NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300019736

3300019736: Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? BRC_5-6_MG



Overview

Basic Information
IMG/M Taxon OID3300019736 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0129088 | Gp0217685 | Ga0194019
Sample NameSediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? BRC_5-6_MG
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size128517084
Sequencing Scaffolds38
Novel Protein Genes40
Associated Families33

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfosarcina → Desulfosarcina ovata1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1
Not Available19
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Sedimenticola → Sedimenticola thiotaurini2
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → unclassified Halobacteria → Halobacteria archaeon1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae → Pseudohalioglobus → Pseudohalioglobus sediminis1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylotuvimicrobium → Methylotuvimicrobium buryatense1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Caudoviricetes sp.1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Methylonatrum → Methylonatrum kenyense1
All Organisms → cellular organisms → Archaea1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMicrobial Communities From Sediments And Microbial Mats In Various Locations
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater river biomeriversediment
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationUSA: Delaware
CoordinatesLat. (o)38.7906Long. (o)-75.1638Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004052Metagenome / Metatranscriptome455Y
F004493Metagenome436Y
F005815Metagenome / Metatranscriptome389Y
F005819Metagenome / Metatranscriptome389Y
F009521Metagenome / Metatranscriptome316Y
F010065Metagenome309Y
F011939Metagenome / Metatranscriptome285Y
F018289Metagenome236Y
F026012Metagenome / Metatranscriptome199Y
F029111Metagenome / Metatranscriptome189Y
F039145Metagenome / Metatranscriptome164Y
F039151Metagenome / Metatranscriptome164N
F040603Metagenome / Metatranscriptome161N
F041592Metagenome / Metatranscriptome159Y
F045104Metagenome / Metatranscriptome153Y
F051933Metagenome / Metatranscriptome143Y
F058634Metagenome / Metatranscriptome134Y
F062772Metagenome130Y
F063710Metagenome129Y
F065810Metagenome / Metatranscriptome127Y
F070125Metagenome / Metatranscriptome123N
F070135Metagenome123Y
F073262Metagenome120Y
F074892Metagenome / Metatranscriptome119Y
F076890Metagenome / Metatranscriptome117N
F081352Metagenome / Metatranscriptome114Y
F085725Metagenome111Y
F086821Metagenome / Metatranscriptome110Y
F087134Metagenome110N
F088283Metagenome / Metatranscriptome109Y
F090406Metagenome108N
F103273Metagenome / Metatranscriptome101Y
F103280Metagenome101Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0194019_1003291All Organisms → cellular organisms → Bacteria1590Open in IMG/M
Ga0194019_1004348All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfosarcina → Desulfosarcina ovata1431Open in IMG/M
