3300019167: Spruce litter microbial communities from Bohemian Forest, Czech Republic ? CLU1 metaT (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300019167
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128948 | Gp0211294 | Ga0184571
• Sample Name: Spruce litter microbial communities from Bohemian Forest, Czech Republic ? CLU1 metaT (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 6693659
• Sequencing Scaffolds: 48
• Novel Protein Genes: 49
• Associated Families: 42

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	47
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Polyporales → Fibroporiaceae → Fibroporia → Fibroporia radiculosa	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): forest biome → litter layer → plant litter
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Czech Republic: South Bohemian Region
• Coordinates
  • Lat. (^o): 49.043
  • Long. (^o): 13.6183
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001024	Metagenome / Metatranscriptome	803	Y
F001380	Metagenome / Metatranscriptome	709	Y
F001418	Metagenome / Metatranscriptome	698	Y
F003050	Metagenome / Metatranscriptome	510	Y
F003269	Metagenome / Metatranscriptome	496	Y
F004183	Metagenome / Metatranscriptome	449	Y
F007847	Metagenome / Metatranscriptome	343	Y
F009017	Metagenome / Metatranscriptome	324	Y
F009043	Metagenome / Metatranscriptome	324	Y
F009606	Metagenome / Metatranscriptome	315	Y
F010305	Metagenome / Metatranscriptome	305	Y
F011395	Metagenome / Metatranscriptome	291	Y
F016972	Metagenome / Metatranscriptome	243	Y
F018722	Metagenome / Metatranscriptome	233	Y
F018933	Metagenome / Metatranscriptome	232	N
F023505	Metagenome / Metatranscriptome	209	Y
F024793	Metagenome / Metatranscriptome	204	Y
F024939	Metagenome / Metatranscriptome	203	N
F025423	Metagenome / Metatranscriptome	201	Y
F025750	Metagenome / Metatranscriptome	200	Y
F028056	Metagenome / Metatranscriptome	192	Y
F030305	Metagenome / Metatranscriptome	185	N
F030627	Metagenome / Metatranscriptome	184	Y
F031323	Metagenome / Metatranscriptome	182	Y
F040634	Metagenome / Metatranscriptome	161	N
F045560	Metagenome / Metatranscriptome	152	Y
F048323	Metagenome / Metatranscriptome	148	Y
F057386	Metagenome / Metatranscriptome	136	Y
F058155	Metagenome / Metatranscriptome	135	Y
F058585	Metagenome / Metatranscriptome	134	N
F059538	Metagenome / Metatranscriptome	133	N
F060153	Metagenome / Metatranscriptome	133	Y
F060406	Metagenome / Metatranscriptome	133	N
F062325	Metagenome / Metatranscriptome	130	Y
F062326	Metagenome / Metatranscriptome	130	Y
F062493	Metagenome / Metatranscriptome	130	Y
