Metagenome Family F086605

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F086605
Family Type	Metagenome
Number of Sequences	110
Average Sequence Length	50 residues
Representative Sequence	MMVDPWIHGTTDPFPADIGDYICPIAAVFAGGECGAEESVVSVSEIGTKATN
Number of Associated Samples	69
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	1.90 %
% of genes near scaffold ends (potentially truncated)	36.36 %
% of genes from short scaffolds (< 2000 bps)	83.64 %
Associated GOLD sequencing projects	64
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.16

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (59.091 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands (14.546 % of family members)
Environment Ontology (ENVO)	Unclassified (39.091 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (37.273 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 18.75% β-sheet: 0.00% Coil/Unstructured: 81.25%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.16
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.16
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF13683	rve_3	8.18
PF13470	PIN_3	1.82
PF05016	ParE_toxin	1.82
PF00665	rve	1.82
PF00589	Phage_integrase	1.82
PF00210	Ferritin	1.82
PF01850	PIN	0.91
PF12833	HTH_18	0.91
PF00563	EAL	0.91
PF01381	HTH_3	0.91
PF07702	UTRA	0.91
PF13508	Acetyltransf_7	0.91
PF10387	DUF2442	0.91
PF09994	DUF2235	0.91
PF00391	PEP-utilizers	0.91
PF07311	Dodecin	0.91
PF00587	tRNA-synt_2b	0.91
PF13202	EF-hand_5	0.91
PF02596	DUF169	0.91
PF01527	HTH_Tnp_1	0.91
PF01471	PG_binding_1	0.91
PF00872	Transposase_mut	0.91
PF08668	HDOD	0.91
PF14559	TPR_19	0.91
PF13565	HTH_32	0.91
PF01402	RHH_1	0.91
PF05015	HigB-like_toxin	0.91
PF04632	FUSC	0.91
PF04654	DUF599	0.91
PF04055	Radical_SAM	0.91
PF06725	3D	0.91
PF13432	TPR_16	0.91
PF00873	ACR_tran	0.91
PF08843	AbiEii	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG2801	Transposase InsO and inactivated derivatives	Mobilome: prophages, transposons [X]	1.82
COG2826	Transposase and inactivated derivatives, IS30 family	Mobilome: prophages, transposons [X]	1.82
COG3316	Transposase (or an inactivated derivative), DDE domain	Mobilome: prophages, transposons [X]	1.82
COG4584	Transposase	Mobilome: prophages, transposons [X]	1.82
COG1289	Uncharacterized membrane protein YccC	Function unknown [S]	0.91
COG2043	Uncharacterized conserved protein, DUF169 family	Function unknown [S]	0.91
COG2200	EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant)	Signal transduction mechanisms [T]	0.91
COG2253	Predicted nucleotidyltransferase component of viral defense system	Defense mechanisms [V]	0.91
COG3328	Transposase (or an inactivated derivative)	Mobilome: prophages, transposons [X]	0.91
COG3360	Flavin-binding protein dodecin	General function prediction only [R]	0.91
COG3434	c-di-GMP phosphodiesterase YuxH/PdeH, contains EAL and HDOD domains	Signal transduction mechanisms [T]	0.91
COG3549	Plasmid maintenance system killer protein	Defense mechanisms [V]	0.91
COG3821	Uncharacterized membrane protein	Function unknown [S]	0.91
COG4943	Redox-sensing c-di-GMP phosphodiesterase, contains CSS-motif and EAL domains	Signal transduction mechanisms [T]	0.91
COG5001	Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domain	Signal transduction mechanisms [T]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	59.09 %
Unclassified	root	N/A	40.91 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	59.09 %
Unclassified	root	N/A	40.91 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	59.09 %
Unclassified	root	N/A	40.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.91 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	27.27 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.91 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.91 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	7.27 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2.73 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.91 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.91 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.91 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.91 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	1.82 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	0.91 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.91 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.91 %
Nitrosomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales	0.91 %
Rhodocyclales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales	0.91 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.91 %
Gammaproteobacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis	0.91 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.91 %
Syntrophobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales	0.91 %
Verrucomicrobia bacterium IMCC26134	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium IMCC26134	0.91 %
Gammaproteobacteria bacterium SG8_47	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium SG8_47	0.91 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.91 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.91 %
Candidatus Kentron	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Kentron	0.91 %
Rhodocyclaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae	0.91 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.91 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.91 %
Nitrosomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Nitrosomonadaceae	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.91 %
Syntrophobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophobacteraceae	0.91 %
Aromatoleum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae → Aromatoleum	0.91 %
Paraburkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	0.91 %
unclassified Candidatus Kentron	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Kentron → unclassified Candidatus Kentron	0.91 %
Phyllobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Phyllobacterium	0.91 %
Verrucomicrobia bacterium IMCC26134	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium IMCC26134	0.91 %
Gammaproteobacteria bacterium SG8_47	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium SG8_47	0.91 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.91 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.91 %
Nitrosomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Nitrosomonadaceae	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.91 %
Aromatoleum aromaticum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae → Aromatoleum → Aromatoleum aromaticum	0.91 %
Candidatus Kentron sp. SD	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Kentron → unclassified Candidatus Kentron → Candidatus Kentron sp. SD	0.91 %
Phyllobacterium pellucidum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Phyllobacterium → Phyllobacterium pellucidum	0.91 %
Desulforhabdus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophobacteraceae → Desulforhabdus	0.91 %
Paraburkholderia hospita	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia hospita	0.91 %
Verrucomicrobia bacterium IMCC26134	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium IMCC26134	0.91 %
Gammaproteobacteria bacterium SG8_47	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium SG8_47	0.91 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.91 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.91 %
Nitrosomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Nitrosomonadaceae	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.91 %
unclassified Desulforhabdus	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophobacteraceae → Desulforhabdus → unclassified Desulforhabdus	0.91 %
Aromatoleum aromaticum EbN1	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae → Aromatoleum → Aromatoleum aromaticum → Aromatoleum aromaticum EbN1	0.91 %
Candidatus Kentron sp. SD	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Kentron → unclassified Candidatus Kentron → Candidatus Kentron sp. SD	0.91 %
Phyllobacterium pellucidum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Phyllobacterium → Phyllobacterium pellucidum	0.91 %
Paraburkholderia hospita	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia hospita	0.91 %
Verrucomicrobia bacterium IMCC26134	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium IMCC26134	0.91 %
Gammaproteobacteria bacterium SG8_47	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium SG8_47	0.91 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.91 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.91 %
Nitrosomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Nitrosomonadaceae	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.91 %
Desulforhabdus sp. TSK	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophobacteraceae → Desulforhabdus → unclassified Desulforhabdus → Desulforhabdus sp. TSK	0.91 %
Aromatoleum aromaticum EbN1	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae → Aromatoleum → Aromatoleum aromaticum → Aromatoleum aromaticum EbN1	0.91 %
Candidatus Kentron sp. SD	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Kentron → unclassified Candidatus Kentron → Candidatus Kentron sp. SD	0.91 %
Phyllobacterium pellucidum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Phyllobacterium → Phyllobacterium pellucidum	0.91 %
Paraburkholderia hospita	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia hospita	0.91 %
Verrucomicrobia bacterium IMCC26134	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium IMCC26134	0.91 %
Gammaproteobacteria bacterium SG8_47	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium SG8_47	0.91 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.91 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.91 %
Nitrosomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Nitrosomonadaceae	0.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003988\|Ga0055475_10232593	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	585	Open in IMG/M
3300003989\|Ga0055473_10034926	All Organisms → cellular organisms → Bacteria → Proteobacteria	1419	Open in IMG/M
3300004000\|Ga0055458_10088807	Not Available	835	Open in IMG/M
3300004002\|Ga0055477_10042591	All Organisms → cellular organisms → Bacteria → Proteobacteria	1749	Open in IMG/M
3300004005\|Ga0055448_10020347	All Organisms → cellular organisms → Bacteria	2228	Open in IMG/M
3300004007\|Ga0055476_10265850	All Organisms → cellular organisms → Bacteria	602	Open in IMG/M