Ga0194019_1009784All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales1061Open in IMG/M
Ga0194019_1013050All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium955Open in IMG/M
Ga0194019_1013428Not Available945Open in IMG/M
Ga0194019_1013435All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Sedimenticola → Sedimenticola thiotaurini944Open in IMG/M
Ga0194019_1014257All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → unclassified Halobacteria → Halobacteria archaeon924Open in IMG/M
Ga0194019_1014643Not Available916Open in IMG/M
Ga0194019_1016749All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Sedimenticola → Sedimenticola thiotaurini871Open in IMG/M
Ga0194019_1020134All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana814Open in IMG/M
Ga0194019_1025203All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria748Open in IMG/M
Ga0194019_1030922Not Available693Open in IMG/M
Ga0194019_1031467All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae → Pseudohalioglobus → Pseudohalioglobus sediminis688Open in IMG/M
Ga0194019_1032911All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta677Open in IMG/M
Ga0194019_1033078All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylotuvimicrobium → Methylotuvimicrobium buryatense675Open in IMG/M
Ga0194019_1033345Not Available673Open in IMG/M
Ga0194019_1035066Not Available661Open in IMG/M
Ga0194019_1036069Not Available654Open in IMG/M
Ga0194019_1036181Not Available654Open in IMG/M
Ga0194019_1038564Not Available638Open in IMG/M
Ga0194019_1041666All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria620Open in IMG/M
Ga0194019_1042933Not Available614Open in IMG/M
Ga0194019_1045319Not Available602Open in IMG/M
Ga0194019_1047030Not Available594Open in IMG/M
Ga0194019_1047106All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria593Open in IMG/M
Ga0194019_1048152Not Available589Open in IMG/M
Ga0194019_1050418All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Caudoviricetes sp.579Open in IMG/M
Ga0194019_1055052All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria561Open in IMG/M
Ga0194019_1058275Not Available550Open in IMG/M
Ga0194019_1059753All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium545Open in IMG/M
Ga0194019_1061889All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Methylonatrum → Methylonatrum kenyense538Open in IMG/M
Ga0194019_1063188Not Available535Open in IMG/M
Ga0194019_1065094Not Available529Open in IMG/M
Ga0194019_1067072All Organisms → cellular organisms → Archaea524Open in IMG/M
Ga0194019_1071169Not Available513Open in IMG/M
Ga0194019_1071297Not Available512Open in IMG/M
Ga0194019_1074184Not Available505Open in IMG/M
Ga0194019_1076129Not Available501Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0194019_1003291Ga0194019_10032911F074892SSCAERGENVYKSWVGPDRPNMAIVTLRLGDDVRDITVRERVLPRSEYGTLLLVPGQYTLYEDDGANIGITIRPVMMNTEKARASGELILGHTYILHAGKSKDGGERALWIEDARSGEVFIDTR