F065812	Metagenome / Metatranscriptome	127	Y
F067292	Metagenome / Metatranscriptome	125	N
F072836	Metagenome / Metatranscriptome	121	Y
F074242	Metagenome / Metatranscriptome	119	N
F080063	Metagenome / Metatranscriptome	115	N
F089618	Metagenome / Metatranscriptome	108	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0184571_100237	Not Available	533
Ga0184571_100331	Not Available	567
Ga0184571_101431	Not Available	611
Ga0184571_101442	Not Available	801
Ga0184571_101651	Not Available	541
Ga0184571_102233	Not Available	686
Ga0184571_102454	Not Available	505
Ga0184571_102857	Not Available	577
Ga0184571_103189	Not Available	679
Ga0184571_103359	Not Available	586
Ga0184571_103659	Not Available	515
Ga0184571_103768	Not Available	511
Ga0184571_104138	Not Available	797
Ga0184571_104146	Not Available	735
Ga0184571_104175	Not Available	890
Ga0184571_104188	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Polyporales → Fibroporiaceae → Fibroporia → Fibroporia radiculosa	602
Ga0184571_104425	Not Available	585
Ga0184571_104434	Not Available	521
Ga0184571_104499	Not Available	804
Ga0184571_104557	Not Available	806
Ga0184571_104602	Not Available	652
Ga0184571_105128	Not Available	595
Ga0184571_105354	Not Available	803
Ga0184571_105385	Not Available	514
Ga0184571_105497	Not Available	689
Ga0184571_105564	Not Available	901
Ga0184571_105598	Not Available	522
Ga0184571_105685	Not Available	546
Ga0184571_105974	Not Available	711
Ga0184571_106225	Not Available	606
Ga0184571_107995	Not Available	589
Ga0184571_108375	Not Available	567
Ga0184571_108412	Not Available	568
Ga0184571_109503	Not Available	538
Ga0184571_109636	Not Available	522
Ga0184571_109948	Not Available	742
Ga0184571_110111	Not Available	803
Ga0184571_110694	Not Available	567
Ga0184571_110767	Not Available	792
Ga0184571_111726	Not Available	586
Ga0184571_111746	Not Available	724
Ga0184571_112151	Not Available	846
Ga0184571_112153	Not Available	514
Ga0184571_112300	Not Available	749
Ga0184571_112675	Not Available	751
Ga0184571_113531	Not Available	565
Ga0184571_114323	Not Available	507
Ga0184571_114940	Not Available	559

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0184571_100237	Ga0184571_1002371	F030627	AVSDRFCGDLLPARARLGPLSVRHFLRIASGRRFCCGSFRRSNHPTGWHGGFPAGRPWDFAAERRKIAPTDKGWRSLPALPFPGPAPRIGLASSAVTGSIDLPWVQCTGVEGLSPRDPGASLAATLTPIAHPAFWRRLVRGGLVAGRRLPPCPRLIASHGLL
Ga0184571_100331	Ga0184571_1003311	F028056	PGFTARLSEPPACSAFDPQPNTPDSTFAARRRRFSARAGSVQQTFPQRTCIRPEPETRNGLSLARNDAFATITRSTFLACPFDSTYKLCADPFHRKLSARFGFEAETGRIHHLRPVIHAPLMRSHDATPSPLPFGLSLPSGSKRSTGFITGSSPYRTPDLPFTPRCAFFRLRFGSVLKTPLRPVWLSF