3300004007\|Ga0055476_10346800	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium IMCC26134	528	Open in IMG/M
3300004010\|Ga0055474_10120605	Not Available	857	Open in IMG/M
3300004010\|Ga0055474_10158842	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	762	Open in IMG/M
3300004012\|Ga0055464_10053125	All Organisms → cellular organisms → Bacteria	1060	Open in IMG/M
3300004018\|Ga0055452_10194867	All Organisms → cellular organisms → Bacteria	675	Open in IMG/M
3300004113\|Ga0065183_10057057	Not Available	1366	Open in IMG/M
3300004113\|Ga0065183_10596031	All Organisms → cellular organisms → Bacteria	565	Open in IMG/M
3300005588\|Ga0070728_10563222	Not Available	592	Open in IMG/M
3300005601\|Ga0070722_10199662	All Organisms → cellular organisms → Bacteria	823	Open in IMG/M
3300005612\|Ga0070723_10316708	Not Available	740	Open in IMG/M
3300005612\|Ga0070723_10541524	All Organisms → cellular organisms → Bacteria	579	Open in IMG/M
3300005920\|Ga0070725_10569797	Not Available	513	Open in IMG/M
3300007864\|Ga0105749_1182030	Not Available	508	Open in IMG/M
3300009509\|Ga0123573_10002018	All Organisms → cellular organisms → Bacteria → Proteobacteria	24549	Open in IMG/M
3300009509\|Ga0123573_10276915	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Phyllobacterium → Phyllobacterium pellucidum	1631	Open in IMG/M
3300009509\|Ga0123573_10661387	All Organisms → cellular organisms → Bacteria	984	Open in IMG/M
3300009528\|Ga0114920_10392073	Not Available	943	Open in IMG/M
3300009788\|Ga0114923_11427028	Not Available	541	Open in IMG/M
3300010392\|Ga0118731_100673491	All Organisms → cellular organisms → Bacteria → Proteobacteria	6015	Open in IMG/M
3300010392\|Ga0118731_102922782	Not Available	770	Open in IMG/M
3300010392\|Ga0118731_108253560	All Organisms → cellular organisms → Bacteria	784	Open in IMG/M
3300010392\|Ga0118731_108873160	All Organisms → cellular organisms → Bacteria	812	Open in IMG/M
3300010392\|Ga0118731_109164760	All Organisms → cellular organisms → Bacteria	753	Open in IMG/M
3300010392\|Ga0118731_109792012	All Organisms → cellular organisms → Bacteria	718	Open in IMG/M
3300010392\|Ga0118731_110682376	Not Available	540	Open in IMG/M
3300010412\|Ga0136852_10125124	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium SG8_47	2618	Open in IMG/M
3300010430\|Ga0118733_100099207	All Organisms → cellular organisms → Bacteria → Proteobacteria	5884	Open in IMG/M
3300010430\|Ga0118733_102647846	Not Available	990	Open in IMG/M
3300010430\|Ga0118733_103063849	Not Available	915	Open in IMG/M
3300010430\|Ga0118733_104062055	All Organisms → cellular organisms → Bacteria	785	Open in IMG/M
3300010430\|Ga0118733_104395230	Not Available	753	Open in IMG/M
3300010430\|Ga0118733_108998162	Not Available	515	Open in IMG/M
3300010430\|Ga0118733_109340669	Not Available	505	Open in IMG/M
3300011118\|Ga0114922_11428406	All Organisms → cellular organisms → Bacteria	557	Open in IMG/M
3300019715\|Ga0193966_1058323	Not Available	508	Open in IMG/M
3300019725\|Ga0193980_1021046	All Organisms → cellular organisms → Bacteria	761	Open in IMG/M
3300019727\|Ga0193976_1042021	Not Available	595	Open in IMG/M
3300019740\|Ga0193988_1008790	All Organisms → cellular organisms → Bacteria	1239	Open in IMG/M
3300019747\|Ga0193978_1048462	Not Available	610	Open in IMG/M
3300019748\|Ga0194018_1089611	All Organisms → cellular organisms → Bacteria	521	Open in IMG/M
3300021465\|Ga0193947_1057020	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Kentron → unclassified Candidatus Kentron → Candidatus Kentron sp. SD	611	Open in IMG/M
3300022413\|Ga0224508_10316607	All Organisms → cellular organisms → Bacteria → Proteobacteria	996	Open in IMG/M
(restricted) 3300022913\|Ga0233404_10020659	Not Available	1486	Open in IMG/M
(restricted) 3300022938\|Ga0233409_10304234	Not Available	555	Open in IMG/M
(restricted) 3300023085\|Ga0233406_10090006	Not Available	520	Open in IMG/M
(restricted) 3300023089\|Ga0233408_10142858	All Organisms → cellular organisms → Bacteria → Proteobacteria	543	Open in IMG/M
(restricted) 3300023210\|Ga0233412_10149279	All Organisms → cellular organisms → Bacteria → Proteobacteria	1001	Open in IMG/M
(restricted) 3300024052\|Ga0255050_10136950	Not Available	587	Open in IMG/M
(restricted) 3300024062\|Ga0255039_10014583	All Organisms → cellular organisms → Bacteria → Proteobacteria	2735	Open in IMG/M
(restricted) 3300024338\|Ga0255043_10099379	Not Available	953	Open in IMG/M
(restricted) 3300024338\|Ga0255043_10313455	All Organisms → cellular organisms → Bacteria	544	Open in IMG/M
(restricted) 3300024340\|Ga0255042_10056638	Not Available	1000	Open in IMG/M
(restricted) 3300024518\|Ga0255048_10175138	All Organisms → cellular organisms → Bacteria	1050	Open in IMG/M
(restricted) 3300024520\|Ga0255047_10426016	Not Available	668	Open in IMG/M
(restricted) 3300024529\|Ga0255044_10120339	All Organisms → cellular organisms → Bacteria → Proteobacteria	976	Open in IMG/M
(restricted) 3300024529\|Ga0255044_10136735	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	925	Open in IMG/M
3300025555\|Ga0210121_1018397	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophobacteraceae → Desulforhabdus → unclassified Desulforhabdus → Desulforhabdus sp. TSK	1228	Open in IMG/M
3300025563\|Ga0210112_1022564	All Organisms → cellular organisms → Bacteria	1372	Open in IMG/M
