NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300019696

3300019696: Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? BRC_3-4_MG



Overview

Basic Information
IMG/M Taxon OID3300019696 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0129088 | Gp0217683 | Ga0194017
Sample NameSediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? BRC_3-4_MG
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size94655029
Sequencing Scaffolds47
Novel Protein Genes51
Associated Families46

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium3
Not Available24
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1
All Organisms → cellular organisms → Eukaryota → Sar2
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon1
All Organisms → cellular organisms → Bacteria → Proteobacteria4
All Organisms → cellular organisms → Bacteria5
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → unclassified Halobacteria → Halobacteria archaeon1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae → Pseudohalioglobus → Pseudohalioglobus sediminis1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMicrobial Communities From Sediments And Microbial Mats In Various Locations
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater river biomeriversediment
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationUSA: Delaware
CoordinatesLat. (o)38.7906Long. (o)-75.1638Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001488Metagenome / Metatranscriptome686Y
F004928Metagenome / Metatranscriptome418Y
F005815Metagenome / Metatranscriptome389Y
F006304Metagenome / Metatranscriptome376Y
F006847Metagenome / Metatranscriptome363N
F010065Metagenome309Y
F010090Metagenome / Metatranscriptome308N
F012457Metagenome280Y
F012678Metagenome / Metatranscriptome278Y
F012917Metagenome / Metatranscriptome276Y
F015742Metagenome / Metatranscriptome252Y
F020880Metagenome221Y
F026445Metagenome / Metatranscriptome198Y
F027160Metagenome / Metatranscriptome195Y
F029111Metagenome / Metatranscriptome189Y
F031522Metagenome / Metatranscriptome182N
F035989Metagenome171Y
F037736Metagenome / Metatranscriptome167Y
F037999Metagenome / Metatranscriptome167Y
F041207Metagenome / Metatranscriptome160Y
F042909Metagenome157Y
F045104Metagenome / Metatranscriptome153Y
F045765Metagenome / Metatranscriptome152N
F047065Metagenome / Metatranscriptome150Y
F050019Metagenome / Metatranscriptome146N
F060828Metagenome132Y
F063710Metagenome129Y
F066277Metagenome127Y
F069741Metagenome / Metatranscriptome123Y
F070125Metagenome / Metatranscriptome123N
F070128Metagenome / Metatranscriptome123Y
F072362Metagenome / Metatranscriptome121Y
F076890Metagenome / Metatranscriptome117N
F077315Metagenome / Metatranscriptome117Y