Ga0194019_1004348Ga0194019_10043483F045104MAEYAPGPRPAPLRNAPPWCGLWSGPRRSAAVLFDPVIHRQLVLSLANTEQARATLLDWLAEQSAHLVIPDTLLAQPGLHHPNQIPVAVWIAPSALLEAIRFTTGLTTRAPKHTAALLARWPTAPALRPFLRRLTASRHPEQLSLL
Ga0194019_1006971Ga0194019_10069712F076890MIGTRSVAAMLVAMGALGTSACSTLEVDDYCRYSETRSIRTADPESLALVLGVQAGRARQTPFVVIRSLSESAPGTSITLYTTPAAHPMPMGLDESRCARVDWSTYTLAVDPEEWNAFWQDDRNSPFEIGIAFVEDFHPLPLSAFGAVILDTGSADYLVSCGCFWR
Ga0194019_1009784Ga0194019_10097842F088283MKTRALILLTSLGVFSGCATGSDVTGSYSPSCVAFEGNTIELSENRFTWDKFTDEVTVDDTGNEVDPFPGFPVRGVYAIEDDVVSLTTDVGELAAELYIVRRPGQVYLLTESEFEAWQKDSTVPDCALLLESGE
Ga0194019_1010497Ga0194019_10104973F026012ERDFLLQALYSIVISLQNNLSINFFDMWVYEIYINKVSTHNKFMSQKSQNLEPGEYITIKLAYGSSVSQEKK
Ga0194019_1013050Ga0194019_10130501F074892MRTLYTAIALPGLLLLSACAEKGDGVYRSWVGPDKPNMAIVTLQLGEDVRDVTIRERTLARSDYGTILLLPGHYMLQEQDDTSIAITVSPVLVSLERARANGELILGHTYTLQAGKSKES
Ga0194019_1013428Ga0194019_10134282F063710MKKPRQRSLRVRVDYEPNRFSGDCLERIYEQLHPTKSREVTPDKNNKQGEVEPQKGKGGR
Ga0194019_1013435Ga0194019_10134351F062772LGGAYGWEPIGTLFLQDGHVEGCGRNHYTLGTYEAKGDGAVFHIELNQFGKKRTLFGQKSEQVSVVVKAKWDHEKLIGEATLPGHRQYGIFVRFKRRADLP
Ga0194019_1014257Ga0194019_10142572F010065VRGESGISFTGLYICGVISLVMLVLKLSVMDAWSWWRVMLPVGLIVGFTVTNMVVAFIYLSFAHIPERPDGDEAELLEPHTINVHYVAAMLFFVVFGDNVVRWIDGSEASYWFWLMSGKVEVLAAFGALSVLALFAYWLRLGRVLKTSN
Ga0194019_1014643Ga0194019_10146432F085725MNLLFATALLLISAVAVGFYLFFLGLRLRKRSPGLGFTHAGLALCGIIVLFTEIFTGPTDKLNNVAALFLFFAIVGGGMVFALHEENRPPSMTAVTVHAIMGLFGISLLIINLF
Ga0194019_1016749Ga0194019_10167492F062772MNLNGVWSSELGGAYGWEPIGTFFLKDGHLTGGGRNHFSVGTYKTKGDSAVFHIVINQFGKKRALFGQKSEQVRVVVKGKRNDDKIIGEATLPGHVEYGICVRFQRRADLPEEKTH
Ga0194019_1020134Ga0194019_10201341F086821MRTSNIDMADTVTPQDVDNFLVNAAWAVRSTYHTVLRSTPGAAIFGRDMLFDIPYLADWKAIGQRRQDLVDQNTAKENTRRIDFDYAVGQRIIVRKDGILRKAEDRYSGPYVITQVHTNGTVRIQRGTMSERINIRRIAPFFE
Ga0194019_1025203Ga0194019_10252031F011939MDDKLIEETLRKEVQKIDKSVKVLAVEQRKKKDFYQVTLLKDGKSGSAELKKDIIKKYLSQEGKGKGLRRALGKAVSHLSIRYNR
Ga0194019_1030922Ga0194019_10309222F004052MRILTLIVQLALTAFIVSCDQQHSAADIDPMLGVECFESHRTSFPPGTQYEGIEKLADKTLTIRIMNGVDVVTLDCRLNPDGTLQGAGK
Ga0194019_1031467Ga0194019_10314671F090406MKGERKTFWLIIALVGLASCSTTLTSVDKEGGNVYALPPTVVDQMLKDAMSTEISTGTLRRGSTPYPSYLGEVTWGSLDKDTITASARPAKGRKLDGTIIDGYVFEVSRKGTAPATGEPTVKRIFVKLQKDAELTGTGAAFVEFA
Ga0194019_1032911Ga0194019_10329111F065810KYIYYAIDDILYLLNSNPIERDNLLFILYSPMLLLQNNFYINFFDIWIQEVYIKETSKPNKFLSQDCKNLKIVNCIIIKLLYKKSSPIQKVDSLW
Ga0194019_1033078Ga0194019_10330781F103280RKIKNLIGFITIGLIWLLPVSLPEIQAQQTAAPPSTAAVSSALTIENLKSRRLAIENKTDIDAAVKNDSLKYVDQAIAYLEEATSTNTNARELAKLIQTAPERLKKLQAELKKSFTASEKVEERARQMRTIKLE
Ga0194019_1033345Ga0194019_10333451F039145VAKFYNLPECGKHKKEMKNFLINVLLALILLSGCSQEGVKAPFELSAFIEELKANGVDGTLILRAPINEDMEYVAEYTIAKYSSTRIISLFKCKDAEKAEANLQEALKNHKLSGQASNGTFIMAATFYPPDEEAVEKIKAIFLAYEFEQ
Ga0194019_1035066Ga0194019_10350662F085725PYSLSSVITISMNLLPLLFLFLISAVGIGIYLVFLGLHQRKRSPGLGLTHAGLALSGFIVLFIEIYSGPIDKLNNIAALLLFFAILGGGMVFALNEEGRPPSMAAVIAHATMGLAGISLLIINLFLS
Ga0194019_1036069Ga0194019_10360692F009521MKYQILINNGSLKGFIAFKGSCLATMQDKYKRLEQQGHKLKLIRGE