3300025593\|Ga0210096_1069860	All Organisms → cellular organisms → Bacteria	995	Open in IMG/M
3300025817\|Ga0210144_1027640	All Organisms → cellular organisms → Bacteria → Proteobacteria	1796	Open in IMG/M
3300025823\|Ga0210123_1091248	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	935	Open in IMG/M
3300025883\|Ga0209456_10000675	All Organisms → cellular organisms → Bacteria	17928	Open in IMG/M
3300025883\|Ga0209456_10018981	All Organisms → cellular organisms → Bacteria → Proteobacteria	3073	Open in IMG/M
3300025883\|Ga0209456_10031160	All Organisms → cellular organisms → Bacteria	2399	Open in IMG/M
3300025883\|Ga0209456_10074981	All Organisms → cellular organisms → Bacteria	1506	Open in IMG/M
3300025883\|Ga0209456_10199826	Not Available	853	Open in IMG/M
3300025883\|Ga0209456_10427070	All Organisms → cellular organisms → Bacteria	530	Open in IMG/M
3300025895\|Ga0209567_10608146	Not Available	530	Open in IMG/M
(restricted) 3300027837\|Ga0255041_10196747	Not Available	708	Open in IMG/M
3300027858\|Ga0209013_10553378	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	611	Open in IMG/M
(restricted) 3300027865\|Ga0255052_10049510	All Organisms → cellular organisms → Bacteria	2085	Open in IMG/M
(restricted) 3300027881\|Ga0255055_10724721	All Organisms → cellular organisms → Bacteria	530	Open in IMG/M
3300027917\|Ga0209536_100033283	All Organisms → cellular organisms → Bacteria	6975	Open in IMG/M
3300027917\|Ga0209536_101688990	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Nitrosomonadaceae	766	Open in IMG/M
(restricted) 3300027996\|Ga0233413_10368549	Not Available	625	Open in IMG/M
3300028598\|Ga0265306_10333361	All Organisms → cellular organisms → Bacteria	819	Open in IMG/M
3300028598\|Ga0265306_10545155	Not Available	637	Open in IMG/M
3300028598\|Ga0265306_10821000	Not Available	515	Open in IMG/M
3300028599\|Ga0265309_10359511	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	947	Open in IMG/M
3300028599\|Ga0265309_10926887	Not Available	599	Open in IMG/M
3300028600\|Ga0265303_10147706	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1767	Open in IMG/M
3300028600\|Ga0265303_10576872	All Organisms → cellular organisms → Bacteria	910	Open in IMG/M
3300028600\|Ga0265303_10635612	Not Available	867	Open in IMG/M
3300028600\|Ga0265303_10753292	Not Available	797	Open in IMG/M
3300028600\|Ga0265303_11221763	Not Available	625	Open in IMG/M
3300028600\|Ga0265303_11635156	Not Available	538	Open in IMG/M
3300031665\|Ga0316575_10087727	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia hospita	1258	Open in IMG/M
3300032136\|Ga0316201_10859719	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae → Aromatoleum → Aromatoleum aromaticum → Aromatoleum aromaticum EbN1	766	Open in IMG/M
3300032136\|Ga0316201_11062142	Not Available	679	Open in IMG/M
3300032231\|Ga0316187_10074807	All Organisms → cellular organisms → Bacteria → Proteobacteria	2675	Open in IMG/M
3300032251\|Ga0316198_10071893	All Organisms → cellular organisms → Bacteria → Proteobacteria	2066	Open in IMG/M
3300032252\|Ga0316196_10171909	All Organisms → cellular organisms → Bacteria	978	Open in IMG/M
3300032259\|Ga0316190_10516965	Not Available	803	Open in IMG/M
3300032260\|Ga0316192_10463430	All Organisms → cellular organisms → Bacteria → Proteobacteria	864	Open in IMG/M
3300032262\|Ga0316194_10134870	All Organisms → cellular organisms → Bacteria → Proteobacteria	1590	Open in IMG/M
3300032272\|Ga0316189_10873755	All Organisms → cellular organisms → Bacteria → Proteobacteria	682	Open in IMG/M
3300032272\|Ga0316189_11491114	Not Available	509	Open in IMG/M
3300032273\|Ga0316197_10243060	All Organisms → cellular organisms → Bacteria	1024	Open in IMG/M
3300033429\|Ga0316193_11219797	All Organisms → cellular organisms → Bacteria	598	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.09%
Host-Associated	Host-Associated	0.91%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	99.09%
Plants	Host-Associated → Plants	0.91%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	89.09%
Freshwater	Environmental → Aquatic → Freshwater	6.36%
Sediment	Environmental → Aquatic → Sediment	3.64%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.91%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	30.91%
Wetlands	Environmental → Aquatic → Marine → Wetlands	14.55%
Subtidal Zone	Environmental → Aquatic → Marine → Subtidal Zone	12.73%
Inlet	Environmental → Aquatic → Marine → Inlet	10.00%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	8.18%
Sediment	Environmental → Aquatic → Freshwater → Sediment	6.36%
Strait	Environmental → Aquatic → Marine → Strait	6.36%
Oceanic	Environmental → Aquatic → Marine → Oceanic	4.55%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.64%
Sediment	Environmental → Aquatic → Marine → Sediment	0.91%
Oil Seeps	Environmental → Aquatic → Marine → Oil Seeps	0.91%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Sediment	Environmental → Aquatic → Marine → Coastal → Sediment	30.00%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	14.55%
Sediment	Environmental → Aquatic → Marine → Subtidal Zone → Sediment	12.73%