F080061Metagenome115Y
F082105Metagenome / Metatranscriptome113Y
F084254Metagenome / Metatranscriptome112Y
F085722Metagenome111Y
F087210Metagenome / Metatranscriptome110Y
F088283Metagenome / Metatranscriptome109Y
F088919Metagenome109Y
F090406Metagenome108N
F093888Metagenome / Metatranscriptome106Y
F095003Metagenome105Y
F095489Metagenome105Y
F106150Metagenome / Metatranscriptome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0194017_1000681All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium2176Open in IMG/M
Ga0194017_1001961All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1545Open in IMG/M
Ga0194017_1002139Not Available1502Open in IMG/M
Ga0194017_1002693All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales1396Open in IMG/M
Ga0194017_1002726All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1389Open in IMG/M
Ga0194017_1004180Not Available1201Open in IMG/M
Ga0194017_1004301Not Available1189Open in IMG/M
Ga0194017_1005147All Organisms → cellular organisms → Eukaryota → Sar1117Open in IMG/M
Ga0194017_1007639All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium982Open in IMG/M
Ga0194017_1008091All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon963Open in IMG/M
Ga0194017_1009627Not Available907Open in IMG/M
Ga0194017_1009831All Organisms → cellular organisms → Bacteria → Proteobacteria900Open in IMG/M
Ga0194017_1010225All Organisms → cellular organisms → Bacteria → Proteobacteria889Open in IMG/M
Ga0194017_1013024Not Available818Open in IMG/M
Ga0194017_1013794Not Available803Open in IMG/M
Ga0194017_1014452All Organisms → cellular organisms → Bacteria790Open in IMG/M
Ga0194017_1015282All Organisms → cellular organisms → Bacteria774Open in IMG/M
Ga0194017_1016615Not Available753Open in IMG/M
Ga0194017_1017420All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium740Open in IMG/M
Ga0194017_1018846Not Available719Open in IMG/M
Ga0194017_1019982All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage704Open in IMG/M
Ga0194017_1020668All Organisms → cellular organisms → Bacteria → Proteobacteria696Open in IMG/M
Ga0194017_1021268Not Available689Open in IMG/M
Ga0194017_1022013All Organisms → cellular organisms → Bacteria → Proteobacteria681Open in IMG/M
Ga0194017_1022328Not Available678Open in IMG/M
Ga0194017_1023503All Organisms → cellular organisms → Bacteria666Open in IMG/M
Ga0194017_1023622All Organisms → cellular organisms → Bacteria665Open in IMG/M
Ga0194017_1024531Not Available656Open in IMG/M
Ga0194017_1027277Not Available634Open in IMG/M
Ga0194017_1028610All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote624Open in IMG/M
Ga0194017_1029426Not Available618Open in IMG/M
Ga0194017_1032040All Organisms → cellular organisms → Eukaryota → Sar600Open in IMG/M
