193988_10344192F023596MSDKSIQAVLIVGACAIALVFVKLMFDMSRSMGEMTAYISTISQDVSHMQQDMRALNESMLRMEKSLHGIGQAFSQGSEQFRQMSPGGMMQQVFPDGGQRRR
Ga0193988_1043682Ga0193988_10436822F004052MRILTMIVLFSLTALLCACDQRHAASDVDPELGLECFESHRAALPPGSQYEGIEKLAGSRLTIRVMNGVEVVTLACELNPDGTSLSAVE
Ga0193988_1048628Ga0193988_10486282F039151LVVLMLHTKHITLTDATEQTLFTIPTGYTIHIVYIFIANHGNSTNQVSLWWETGGVDQMYFFDGTSIGAGNKEILGGQNDKGIFVLHNGDTVKTQASSATGQMEVAVTFELLERPTAFSNFNGS
Ga0193988_1048770Ga0193988_10487701F020094ISYVITINLSPTNTLINVKTIKGNPRFFYSAGMCNLQKKQKIRQPKAIITILRALLLKTKLFKTKPVAVHFNNLFFNHQTYILKKLKQKIFTKLVTSYTCFSHNGCRLKKKKRIKIRTRKFSKE
Ga0193988_1050997Ga0193988_10509971F011401TPEVKSVQFRALARPELVVAQIPINISDRVERPGRKPIRVKGLGEALYRALRDKEGTSVTLELFEPTEIIRGVVEQISYPIQSNEVVGSDTHYAIITVRGTRQPSLEDVTSVNTVGIAAYGIMRFGA
Ga0193988_1054789Ga0193988_10547891F073262LTTACSALWDHLRAASANQAGPIAPSTSGALEMADDPTGHLIGAARRHTNKNLEGLQAPVGIATQLLALQSATNTTGTNLNASLNRPKAVTTLQDKCPMLVASLLAVCEVATTADPPVHWSTVHAMLKATEWAACHVNALDLAGSETNKPVPVTSPPLAQDMGNGRFAASSTNNPTEGTSIFCIRPSCMPRHQECLNRNR
Ga0193988_1057120Ga0193988_10571201F012457MMIKDLEMSKDLDRDALSAVRGGSNSITQGGVYAPVANVNDGFSFGSPTSIVSAPVNAPSAVLNDNDLHLKLANKSANVLGSLGTVVLQ
Ga0193988_1057352Ga0193988_10573521F090408PEDPESALGLLRGDDNAPPTVDVPITDVGADEVTVDFRAEDDVMLASGYGLLLFHTDDDKQLAVLGSSPGAIGVKTFAGTATLPLLAVTVGPAGADPTSDVVGFLARTEGKYSVPVVARAGAREERGSLILSDDGVVEGLAVRSEDGAWASLAWEDVLAVSDAEIAPLWFTVDPQTGEYETNEGVATAVSEVSVGFI
Ga0193988_1061306Ga0193988_10613061F073262NNCLEGLRAPVGIATQPLAPQSAANMTGTNLNASLNRPKAMATLQDKCLMLVASLLAACEVATAAALPMHWSKVHATLKPAEWAACHARALDTAGNEIDKPAPLIPPPVASDLGNGRFAASSSHDPNEGMSTFRIRPSCMPSRQEHQDRNRTFEVLVQGVGVASFEVQQMALINNEFELPQPAEEFRGCING
Ga0193988_1062765Ga0193988_10627651F092076MFSYKIDKLLGIIFTRVSGTPTCVSMIDHIQNVMNDPDFDTNINSIIIVEENTIIVGVPTNKIETIRRVFDGFAQQGKGRNCAVVAPNKRLEAFLKLNLSLISPVILNYRIFLNEDDALTWIKEQ
Ga0193988_1062945Ga0193988_10629451F004052MRILTSIVQLALTTLLLSCDQRHSTSDVDPKLGRECFDSHRASLPPGTQYEGIEKLAENRLTIKIMNGVDVVTLDCRLNPDGTLQGTGI
Ga0193988_1063059Ga0193988_10630592F012917FLRFPLNDSGYYEKYSSFSEVSQVWDRKKHLRRKRWSQE
Ga0193988_1063624Ga0193988_10636241F074893MVPSRLYAIADNGSLTIRISGPMDLLLTSALRECCHDTATDYSRYIVDFQDVSIVRDSGLALLLMLKRLANRTGATLHVINGNTDLMHRCYKLGIKSAS
Ga0193988_1066192Ga0193988_10661921F051933MLGFGHQTVFSLCMALIVLTFVSVVCVALLFIERRDLGVLQQNFNTLRQENTMLRSQLDDYRNGLATQQEAAARLNRE
Ga0193988_1067913Ga0193988_10679132F085725LLISAVAVGFYLLFLGLRQRKRSPGLGFTHAGLALSGIIVLFTEIFTGPTDKLNNVAALFLFFAIVGGGMVFALHEENKPPSMVAVTVHAIMGLFGISLLIINLF
Ga0193988_1068242Ga0193988_10682422F045766MHEIQQQLEKVIARMQTIQRAIKSSGQPASRFELQELKDLGAKYAQIIESLETTPDNQSR
Ga0193988_1068719Ga0193988_10687191F037200MATTIITKNGSGAPTTDDLSTGELAIDLTNKRLYS
Ga0193988_1076394Ga0193988_10763942F045765MKYHSSKGENTSPIKIDDRLYDLLRKFCDKEGRRLKEFVEDALENAIYTEESIKVLNEEIISLKKKEAKYDYAFRRGFQKGFYICFVALHGQILLDPDEDDFEILKSDPYRISK
Ga0193988_1076551Ga0193988_10765511F073262LEGLQAPVGIASQLLDLQSATNTMGTNLNASLNRPKALATLQDKCPMLVASLLAVCEVATTAALPVCWSKVRATLKPAKWAACHAHALDTAGSEVDKPAPLIPLPMASDLGNGRFTASSTNNPNEGMSMFRIQPSCMPSRQEHQDRNRTFEVLAQGVGAASFEAQQMVLINGEFEL
Ga0193988_1078061Ga0193988_10780611F041201LVQDRDGAEFKTAGILLYVEDLKRGTNKDMGPKDIFEMGSYH
Ga0193988_1081458Ga0193988_10814582F084254MRAKRIPVFISESIVIEIMAEVIRQSKRYPRADQVASALAKRGVPIAEKDVMIVFDQYDIEKKTADSH
Ga0193988_1085775Ga0193988_10857751F004928MSQALHSIVSEPNHTVEIVVHITETLGEQQRGDLVAALEGNVGIATAEFCPLHYHLMLVRYDTELYSSQDV
Ga0193988_1087930Ga0193988_10879301F012964MEEQVPPSQSPAMAQITPEQLEAMKARARELALQQTIAQQAAAPREQPQVVYVRRNLTVAEILVVLAISCGIVTGIQG
Ga0193988_1087930Ga0193988_10879302F021645MAYGIRKGLEDIASELRGIKNVLSSMWHSRYESGETDVLNPEAYADEYISTEECARRLSVSDQTLRNWMAIGR

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