Unclassified	Environmental → Aquatic → Marine → Inlet → Unclassified	10.00%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	8.18%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	6.36%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	6.36%
Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment	4.55%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.64%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	0.91%
Unclassified	Environmental → Aquatic → Marine → Sediment → Unclassified	0.91%
Unclassified	Environmental → Aquatic → Marine → Oil Seeps → Unclassified	0.91%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	14.55%
Sediment	Environmental → Aquatic → Marine → Subtidal Zone → Sediment → Sediment	12.73%
Marine Sediment	Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment	11.82%
Seawater	Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater	10.00%
Pelagic Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine	8.18%
Marine	Environmental → Aquatic → Marine → Coastal → Sediment → Marine	7.27%
Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment	6.36%
Worm Burrow	Environmental → Aquatic → Marine → Coastal → Sediment → Worm Burrow	6.36%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	6.36%
Sediment	Environmental → Aquatic → Marine → Coastal → Sediment → Sediment	4.55%
Mangrove Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Mangrove Sediment	3.64%
Deep Subsurface	Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface	2.73%
Marine Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment	1.82%
Estuary Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water	0.91%
Sediment	Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment	0.91%
Marine	Environmental → Aquatic → Marine → Oil Seeps → Unclassified → Marine	0.91%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003988	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Muzzi_CordB_D2	Environmental	Open in IMG/M
3300003989	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Muzzi_CordA_D2	Environmental	Open in IMG/M
3300004000	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_CattailNLB_D2	Environmental	Open in IMG/M
3300004002	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Muzzi_PWA_D2	Environmental	Open in IMG/M
3300004005	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - China_Galinas_PWA_D2	Environmental	Open in IMG/M
3300004007	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Muzzi_CordC_D2	Environmental	Open in IMG/M
3300004010	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Muzzi_PWA_D1	Environmental	Open in IMG/M
3300004012	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_ThreeSqC_D2	Environmental	Open in IMG/M
3300004018	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - China_Galinas_PWC_D2	Environmental	Open in IMG/M
3300004113	Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - COGITO 998_met_12 (version 2)	Environmental	Open in IMG/M
3300005588	Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdDd47.1	Environmental	Open in IMG/M
3300005601	Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdAd00.1	Environmental	Open in IMG/M
3300005612	Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdAd00.2	Environmental	Open in IMG/M
3300005920	Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdDd00.2	Environmental	Open in IMG/M
3300007864	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1461B_3.0um	Environmental	Open in IMG/M
3300009509	Mangrove sediment microbial communities from Mai Po Nature Reserve Marshes in Hong Kong, China - Maipo_11	Environmental	Open in IMG/M
3300009528	Deep subsurface microbial communities from South Pacific Ocean to uncover new lineages of life (NeLLi) - Chile_00310 metaG	Environmental	Open in IMG/M
3300009788	Deep subsurface microbial communities from Indian Ocean to uncover new lineages of life (NeLLi) - Sumatra_00157 metaG	Environmental	Open in IMG/M
3300010392	Coastal sediment microbial communities from Rhode Island, USA. Combined Assembly of Gp0121717, Gp0123912, Gp0123935, Gp0139423, Gp0139424, Gp0139388, Gp0139387, Gp0139386, Gp0139385	Environmental	Open in IMG/M
3300010412	Mangrove sediment microbial communities from Mai Po Nature Reserve Marshes in Hong Kong, China - Maipo_10	Environmental	Open in IMG/M
3300010430	Marine sediment microbial communities from Gulf of Thailand under amendment with organic carbon and nitrate - JGI co-assembly of 8 samples	Environmental	Open in IMG/M
3300011118	Deep subsurface microbial communities from Aarhus Bay to uncover new lineages of life (NeLLi) - Aarhus_00045 metaG	Environmental	Open in IMG/M
3300019715	Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? BRT_2-3_MG	Environmental	Open in IMG/M
3300019725	Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? BLT_1-2_MG	Environmental	Open in IMG/M
3300019727	Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? FRT_3-4_MG	Environmental	Open in IMG/M
3300019740	Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? FRC_4-5_MG	Environmental	Open in IMG/M
3300019747	Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? FRT_5-6_MG	Environmental	Open in IMG/M
3300019748	Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? BRC_4-5_MG	Environmental	Open in IMG/M
3300021465	Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? FRT_0-1_MG	Environmental	Open in IMG/M