Ga0194019_1036181Ga0194019_10361811F103273PFMSDTRIGAILRSAWKILRLDAIRPVVRQTIADLEALTAAQVVGREPSRYEIEVERGSLRAALDACCDELREGCGLPTSPGLSAQVQKMHAADPDWTESFSNALEAYRSAACKELDVSLASLALPPESSSALETP
Ga0194019_1038564Ga0194019_10385641F073262PATSGTLEMADDPTGHLIGAAWRHANNYLEGLRAPVGIATQLLALQSTANTTDTNLNASLNRPKALATLQDKCPMLVATLLAACKVATATALPLCWSKVHATLKPAEWAAHHARALDTAGSEIDKPAPLIPPPVASDLGNGRFTASSAHNPNEGMSMFCIRPSCMPSRQEHQDRNRTFEVLVQGVGAASFEAQQMVLISHEFELLQSTNEFR
Ga0194019_1041666Ga0194019_10416661F058634RFTGSVLLTCTAMAVAVTGCGSDQSQSAEGIGSVDMTVTLAQPPSGPNEQIDTVDVSLYCDGVDPVLGVPRPPQSSPETFSINVATSQGPEPYNTIGLLEKQGLPAVNCHFSFAAVSNTGNTQCTGELTVAIATNETTQSEVVLACIHTPRYGGVRTDGTFNQCAEYRQILVTPTTQAIGNLVDVRTEVYDPDGDPVTVGVQAVGA
Ga0194019_1042933Ga0194019_10429331F004052MRIFTSIVQLAMTTLLLSCDQRPSAYDVDPRLGRECFESHRASLPPGTQYEGIEKLAENRLTIKIMNGVEVVTLDCGLKPDGSLQSPAK
Ga0194019_1045319Ga0194019_10453192F051933MALIVLTFVSVVCVALLFIERQDLGVLQQNFNTLRQENAMLKSQLDDYRNGLATQQEAAARLSD
Ga0194019_1047030Ga0194019_10470301F081352MLSDELFLMIRLIRKISAIILACLLGFNLTAGAAVVVAPCPTSMSCSDPMDMDHCDGLLNFAFPMQGCCGECNDIFCDLMKNPWKDVNAVNTSPFQGSCYPFFPGTVDPIAESGVWIALPEPRSLFSAAPAW
Ga0194019_1047106Ga0194019_10471061F005815MTMNVTRLTTYWSIDEAATVIEFLDILRDALWETYGEQITEMHRETHDNRFQDIN
Ga0194019_1048152Ga0194019_10481521F004052DLRGLPSMRILTMIVLFSLTALLCACDQRHAASDVDPELGLECFESHRAALPPGSQYEGIEKLAGSRLTIRVMNGVEVVTLACELNPDGTSLSAVE
Ga0194019_1050418Ga0194019_10504182F039151MLHTKHITLTDATEQTLFTIPTGYTIHIVYIFIANHGGSTNQVSLWWETGGVDQMYFFDGTSIGAGNKEILGGQNDKGIFVLHNGDTVKTQASSATGQMEVAVTFELLERPTAFSNFNGS
Ga0194019_1055052Ga0194019_10550521F058634MRYLSALATTVMLASALAGCSSSSDQSESPAGIGNVDMAVTLATPPSGPNEQIDTVDVSFYCEGIDPVLGVPRPAQSSPETFTINTSTSQGPEPYNTIGLFEKQGLPAGPCHFDFFAVSNTGNTECTGELTLVVSTDMTTSFEVV
Ga0194019_1058275Ga0194019_10582751F004493ELGFTDEQWSQLIAGNGLLIMWFVEWNHDKPDMSIMEFFTQKYNQSAGCNPWPIKGGVSLDGKYVSTYSDDEDLEPYFMIDTDDGIGYIYPYAFVALPTKAGGHTIVRMD
Ga0194019_1059753Ga0194019_10597532F040603MWTHEAQLQLCGSTNMMYYTKHKTLADTSETTLFTVPNGYVLWINYVFIANHGGSTNNVSCWWENSAGVDQLYFLDNNSLNSGAK
Ga0194019_1061889Ga0194019_10618891F070135YALNIPLDSKGQFKLQVYADGFAPSIGTFDEFKTTNIVRMARAIECQ
Ga0194019_1063188Ga0194019_10631881F070125QWMEALHAYRDDSERLFGLVASLANLLDRDLVIETMESVLGITAVHDGDCIIFDDLAIRFGSDGRVKSVFRTNDGSGSDGARANPGDSNG
Ga0194019_1065094Ga0194019_10650942F087134MKMIEPKREDILKAWEVMYKLQHDGRRSHADVDKLHEAMRILDAEQN
Ga0194019_1067072Ga0194019_10670722F041592MGRKERCPRCGSKKIKIAANQKECKVCKFTWTGKSGGKTSKKDKVRF
Ga0194019_1071169Ga0194019_10711691F073262TMGANLNASLDRPNALAASQDKCPMLVATLLAACKVTTTAALPLHWSKVHATLKPAEWAAYHARTLDTAGSEIDKPAPLIPPPVALDMGNGRFAASSTHNPNEGMSVFHIRPSCMPSRQEHQDRNRTFEVLVQDVGAASFEAQQMALINNEFELPQSTKEFRGCINGYQVL
Ga0194019_1071297Ga0194019_10712971F005819MDYIDDMSLALPNQQQVGESNIDFKRFQYYLGLGASRSYEKVSNNFTITDRRVKQIAAKNQWQDRIKAINKMLNEQIISEVFAQVGETARDLADNLKPLIFRIINEINERDLASMNPTELKGILDICYKIISQIYGLGQPQVTV
Ga0194019_1074184Ga0194019_10741842F018289MTEFNRSQLNLLRKQLQETIDKANLSDITIDVGNCSYSGGEATFKVKCVLKGAKTREQIDLEYYAEMHGIDTTAIAKLQGEDMSIIGYKSRARKKPWILQRLRDGAEFVCSDHTAKQFFKKREEIADAT
Ga0194019_1076129Ga0194019_10761291F029111TPIGTLGLHSGGGGNRTTGSSSDSDDSRTVSRTSIDENTSKEHEQNALPDILMTMSQIPVPDVTQELADVWALHALFAAAQRNEE

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