Ga0194017_1032630All Organisms → cellular organisms → Bacteria597Open in IMG/M
Ga0194017_1033221All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → unclassified Halobacteria → Halobacteria archaeon593Open in IMG/M
Ga0194017_1034042All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae → Pseudohalioglobus → Pseudohalioglobus sediminis588Open in IMG/M
Ga0194017_1035894All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium578Open in IMG/M
Ga0194017_1039854Not Available558Open in IMG/M
Ga0194017_1040562Not Available555Open in IMG/M
Ga0194017_1045807Not Available533Open in IMG/M
Ga0194017_1046127Not Available532Open in IMG/M
Ga0194017_1046436Not Available531Open in IMG/M
Ga0194017_1047864Not Available526Open in IMG/M
Ga0194017_1048788Not Available523Open in IMG/M
Ga0194017_1049645Not Available520Open in IMG/M
Ga0194017_1053874Not Available507Open in IMG/M
Ga0194017_1054846Not Available504Open in IMG/M
Ga0194017_1056326Not Available500Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0194017_1000056Ga0194017_10000563F076890MVVNRTVTTLLMAALGPGLSACSTPGFEEYCRYSDEYSIREADPQSLALVLGVRRGLAMETPFVVVRSLSEHNRGAALKLHATAEPHPMPVSLDESRCAAVDWNTYTLTVDEEEWSAFWSDDRNAPFEIAIAFLDNNESLLVSKFGAAIVDTAASDYLVSCGCYWK
Ga0194017_1000631Ga0194017_10006313F087210MRFLIAALAFAGAETALAHTPDTGFLSNFGHQLTSLHHSPAAMLLGVVVLVLMLVAVRKLTTR
Ga0194017_1000681Ga0194017_10006811F004928MSQALHSIESEPNHTVEIVVHITETLGEQQRGDLVAALEGNAGIATAEFCPLRYHLMLVRYDRDLYSSQDVLERVTSHDVSARLIGPV
Ga0194017_1001961Ga0194017_10019613F082105MVVLIWRDPPRCAGQPNATVQPAVAGTVMPIDSVGSGRVNEKK
Ga0194017_1002139Ga0194017_10021393F005815MTMNVTRLTTYWTIDEAATAIDFLDRLRDALWETYGEQIIKMHREADDTRFRDINQGELGFDDDIPF
Ga0194017_1002693Ga0194017_10026931F088283MKTRALILLTSLGVFSGCATGSDVTGSYSPSCVAFEGNTIELSENRFTWDKFTDEVTVDDTGNEVDPFPGFPVRGVYAIEDDVVSLTTDVGELAAELYIVRRPGQVYLLTESEFEAWQKDSTVPDCALLLGSGE
Ga0194017_1002726Ga0194017_10027261F026445VNIDQAKPKRQKRTITLYLGNTLGEYEATYLTETGLKALIRRVETADSINWGCLATGHEAGCPRQLHFTHHDSYSRWVKHFNGTQSVVVIHRVRCLDCGAVFSVQPSFLIRYKRYDTDATEKLMTLLFITEDSYRMAGVSQTLALDDQQAGTWAALEIHQAHAIQPLALWRLVQWLGQLSPAQLNLALGVEPPQIIIEDEKHATECGQKSYIPLVYAPKEALIWWVDYLHSVSEADLTASLERFKAISDRLVDIIGATVDGWEAAQNALQATFEGITLVECHFHALLKLGQHLATYKRQRKQAGQPLSETEEIAIRAAFWRVLKATTPEQYQQALDQLPEAFEQEPLASRKQSLIEKQALFLAWTTDQRLAVVTTALDQCMKFLDRKLENMQTFHSKQ
Ga0194017_1004180Ga0194017_10041802F012457MMIKDLEKSKDLDRDALSAVRGGRDSIEQGGVYAPVANINNGFSFASPTTIVSTPVNAPSAVFNDNDLHLKLANKTANVLGSLGTAILQ
Ga0194017_1004301Ga0194017_10043011F037736VPCRVQLDGLQILWLLANPLWTHGIGESGSKTITGWLLMDAAAANHIWWLNTNPFTGLLLHINSYRIRHLPFGFLTASEFQSRSTCLIKK
Ga0194017_1005147Ga0194017_10051473F001488LFLQEHLNHTLRLIKKQNVKEKLNMARLELTLNFPKSFEIKTFSVKSEKKLSPLAKLILQSVQFKHFYYVRDDISYLLKSNPIERDFLLQALYSIVISLQNNLSINFFDMWVYEVYINKVSTHNKFMSQKSQNLEPSEYITIKLAYGNNVSQEKK