Ga0184571_101431	Ga0184571_1014311	F025750	MAKADAHRSINPLPAKTGSGERRAHVTPSPDAEFRPCMPVGERAG
Ga0184571_101442	Ga0184571_1014421	F067292	ESVVQPLLRPLATPAADPQLALATASTGCAGFKPPTCVGCSTSGSTGGQPSGSDRCSVLRLDRWQAPGFHRLLCASVRPGADLPACAGVHPPARPATNCRLTPGADSSARLVPNFRLSPVVVAAFGLRLLLLRLLQLALGVARLPHRRRTSDSHRLLRRPASPVSTHSTCVGCFYFRLGLRCTPCFDWTLHRRTSRR
Ga0184571_101651	Ga0184571_1016511	F062325	SDPISSLAHHGHATVLSIAFQIAVRPACLLPGNRFGDYRFNAFRRAAALYPKLNRSLVTAFPSPVTAPAFADSIPGSMVPACYFAVSLTG
Ga0184571_102233	Ga0184571_1022332	F018933	RSRITPRSTLDSLYRPRIAPRSVLIDRCCPPIARRSTLNAPRRSQIAPRSTLCARAGHGLLRVQHLESSPRVQIAPYSTLCVPRRSQIAPRSTLPAPYRLRIAPLSAIDAPCRSTDISVRLHFAPCAVHGLLRAQHVKLRTAHRLLCVRRLHFVPITDCSAFLTPCLVLLADCSVLNT
Ga0184571_102454	Ga0184571_1024541	F057386	RRQSRVKSRLSVSWIIPGDWGKAGSGWLTGLLINRSASFGEAEFTSSSNGVRTPLNANEGLGGEE
Ga0184571_102454	Ga0184571_1024542	F058155	SRLFTLKLPFIHSPAVSFLTSPALGSFSRGLPGLRGLPGLDSHFVPPFSVFLLADHTF
Ga0184571_102857	Ga0184571_1028571	F040634	MHGTEHRISDCRAYSPQAPRLLAYPASASSPLDAPQLIFPKRDRSLAAAFPSPRTPSACADSTLRSMVLACYFAHSLAVRPARSAFWLRRQGLVGPSFRLHPRLKPVAFCTGPLCRLCRHVPLPFRSFRSLRINALPGFATVRSAFRNCPIFVRSPQPFLLKFGCGS
Ga0184571_103189	Ga0184571_1031891	F074242	VLGGGGGRSALQPPPFVPTMGLSHKFRFTCGGQSGTFSITRGKLLNLVVLATSTTATVRLFEAVRLKNVEVWANPSSLGSAPVTAAIEWLGENSPSTVISDTSMGVRPAHVSSVPPPSASNRWWCISGTSESDVMFSLTVPTESVIDVTLELRLVEQEAPTAGEAAVAATAGQVY
Ga0184571_103359	Ga0184571_1033591	F062325	PSDPISSLAHHGHASVLSIAFQIAVRLACLLPGNRFGGYRFNAFRRAAAFYPKRNRSLVTAFPSPATASAFTDSIPGSMVPACYFAVSLAD
Ga0184571_103659	Ga0184571_1036591	F018722	MLPATAVARMEGRTAPAAVALSPVARDYPSRALGGFFRPPRCD
Ga0184571_103768	Ga0184571_1037681	F025423	SDPISSLAHHGHASALSTAFRSAVRLACLLPGNRFGGYRFNAFRRAAAYLSETGPLARNGLSLARNGSRFRGLHSGVKGPGLLLRYLARRFLCPFGLSAPLPELVRPNSRRFLASDPLHFRRLTHPAALPISTPLREFLLPRDQSVQWASLPSGPPSESARFPLAPRSLF
Ga0184571_104138	Ga0184571_1041381	F024939	SRVAGPRTFRCAPVADYSSLDTWLSPLPADCSAFRVVHPMLPTDLTRRSTLDARRRSRIAPLPAICVRVAHRIAPCSTLRALHRSRIAPLSMLVRRASCELLRSPRFAPCRLYRISPPGLLRSDCSSFGDLMLRDGLRIAPYADTSHPCVDHGSLRVQHFKLRPVHRLLCARRLAFDSDRGLLRCLHLAPWCCPRIAPCATLGVLRLTRLAPHSTLIAPHQIWITPYPTLDTLLRLRIAPHSSLSAPC
Ga0184571_104146	Ga0184571_1041461	F007847	LKRAEKPHSKFSDRKALDGPATRPETPLAVENGVGNPAAP
Ga0184571_104175	Ga0184571_1041751	F030305	MPLQFIGSCIVPFGFLVPVPSFLFPALSDLARRCSSGRPVPRVSDRTGDEASSCPDSSVFSAVPADGSSSRPDSRILQLGYPQIARLPRLSTSCLAVDERPGCPDRSIIWLYRRRRFRVAPNLTSFGGTVSNSPSRPGSSLLQPLPLMVLRVAPGAPSSGFAGGDSSGCPEALIPRLCRLVALRVSPNLPPSDICRFRSSGLPQIGFLGGSMMNPRFARTLHPRSIQLTFLQVAPKLPLPAAPRMNLQTHSGFAFLPTLRCSLNLYPLFACRRTGLLRTTINQFPIACRAGLQSVS
Ga0184571_104188	Ga0184571_1041881	F016972	LTPLTDEIPVVNLYLTINGSYRGSFGAKTSRYGPYELGYRRATKTFTKXC