3300022413	Sediment microbial communities from San Francisco Bay, California, United States - SF_Jan12_sed_USGS_21	Environmental	Open in IMG/M
3300022913 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_oxic_2_MG	Environmental	Open in IMG/M
3300022938 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_oxic_13_MG	Environmental	Open in IMG/M
3300023085 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_oxic_5_MG	Environmental	Open in IMG/M
3300023089 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_oxic_11_MG	Environmental	Open in IMG/M
3300023210 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_4_MG	Environmental	Open in IMG/M
3300024052 (restricted)	Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_5	Environmental	Open in IMG/M
3300024062 (restricted)	Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_1	Environmental	Open in IMG/M
3300024338 (restricted)	Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_9	Environmental	Open in IMG/M
3300024340 (restricted)	Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_5	Environmental	Open in IMG/M
3300024518 (restricted)	Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_2	Environmental	Open in IMG/M
3300024520 (restricted)	Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_1	Environmental	Open in IMG/M
3300024529 (restricted)	Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_21	Environmental	Open in IMG/M
3300025555	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_ThreeSqB_D1 (SPAdes)	Environmental	Open in IMG/M
3300025563	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_ThreeSqC_D2 (SPAdes)	Environmental	Open in IMG/M
3300025593	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - China_Galinas_PWA_D2 (SPAdes)	Environmental	Open in IMG/M
3300025817	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Muzzi_PWA_D2 (SPAdes)	Environmental	Open in IMG/M
3300025823	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Muzzi_PWB_D2 (SPAdes)	Environmental	Open in IMG/M
3300025883	Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - COGITO 998_met_11 (SPAdes)	Environmental	Open in IMG/M
3300025895	Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - COGITO 998_met_12 (SPAdes)	Environmental	Open in IMG/M
3300027837 (restricted)	Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_3	Environmental	Open in IMG/M
3300027858	Oil polluted marine microbial communities from Coal Oil Point, Santa Barbara, California, USA - Sample 2 (SPAdes)	Environmental	Open in IMG/M
3300027865 (restricted)	Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_21	Environmental	Open in IMG/M
3300027881 (restricted)	Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_27	Environmental	Open in IMG/M
3300027917	Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-2-8_12 (SPAdes)	Environmental	Open in IMG/M
3300027996 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_6_MG	Environmental	Open in IMG/M
3300028598	Marine sediment microbial communities from subtidal zone of North Sea - Hel_20160420 (Illumina Assembly)	Environmental	Open in IMG/M
3300028599	Marine sediment microbial communities from subtidal zone of North Sea - Hel_20160524 (Illumina Assembly)	Environmental	Open in IMG/M
3300028600	Marine sediment microbial communities from subtidal zone of North Sea - Hel_20160317 (Illumina Assembly)	Environmental	Open in IMG/M
3300031665	Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3	Host-Associated	Open in IMG/M
3300032136	Coastal sediment microbial communities from Delaware Bay, Delaware, United States - CS-6 worm burrow	Environmental	Open in IMG/M
3300032231	Coastal sediment microbial communities from Maine, United States - Cross River worm burrow 1	Environmental	Open in IMG/M
3300032251	Coastal sediment microbial communities from Oude Bieten Haven, Netherlands - site A anoxic	Environmental	Open in IMG/M
3300032252	Coastal sediment microbial communities from Maine, United States - Eddy sediment 2 cm	Environmental	Open in IMG/M
3300032259	Coastal sediment microbial communities from Maine, United States - Eddy worm burrow 2	Environmental	Open in IMG/M
3300032260	Coastal sediment microbial communities from Maine, United States - Merrow Island worm burrow	Environmental	Open in IMG/M
3300032262	Coastal sediment microbial communities from Maine, United States - Cross River sediment 1	Environmental	Open in IMG/M
3300032272	Coastal sediment microbial communities from Maine, United States - Lowes Cove worm burrow	Environmental	Open in IMG/M
3300032273	Coastal sediment microbial communities from Oude Bieten Haven, Netherlands - site A oxic	Environmental	Open in IMG/M
3300033429	Coastal sediment microbial communities from Maine, United States - Merrow Island sediment 2	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0055475_102325931	3300003988	Natural And Restored Wetlands	THGTVNPVYSDADNYVCLIAAVFAGGECGAAKSVVSVSEIRTKA*
Ga0055473_100349263	3300003989	Natural And Restored Wetlands	MVDPWINDTANPVPGDVDNYICPIAAVFTDGAFGATESVVSV*
Ga0055458_100888072	3300004000	Natural And Restored Wetlands	MVDPWNHGTVTPVYSDADNYVCPIAAVFAGGECGAAKSVASVSEIRTKAKESGLLTGCSGAA*
Ga0055477_100425912	3300004002	Natural And Restored Wetlands	MMVDPWNHGTVNPVYSDVDSYLCPIAVVFTGGECGAAKSVASVSEIRTKDKNQAS*