Ga0194017_1007639Ga0194017_10076393F041207MTHKATQQEELERIDTMTILEAVAYANRLSKRLSSYECTDEEKTNALELLGRLTARVRFLKITLEPVYSRAI
Ga0194017_1008091Ga0194017_10080912F060828MDNNNMNKFNGHEAYIISTAVDDYVKKMNKAIKQAEAEGKRPIFTVDYFPQLAKDINSKLNLNTIKDYGDME
Ga0194017_1009627Ga0194017_10096272F012457MMIKDLEMNKDLDRDALSAVRGGRNSIEQGGVYAPVANASGGFSFGSPTTIVSAPVNAPVAVLSDNDLNLKLANKTSNVLGSLGTAIWQ
Ga0194017_1009831Ga0194017_10098312F095489MVTNEATPVSKTRMNTPANDVVGWNVVAERRFEDIEELNDLVQGWNFEFHQLKAGRSPAELLQLGRPEFMLSRFYFEQ
Ga0194017_1010225Ga0194017_10102252F010065VRGESGINFTGLYICGAIAFVMLVLKLSVIDTWSWWRVLLPIGLFFGFTVTHILVALIYLSFAHIPERPGRDEDEILEPHTINAHYIAAMLFFVVFGDNMVRWIEGSETSHWFWLFSGKGEVLTIFGSLSALALFAYWFRIGWVLKALG
Ga0194017_1013024Ga0194017_10130241F080061KRQLFGILNFSHCDSPFDLAQGGGELVEPFGNCDLLFEVLYY
Ga0194017_1013794Ga0194017_10137943F020880LDKLCSMMDNIFKFMIGLKMNYYFTGLLIVMLVLLAFCGGPSV
Ga0194017_1014452Ga0194017_10144521F006847MGELLMLFITGGGSTAMGAILKGVFGYIFEAKQNKHDLEMAREARASDNFLRLQAEIAKGGTGEFVSFTRRILAVIGVSTLCACIILCTIFPSAEIVTLTNADGEGVNEFFFGLISFQANQEPISISSGHISLMGCTVILPCILGFYFGPSGRRG
Ga0194017_1015282Ga0194017_10152821F012917MILLKFLRFPLNDCGYYDKYSSFGEINQVWDKKKHLRRKRWSQE
Ga0194017_1016615Ga0194017_10166151F045104AKYAPGPRPAPLRNAPPWCGLWSGPRRSAAVLFDPVIHRQLVLSLANTEQARATLLDWLAEQSAHLVIPDTLLAQPGLHHPNQIPVAVWIAPSALLEAIRFTTGLTTRAPKHTAALLARWPTAPALRPFLRRLTASRHPEQLSLL
Ga0194017_1017420Ga0194017_10174201F045765DLLRKFCDKEGRRLKDFVEDALENAIYTEESIKILNEEINTLKKKEAKYDYAFRRGFQKGFYISFCALHGQILLEPDDEAFEILKNDPYRISKGAQLDLFRSKEI
Ga0194017_1018846Ga0194017_10188462F095003MGNGIGWFLAGLLSGAGIGWYAGILRERIRQTDPKKSKRESNFYRHLMGKAGLPVDGDKG
Ga0194017_1019982Ga0194017_10199823F006304MATTKKKLTPAQKYSQLIRQTENAGMKVVEKDGKIVVTRKKKK
Ga0194017_1020668Ga0194017_10206682F072362MHKLFAIGIAIYLAGDPTLSMLASFSESRELIVASALAFIAVPWVVSQIDN
Ga0194017_1021268Ga0194017_10212681F095003MDYGIGMFLAGLLSGAGIGWYSGILRERIRQTDPKKSKRESNFYRQLLEKAGLSVDGDKA
Ga0194017_1022013Ga0194017_10220132F005815MTMKVTRLTTYWTIDEAATAIEFLDILRDALWETYGEQITEMHREAYDNRFQDINQCELGFDDDLPF
Ga0194017_1022328Ga0194017_10223281F077315MLICKASTLFLSRFACWKVWALLLLLVLLVPAQAEEAPKPDVLPQAQATLERLEKQFAPARTATAQELKSLKKEIDTVRSSAQDCVKRAEPKIEILDSELAIFQPAKSKDTQKKTAGETQPAEQPEAPVSSAIARQLQDLQSRKASLEGRIA
Ga0194017_1023503Ga0194017_10235031F035989MRGRGQRHAMTPEDIHHFRTVGQGVLPSTDYFSGFAEVRGAHYRRGYDYELLYILAAEVIEAVNRASWN
Ga0194017_1023622Ga0194017_10236222F070125VTTAEQRRQWIEALHAYRDDSERLFGLVASLANLLDRTLVVETMESVLGITAVHDGDCVIFDDLAIRFGSDD
Ga0194017_1024531Ga0194017_10245312F093888FAFVVTSSLALFGILILIKVRSIKKGLNDLNDRLDIISQGLGWQSAEFENIQPYKFKLGSHINDELAADGRTNSEINTTADSANKKGSEEHRINMEISKKIHALLKKSGKPTPYHDLTKHLSKDYPKYNYDFFLKEMEDLQKEGKVEVQLIAGKLYFQIKKT
Ga0194017_1027277Ga0194017_10272771F106150VHKNTDELHKEISELKDTLEGFKKLIEVQRREIFDLKKYVSEDIKNKNLLQGYRKVIEDISSQVRK