Ga0184571_104425	Ga0184571_1044251	F009017	VVPSDPIPSLAHRGHASALSSAFRNAERLACLLPDYRFAGHRFNAFRRAAACLPKLNRSPVTAFPSPATAFAFANSIPRSMVPACYFAVSSTGWNTRSAIQLRRRNWLAPIPATSSLQARCILASQLMRLLSPSPLPSRSFCSFGINAFNGRRRRPVHLPNPPDFHSLPAILSIARKGCGSSSVVRYVSGGLLFL
Ga0184571_104434	Ga0184571_1044342	F023505	WNDKDDRKEVGEVPRIIPGDRGKVESGWLAQPLEDRFARGGNRRQYSPVPLAAFARSQ
Ga0184571_104499	Ga0184571_1044992	F010305	LKRAEKPHSKFSGRKALDGPATRPRTPLAVENGVGKLTAPEKGAPNVSPGKREWRTP
Ga0184571_104557	Ga0184571_1045571	F089618	GLVVQPVLRPSATPAANLQLSLPLLPLAAPVSNLRLASAALPPARPRANPPARIGVFSPGSTGGKHPARTVCYALPIDWLLTFQLALASGLQLGLRLLPTHIWCRPSARQVLRLPVLTGFRRNHRLAPVAAAAPTRAGCCPLLPHRPRTSDSHRLLFRRLCRSQLTQLALCAPTSGWAFDAPLASTEPCIAS
Ga0184571_104602	Ga0184571_1046021	F072836	CNLKQRAGTPNERSILTREWSFRSATRRHQPMPVALARDTLPHRGPASLDLHAPACARRVPLAWTGQMEGRSVRGKASRALLDDVARALLVAPRAPGSPVRLVMRSGGPRHSSPRPRFPFDASPRRATPSKEPGCLLPRRNPYASGGWLLRARLDRGLVTPPPERHCSETRAPLLPALQRLLLTRKALEPARPTVSRGAEASLERPVAAPVTASTTE
Ga0184571_105128	Ga0184571_1051281	F058585	PCTPARPVANLPARIGFVSFGSTGCKPPTCVDCSALPLVLRRSIWLAPDDPGLIGLAPDNPGSTRLAPHGPFLRLGRQPTSDSHRCRPLARLAASSGLRLMLPLPLGWLRFQFALAASPSALTVREPLGLRLVAPSPAEPVMHSLFQLNLASPAKPSMSILYPLALASSGIFQLNNFRLASAFALLVRPAIPLRLAPQ
Ga0184571_105354	Ga0184571_1053541	F059538	VNSVVQPLLRPSATPVARLQLSLPLLPLAAPVSNLRLASAALLPARPRANPPARIGVVSPGSVGGKCSAFAVNYALPIDWLLTFQLALASCLQLGLRLLPTHIWRCPSARQVSHLPVLTGFCCNN
Ga0184571_105385	Ga0184571_1053851	F003050	MESAKAGAVAGEGKAVTSLRSSFGKISCGAPESVEAVTAKKVAGEQTGKAHGAPRRGAQYGCMPVVSKAGNR
Ga0184571_105497	Ga0184571_1054971	F024793	VNSASPELSLWFQRSRINQPDPAFPRSPGIIQKPSNLNL
Ga0184571_105564	Ga0184571_1055641	F031323	MVASTLSNSSDLKGDLTVTLANDSVFSQINKIWERHRKQGMEDRHRTGVLLNNKFGKPNVRRQAYGEKLLKAYSISLGIAVSELSRMRGFARRFKSIEDLNAQHPDVKTWTQVKELLASLRKSQMQTAQAPKDDDQKKSRGSQPMRHALRAIQAVRQCFSEVHLALDGDERTVLNEAVKEMLSGIEKTLGVRFTPQDTFPAMMYSPLQDAAQMPPLTVVA
Ga0184571_105598	Ga0184571_1055981	F001380	VRFATRCSLINSSSLSAAAFQPATGHSDQHILVGLSTLPEPESRYGLSLAHNDAFATIARSMFLACIFVSTSKTFASPFDSWLFRSVRFRGRTGAMSTPGTRFPLQSSILRNHPQSPLPFGPSFENPSDQSVRPVPNPEARLTRRPIVPYSPPHPLAIPLRISARNSLRLSLTY
Ga0184571_105685	Ga0184571_1056851	F011395	VAGERKAVARCRFQLGWTQATSKALIRSSQKGRRGAEELPPVIWLQSSEPCMPASGQAEL
Ga0184571_105974	Ga0184571_1059741	F045560	RTEADRIGRKKEEASFRIIPGDWGKVESGWLAQPLLEPVERPGGGGRIHQFLWRRSRAVSKREKGTER
Ga0184571_106225	Ga0184571_1062251	F025750	MEKADAHRSIDPLPAKTGSGEQRAHVTPSSDAKFRPCMPVGERADRRVTWNELID
Ga0184571_107995	Ga0184571_1079951	F003050	MESVKAGAVAGEGKAVTSERFSFGKISCGASESVEAVAAKPAAGEQTDNAHGAPERDAQYGCMPVVSKAGNRVTWNH
Ga0184571_108375	Ga0184571_1083751	F028056	PGFTARLSEPPACSALDPQPDTPDSTSAARRRRFSARAGSVQQTFPQRTCIRPEPETRNGLSLARNDAFATITRSTFLACPFESTYKLCADPFHRRLSTRFGFEAATGRIHHPRPVIHASLTRSHDATPSPLPFGPFRPSGSKRSTGFITGSSPCRTPDLPLTPRRAFFRLRCGSMFKTPLRPAWLSF