Ga0055448_100203476	3300004005	Natural And Restored Wetlands	MVDPWKHGTVNPVYSDVDNYFYPIAVGIAGGECGAAKSVASV
Ga0055476_102658501	3300004007	Natural And Restored Wetlands	MMVDPWINDTANPVPGDVGDYICPIAAVFTEGEFGATESVVSV*
Ga0055476_103468002	3300004007	Natural And Restored Wetlands	MVVDPWIHDTADPAPADVGDYICPIAVVFIDGECGAAESVVSV*
Ga0055474_101206051	3300004010	Natural And Restored Wetlands	MMVDPWINDTANPVPGDVDNYICPIAAVFTDGAFGATESVVSV*
Ga0055474_101588422	3300004010	Natural And Restored Wetlands	MVDPWTHGTVNPVYSDADNYVCLIAAVFAGGECGAAKSVVSVSEIRTKA*
Ga0055464_100531251	3300004012	Natural And Restored Wetlands	MVVDPWIHDKADPVPADVGDYICPIAAVFTDGECGAAESV
Ga0055452_101948672	3300004018	Natural And Restored Wetlands	FFWMMVDPWINDTANPVPGDVDNYICPIAAVFTDGAFGATESVVSV*
Ga0065183_100570573	3300004113	Pelagic Marine	VTIVDPRIHGTADPVHTDVGDYIGPIATVFAGGECGAAESVVPVSEI
Ga0065183_105960311	3300004113	Pelagic Marine	MMVDPWIHDTADPVHADVGDYIYPIAAVFAGGEFGAAESVVSVSEIGTKAAN*
Ga0070728_105632221	3300005588	Marine Sediment	FWMMVDPWIHDTANPVYSDGGDYICPISAVFTGGDCGAAKSVVSVSKIRTKAKNQAY*
Ga0070722_101996622	3300005601	Marine Sediment	MMVDPWIHDTANPFYSDVGEYICPIAAVFTGGECGATESVVSVSKIRTKAKN*
Ga0070723_103167081	3300005612	Marine Sediment	MMVDPWIHGTTDPFPADIGDYICPITAVFAGGECGAAESVVSVSEIRTKAKN*
Ga0070723_105415242	3300005612	Marine Sediment	MMIDPCIHGTVDPVSADIGDYIGPIPVVFAGGKCGITESVVSVS*
Ga0070725_105697971	3300005920	Marine Sediment	MVDPWTHDTANPFYFDVGDYICPIAAVFAGGECGAAESVVPVSEIGTKATN*
Ga0105749_11820301	3300007864	Estuary Water	MVDPWAHDTANPLYSEFGDYICPIAAVFTGGECGAAESVVSVSKIRTEAKNQAC*
Ga0123573_100020188	3300009509	Mangrove Sediment	MIHGTTDPVQIEVGDYIRPVAAVFAGGECGAAQSVVSVSEIRTKAKN*
Ga0123573_102769152	3300009509	Mangrove Sediment	MMVDPWIHDTADPVPADIVDYLCPIAVVFAGGECGAAESVVSVSKIKTKAKNQTH*
Ga0123573_106613872	3300009509	Mangrove Sediment	PWIHDTADPIPADIVDYICPIAAVFAGGECGATESVVSVSKIRTKAKNQACR*
Ga0114920_103920732	3300009528	Deep Subsurface	MMVNPWIHGTANPVHADVGDYIYPIAAVFAGGECGAAESVVSVSEIGVKTTN*
Ga0114923_114270281	3300009788	Deep Subsurface	MMVDPWIHGTAHPVHADVGDYIGPIAVVFAGGECGAAESVVSVSEIGTKAK
Ga0118731_1006734912	3300010392	Marine	MIVDPWIHGMSIPVFSYLGDYICPIAAVFAGRECGAAESVVSVSEIGTKATN*
Ga0118731_1029227822	3300010392	Marine	MMIDPCLHGKADPFHADIGDYICPIAAVFAGKECGAEESVVSV*
Ga0118731_1044398451	3300010392	Marine	MMVDPWIHATTDPFPADIGDYICPIAAVFAGRECGAEE
Ga0118731_1082535601	3300010392	Marine	MMIDPCIHGKADPVHAEVGDYICPIAAVFAGRECGAEESVVSVSEIGTKATN*
Ga0118731_1088731603	3300010392	Marine	DDSIAYYWMMVDPWNHSTADPVRADVGDHIGPVAAFFAGGERGAAESAVLISKVGI*
Ga0118731_1091647601	3300010392	Marine	MMIDPCIHGKADPVHADVGDYICPIAAVFAGRECGAEESVVSVSEIGTKATN*
Ga0118731_1097920122	3300010392	Marine	MMIDPCIHGKADPVHADVDGYIGPVAVIFAGGECGAAESVVSVSAIGTKATN*
Ga0118731_1106823761	3300010392	Marine	MLIDPCIHGSADLVPAAIGDYICPITAVFAGGECGAAESVVSVPEIRTKAKNNAC*
Ga0136852_101251242	3300010412	Mangrove Sediment	MMVDPWIHDTADPVPADIVDYICPIAVVFAGGECGAAESVVSVSKIKTKAKNQTH*
Ga0118733_10009920710	3300010430	Marine Sediment	YGTADPIHSDVGDYIGPIAAVFAGRECGAAESVVSVSEIGTKATN*
Ga0118733_1026478461	3300010430	Marine Sediment	MMVDAWMHGTADPIHADVGDYICPISAVFAGRECGAEESVVSVSEIGTKATNQAC*
Ga0118733_1030638492	3300010430	Marine Sediment	MIVDPWIHGASIPVFSYLGDYICPIAAVFADRECGAAESVVSVSEIRTKTKNQAC*
Ga0118733_1030895851	3300010430	Marine Sediment	MRVDPWIYSTTNPFPADIGDYICPITAVFAGGECGAAESV
Ga0118733_1040620552	3300010430	Marine Sediment	FLMMIDPCMHGTADPVPADIGDYICPIAAVFAGGECSAEESVVSVSEIGTKAKNQAC*
Ga0118733_1043952302	3300010430	Marine Sediment	MVDPWTHDTANPFYSDVGDYICPIAAVFTGGECGAAESV
Ga0118733_1089981621	3300010430	Marine Sediment	SVDSIAYFWMMVDPWIHGTADPVHTDVDDFICPIATVFAGGECGAAESVVSVSEIGTKAKN*
Ga0118733_1093406691	3300010430	Marine Sediment	PVDSIAYFGMMVDPWIHGKSDPIHADVGDYIYPIPAVFAVGECGAAESVVAVSKIGTKATN*
Ga0114922_114284061	3300011118	Deep Subsurface	PVGSVAFFWMMVDPLIHDTVDPVPADVGDYICPIAAVFTGGECGAAESVVSVSKIRTKTKYQAC*
Ga0193966_10583232	3300019715	Sediment	MMVDPWIYGTANPVYSDVDNYICPIAAVFAGGECGVAESVVSVSEIRTKTKN
Ga0193980_10210462	3300019725	Sediment	MMVDPWIHSTTDPFPADIGDYICPITAVFAGGEYGAAESVVSVSEIGTKAKN
Ga0193976_10420212	3300019727	Sediment	PVDSVAYFWMMVDPWIHSTTDPFPADIGDYICPITAVFAGGECGAAESVVSVSEIGTKAT
Ga0193988_10087901	3300019740	Sediment	MMVDPLIHDTADPVPADVGDYICPIAVVFTGGECGAAESVVSVSKVSTKAKYQAC
Ga0193978_10484622	3300019747	Sediment	MIVDPWIHDTADPVPADVADYICPIAAVFTGGECGAAESVVSV
Ga0194018_10896112	3300019748	Sediment	MMVAPWIHGTTDPFPADIGDYICPITAVFAGGECGAAESVVSVSEIGTKATN
Ga0193947_10570202	3300021465	Sediment	MMVDPWIHDTADPVPADVADYICPIAAVFTGGECGAAESVVSV
Ga0224508_103166072	3300022413	Sediment	MIDPWIYDTADPVHADVGDYIYPIAAVFAGGECGAAESAVSVSEIGT
(restricted) Ga0233404_100206591	3300022913	Seawater	MIVDPWIHATSIPVFSYLGDYICPIAAVFTGRECGVAESIVAVSKIKKKAKNQAN
(restricted) Ga0233409_103042341	3300022938	Seawater	MIVDPWIHGASIPVFSYLGDYICPIAAVFADRECGAAESVVSVSEIRTKTKNQAC
(restricted) Ga0233406_100900061	3300023085	Seawater	LMMIDPCIHGKTYSVPADICDYICPIAAVFAGGECGAAESVVSVSEIGTKAKN
(restricted) Ga0233408_101428582	3300023089	Seawater	MMIDPCMHGTADPVPADIGDYICPIAAVFAGGECGAEESVVSVSEIGTKTNNQAC
(restricted) Ga0233412_101492793	3300023210	Seawater	MAYFLMMIDPCMHGTADPVPADIGDYICPIAAVFAGGKCGITESVVSVSAQASRAS
(restricted) Ga0255050_101369501	3300024052	Seawater	MMVDPWIHGTTDPVHAYVCDYICPIAAVFAGGECGAAESVVSVSEIGTKAKN
(restricted) Ga0255039_100145833	3300024062	Seawater	MMIDPCIHGKTYSVPADICDYICPIAAVFAGGECGAAESVVSVSEIGTKAKN