Ga0194017_1028610Ga0194017_10286102F070128VPIRKIGMTIAVVMLLIGGFGSLAAGELDATAIMALSLASSLILLDLAGKPAPRSVRAIVGFALLATAVGAALVMVYEILSR
Ga0194017_1029426Ga0194017_10294262F050019LGIADNIRGFFSSQEVNTEKKTYNNFPTSNIVFPFNADAGYFSGVNQMSPEGNSAALACLNVLGTAFSEPPLKVYLKTQEGDEYIANHPA
Ga0194017_1032040Ga0194017_10320401F012678MRNQHSLEEIAEIYRLLEDIKGEYEEGIRAVLKKNAPTLFSNPHMIPKLQKI
Ga0194017_1032630Ga0194017_10326301F029111LKFHSGGNRTAGSSPDPDESPTVSRTGIDENTSKEPEENALVDILMTMSQIPDVNRELAEVGAMFAVFDVLRRNRRR
Ga0194017_1033221Ga0194017_10332212F069741MLENIFFDVDQLTRLSRTEQAQRLEEAERQIDDVQRAAANDPDSLSWIDQQRQYLVDMQHLIFEC
Ga0194017_1034042Ga0194017_10340422F090406MKCERNILWWIIVLVGLASCSTTLTSVDEKGGNVYALPPTVADQMLKDAMSTEISTGTLRRGSTPYPSYLGEVTWGSLDKDTITASARPAKGRKLDGTIIDGYVFEVSRKGTAPATGEPTVKRIFVKLQKDAELTGTG
Ga0194017_1035894Ga0194017_10358942F027160MPVLSGGSKFVTHATALANTSDTDVYVVPKNFSSHVEHLMIANNDSSNRNYTLKYYEKASNTTHTLVTSHAVSGASIESVFTVDKPLYINAEDKIIVAATTGNTLTVVVAAEEFYDPNV
Ga0194017_1037516Ga0194017_10375161F037999FNEMPRAEQVKLIIKNPAELIDYVRRESHVVWKAVEAFIRRENDEGRDALIEGVAVLPELVSQLEDIPHRVVFIGNQGENHKENIKKSAEENEHDWMRGVSDQYIGTFAKFVQRMSAYVELEAKKYGFEYIEMDKELFGDVTEEVMKSLGLSVR
Ga0194017_1039854Ga0194017_10398542F042909MVELLNFIGSLNLWTFIVIWTSTIFLVISISVLLFSVSQMNKETIKISQKVKILMEGLSEKKINA
Ga0194017_1040562Ga0194017_10405621F069741IIFDVDQLSQLSRTEQAQRLEEAERRIDDIQRAAADDPASLSWIDQQRQYLVDMQHLIFE
Ga0194017_1041059Ga0194017_10410591F088919LFELIQNAMYLEEICLSTAEDEPEVDQPLEALDKVAVLEQTNWMRRCRLEFTLFNNYHLSVKTLGFMQDARDYTVDIRVLDPHPKRILKVAWSYFLIFFALCGAAWFLASSGFALNTTLLSISLIVFAGVSLIPAVYRSHDRMVFYSQHGRTPLVVLFNRSPDQVTLDSFIDAL
Ga0194017_1045807Ga0194017_10458071F012457MMIKDLEMSKDLDRDALSAVRGGRNSIEQGGVYAPVANAGGGFSFGSPTTIVSAPVNAPSAVLNDNDLHLKLANKSTSVLGSLGTVVWQ
Ga0194017_1046127Ga0194017_10461271F031522MTKANKKAPNVFSRKQEQLIINSCELLDNKSQLTSDWTRIIKPELILLFDQHSTKSVNQNLVGLSLIKKGTFYQIAKDTSEYNMFDSKNFQKQYPELFRKFSRKNVRTNWTYSI
Ga0194017_1046436Ga0194017_10464362F066277MNRKKFFALFSTSILGAALLSFNPLNLFKARNASGKSVKVKINPNAVSREKSG
Ga0194017_1047864Ga0194017_10478642F084254FISKSIVIEIMAEVIRQSKRYPRADQVASALAKRGVPIAEKDVMIVFDQYDIEKKTADSH
Ga0194017_1048788Ga0194017_10487882F085722MARKEILGICFFLLVIAQAGCSNPHKEASRASTASSKAEAEVHSEKAKILEDYRKCLNKNKSDESACASYKKALDSM
Ga0194017_1049645Ga0194017_10496452F010090MEFKFIQRINEGSNGAFQTKQFLDVRGGQTTVIFNAINVIPQKSDIYVSGKGSSTSSASASFDLLLVQDGY
Ga0194017_1053874Ga0194017_10538742F015742MDSKKAYEQIKEDIVDRESAYLCTELERALDRIINYTDPLDETMFRDIKASAIKLLKEWH
Ga0194017_1054846Ga0194017_10548462F063710MNKPRQRSLRVRVEHEPNRFSDDCLERIYEQLHPTKSREVTPDKDNKPGEVEPQKGKGGQ
Ga0194017_1056326Ga0194017_10563262F047065MTDLLNKFSKAAKAVSSSKTLMWECVKQAYADHLSDLSRDDLPEEIQIFYDSVKLRVTSVEPPGYIGNDEAIYIANDIMYLADVINSGLRKS

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