Ga0184571_108412	Ga0184571_1084121	F009043	LISQPNSPPACAALSFAIRVARCCPFRSPPPSFESSGSMRPGSPAGFPAWNRYLEAAFHSPKTTVRLRTAISRSKFPTYSFDTLPNVHPARSVSDSPTRSGSPRYAQDPHQKPVARLPSGSPNRSSDLHSPLGPFGPFRIKAFNPIPGQEAHLPNSFDCLSLPGSDSILLVPMPDHCSRLASCSAARCS
Ga0184571_109503	Ga0184571_1095031	F001418	EAEFTSSSGSVRALSVHAKKELSREERLETVPSRVK
Ga0184571_109636	Ga0184571_1096361	F060153	ENMMTRLALLSTAVSLSLLATPVLAQTFSAPNGNDTVATREQGNTATVGQVGNPNYNSWNSGGIPIIGPLFGAMTAPVAMATGNGWNQGPACGLYHDFNGRYTSVCGL
Ga0184571_109948	Ga0184571_1099481	F003269	VKTRIRIRRRVLAWFVSRWRNHQLKQAEKPHSKFSARKTLDGPATRPKTPLAVENSA
Ga0184571_110111	Ga0184571_1101111	F001024	MRPVTPLAVENGVGKLAANGRQMPARERECGELPS
Ga0184571_110694	Ga0184571_1106941	F025423	PSDPISSLAHHGHASALSTAFRSAVRLACLLPGNRFGGYRFNAFRRAAAYLSETGPFARNGLSLARNGSRLRGLHSGVKGPGLLLRCLDCRLPSPFGLSAPLPELVCPNSRRFLASDPLPFRRQTYPTALSISTPLQEFWLPRDQSVQWASLPSGPPSEAARFPLAPRSLFYC
Ga0184571_110767	Ga0184571_1107671	F080063	VALGQRAAKSGGRPSAKGEEAETQSQTSLYLVRESASANAGPSEPRGLALRFSRRKALNGPAMRPQLRLPWRMASGSQQPLRGRQMLVRERECGELPS
Ga0184571_111726	Ga0184571_1117261	F040634	MHGTEHRISDRRAYSPQAPRLLAYPASASSLLDTPQLIFPKQDRSLVAAFPSPKMPSACADSTLRSMVLACNFAHWLAVRPARSAFWLPRQRLVGPSSRRHPRLKPVAFSTGPLCQLCRQVPLPFRSFPSLRINALPGFATVRSAFRNCPIFVRSPQPFYLKFGCGS
Ga0184571_111746	Ga0184571_1117462	F060406	STTGCRVLRLPQRPTSRFRLRSRPLAALAPNLRLASPASHSSSTGGRLRRLGSTFCRSARTVANLRLSPALRASVRPLADLPTFVGVLPQARPRTNFRFAPDFDPSTRLVSNFRFAPVVVATSACAFCCCGLWLAPVPPVCQTGGELPTRIGCSSSGFTGFDSLGLRLVLLPPAGFLMHP
Ga0184571_112151	Ga0184571_1121511	F009606	SSAKNTGNNEAGRGANVVRTKAKPKVNPVTGGNFEYVSEPRIGDSYVVVVAGPGGVQSFTFHHPIGLTDVDSEDWVCTPTADIQSLLARKEDPDERDRKSKRDRYRLELAVQAKLLEKRDSDGLLVYPNSGTNRQDALAAARTAAKDAVKAEKGKPSPDLYIRFLEQNVQGPESKVRKFLADPETIKRAETKFPSSGYRTRSGPLADRDQVEVEYLIGLSRPQAMDATTKRIFGLGGDDE
Ga0184571_112153	Ga0184571_1121531	F004183	ERLRGANEDRAIPEGGPNGCEASRGVDPKGAKTPEGERKRAAQLAKQAGKECNGFEAWMQPEAGANQRLAAEPKSRTGRNTGKRVSEVAGQDL
Ga0184571_112300	Ga0184571_1123001	F018933	RSRITPRSTLDSLYRPRIAPRSVLIDRCCPPIARRSTLNARRRSQIAPRSTLCARAGHGLLHVQHLESSPRVQIAPYSTLCAPRRSQIAPRSTLPARYRSRIAPLSAIDAPCRSTDISVRLHFAPCAVHGLLRAQHFKLRTAHRLLCVRRLHFVPIVDCSAFLTPCLVSLADCSVLNT
Ga0184571_112675	Ga0184571_1126752	F065812	LNIYRRPIAYKYCEGKMKRTLKRGLKDLKSLKRKQ
Ga0184571_113531	Ga0184571_1135311	F062493	VCRKALIPGQRNRPRGSGTAKHPELLNAVFYAEHAGREQGWEL
Ga0184571_114323	Ga0184571_1143231	F048323	FDSLTGITESESGKSSEALKITGRPELHKNENSKEVKKRVN
Ga0184571_114940	Ga0184571_1149401	F062326	VHGTIERTTGMLGVRSATGRSGFVVFRSPATPFGTRRVSAKNASSRLASRRSRKLGTAFRSPVTTLSPPLRGQRSCPAPSLPRRCFFAYPLDQKLLRSVRFRSRNRANSSPSTRCPRRSPALLRCHPVSTPLRAFPPSGSKRSTGFIATSSPRLTPDLSFAPRGAIFRFRPGSTLETRFVLLGYRS