(restricted) Ga0255043_100993792	3300024338	Seawater	VDSIAYFLMMIDPCMHGTADPVPADIGDYICPIAAVFAGGECGAEESVVSVSEIGTKAKN
(restricted) Ga0255043_103134552	3300024338	Seawater	MVDPWIYGTADPIHSDVGDYIGPIAAVFAGGECGAAESVDSVSEIRTKATN
(restricted) Ga0255042_100566381	3300024340	Seawater	MMVDPWIYGTADPIHSDVGDYIGPIAAVFAGRECGAAESVVSVSEIGTKATN
(restricted) Ga0255048_101751382	3300024518	Seawater	MMVDPRIHGTADPVHADVGDYIGPIAAFFAGGECGAAESVVPVSEIETKARN
(restricted) Ga0255047_104260163	3300024520	Seawater	VTIVDPRTHGTADPVHVDVGDYICPIAVVFTSGECGAAESVVSVSEIGAKITNQAC
(restricted) Ga0255044_101203391	3300024529	Seawater	MVDPWIHGTTDPFPADIGDYICPITAVFAGGECGAAESVV
(restricted) Ga0255044_101367351	3300024529	Seawater	MAYFLMMIDPCMHGTADPVPADIGDYICPIAAVFAGGKCGITESVVSV
Ga0210121_10183972	3300025555	Natural And Restored Wetlands	MVDPWNHGTVTPVYSDADNYVCPIAAVFAGGECGAAKSVASVSEIRTKAKESGLLTGCSGAA
Ga0210112_10225641	3300025563	Natural And Restored Wetlands	MMVDSWIHGTADPVPAVVGGYICPIAAVFTDGECGAAESV
Ga0210096_10698601	3300025593	Natural And Restored Wetlands	MVDPWKHGTVNPVYSDVDNYFYPIAVGIAGGECGAAKSVASVSEIRTEAKNPAC
Ga0210144_10276403	3300025817	Natural And Restored Wetlands	MVDPWTHGTVNPVYSDADNYVCLIAAVFAGGECGAAKSVVSVSEIRTKA
Ga0210123_10912482	3300025823	Natural And Restored Wetlands	MVDPWINDTANPVPGDVDNYICPIAAVFTDGAFGATESVVSV
Ga0209456_1000067518	3300025883	Pelagic Marine	MMVDPWIHGTADPVHADVGGYIGPIAAVFAGGEPGAAELVVSLSEIGTKATN
Ga0209456_100189811	3300025883	Pelagic Marine	MMVDPWAHGTGDPVHADVGDYICPLAAIFASGECGAAESVVSVSEIGTKATN
Ga0209456_100311603	3300025883	Pelagic Marine	MMVDPWMHGTADPIHADVGDDIDPIAAIFAGGERSAPESVVSVSEIGTKATNSAC
Ga0209456_100749812	3300025883	Pelagic Marine	MVDPLSHGTLDPLYADFGDYISPIAAVFAGGECGAAESVASVSEIGTKAKN
Ga0209456_101998262	3300025883	Pelagic Marine	WMVVDPWIYGTADPVHVDVGDYIGPIAAVFAGGECGAAKSVVSVSEIWTKPTN
Ga0209456_104270701	3300025883	Pelagic Marine	MMVDPWIHDTADPVHADVGDYIYPIAAVFAGGEFGAAESVVSVSEIGTKAAN
Ga0209567_106081461	3300025895	Pelagic Marine	MVDPWIHGTVDPVHADVGDYIGPIAAVFAGGECGAAKSVVSVSEIWTKPTN
(restricted) Ga0255041_101967472	3300027837	Seawater	MMIDPCIHGTVDPVSADIGDYIGPIPVVFAGGKCGITESVVSVS
Ga0209013_105533781	3300027858	Marine	MMVDPWIHGTAHPVHADVGDYIGPIAAVFAGGECGAAESVVPVSEIETKAKN
(restricted) Ga0255052_100495102	3300027865	Seawater	MMVDPWIYGTADPVYADVGDYIGPIAVVFTSGECGAAESVVSVSEIGAKITNQAC
(restricted) Ga0255055_107247211	3300027881	Seawater	MVDPWIHGKADPVYADVGDYICPIAVVFTGGECGAAESVVSVPEIRTKATNQAC
Ga0209536_1000332832	3300027917	Marine Sediment	MMVDPWIYGTANPVYADVDNYICPIAAVFAGGECGAAESVVAVSEIRTKTKN
Ga0209536_1016889903	3300027917	Marine Sediment	MVDPWTHDAANPFYFDVGDYISPIAAVFTGGECGAAESVVSVSTIRAKAKDYAR
(restricted) Ga0233413_103685491	3300027996	Seawater	MMVDPCIHGTTDPVHFDIGDYICPIAAVFAGRECGAEESVVSVSEIGTKATN
Ga0265306_103333613	3300028598	Sediment	WMMVDPWIHGTAHPVHADVGDYIGPIATVFAGGEGGAAESVVPVSEIGTKATN
Ga0265306_105451551	3300028598	Sediment	MIIDPCIHDTTNQVSFDIGDYICPVPAVFAGGECGTAESVESISEIGTKATN
Ga0265306_108210002	3300028598	Sediment	MMIDPCIHGTADPVLADVGDYISPIAAVFAGGECDAEKSFVPVSEIGTKARN
Ga0265309_103595111	3300028599	Sediment	MMVDPWIHGTTDPVPADIGDYIGPIAAVFAGGECGAAESVVAVSEIRTKAKNNAC
Ga0265309_108187131	3300028599	Sediment	MVDPWIHDTANPVYSDIGDYICPITAVFAGGECND
Ga0265309_109268871	3300028599	Sediment	MMVDPYIHGKANPFYSVFGDYICPIAAVFAGGECGAAESVVSVSEIRAKTKN
Ga0265309_109339211	3300028599	Sediment	VDPFIHGTADPLAADIGDYICPVSAVFAGGECGDTESVISE
Ga0265303_101477062	3300028600	Sediment	MIDPCIHGTADPLSADIGDYICPIAAVFAGGECGAEESVGYVS
Ga0265303_105768722	3300028600	Sediment	MIDPCLHGKADPFPADIGDYICPITAVFAGGECGAAESVVSV
Ga0265303_106356121	3300028600	Sediment	MMIDPCIHGKADPVPADIGDYICPIAAVFAGGECGAAESVVSVSEIGTKAKN
Ga0265303_106668021	3300028600	Sediment	MMVNPWIHGTVNPVYFDIGDYICPIATVFTGGECGA
Ga0265303_107532921	3300028600	Sediment	MVDPWIHGTFNPVFSDVGDYICLIAVVFTGGECGAAESVVSVSEIRAKAKN
Ga0265303_112217631	3300028600	Sediment	MMVDPWIHGTVDPVHVDVGDYIGPIVAVFAGGECGAAESVVSVSEIGTKATN
Ga0265303_116351562	3300028600	Sediment	MMVDLWIHDTVDPVHADVGDYVGPIAAVFAGGECGTAESVIFVSEIGTKATN
Ga0316575_100877273	3300031665	Rhizosphere	KPVDYIAYYWMMFDPCIHDTANLFPADIGDNICPIAAVFAGLECSAAESVVSVSEIRTKAKN
Ga0316201_108597192	3300032136	Worm Burrow	MFDPWIHSTSNPVCSDVGEYICPIAAVFAGGECGATE
Ga0316201_110621421	3300032136	Worm Burrow	MVDPWVHGTTDPFPADIGYYICPVTAVFAGGECGAAESVVSVSE
Ga0316187_100748072	3300032231	Worm Burrow	MMVDPWMYGAANPVFSDFGDYVYPIAAVFTGGECSAAESVVSV
Ga0316198_100718931	3300032251	Sediment	MMVDPWIHDTTDPVYSDFGDYICPIAAVFTGGECGAAESVVSVSEIWAKAKN
Ga0316196_101719092	3300032252	Sediment	MMVDPWIHDTTDPVYSDVGDYICPIAAVFAGGECGAAESVVSV
Ga0316190_105169652	3300032259	Worm Burrow	MIDPWIHDTVDSVPADIVDYIRTIAAVFAGGERGTAESVVSVSNIWKKAKNSACGPTALVLAREIMG
Ga0316192_104634302	3300032260	Worm Burrow	MMVDPWIHDTADPVPVDIDDYICQIAAVFTGRECGAAVSVDSVSEIGTKAKN
Ga0316194_101348701	3300032262	Sediment	GSVAFFWMMVDPWIHDTADPVPADVGDYICPIAAVFTGGECGVAESVVSVSEIGTKATN
Ga0316189_108737552	3300032272	Worm Burrow	MMVDSWTQGTANPVPADIGDYICQIAAVFAGGECSAAESVDSVSEIRTNNNQLSH
Ga0316189_114911141	3300032272	Worm Burrow	MMVDPWIHVTADPVHADVGDYICPIAAVFAGGECGAAESVVSLSEIGTKAKNLAC
Ga0316197_102430603	3300032273	Sediment	MVDPWIHDTADPVPADVADYICPIAAVFTGGECGAAES
Ga0316193_112197972	3300033429	Sediment	MMVDPWIHGTTDPFPADIGDYICPIAAVFAGGECGAEESVVSVSEIGTKATN

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters