3300018563: Metatranscriptome of marine microbial communities from Baltic Sea - GS684_3p0

Overview

Basic Information

• IMG/M Taxon OID: 3300018563
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0129055 | Gp0214189 | Ga0188861
• Sample Name: Metatranscriptome of marine microbial communities from Baltic Sea - GS684_3p0
• Sequencing Status: Permanent Draft
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 16542098
• Sequencing Scaffolds: 16
• Novel Protein Genes: 21
• Associated Families: 20

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	8
All Organisms → Viruses → Predicted Viral	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Autographiviridae → Kajamvirus → Synechococcus virus SRIP1 → Synechococcus phage S-RIP1	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Llyrvirus → Synechococcus virus SSKS1	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Metatranscriptome Of Marine Microbial Communities From Baltic Sea
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Metatranscriptome Of Marine Microbial Communities From Baltic Sea

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Baltic Sea
• Coordinates
  • Lat. (^o): 54.570232
  • Long. (^o): 11.332183
  • Alt. (m): N/A
  • Depth (m): 15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000797	Metatranscriptome	886	Y
F003495	Metagenome / Metatranscriptome	483	Y
F003977	Metagenome / Metatranscriptome	459	Y
F004235	Metagenome / Metatranscriptome	447	Y
F010357	Metagenome / Metatranscriptome	305	N
F012226	Metagenome / Metatranscriptome	282	Y
F018004	Metagenome / Metatranscriptome	237	N
F018014	Metagenome / Metatranscriptome	237	Y
F020386	Metagenome / Metatranscriptome	224	Y
F022113	Metagenome / Metatranscriptome	216	Y
F025320	Metagenome / Metatranscriptome	202	Y
F033992	Metagenome / Metatranscriptome	176	N
F036151	Metagenome / Metatranscriptome	170	N
F049005	Metagenome / Metatranscriptome	147	N
F063493	Metagenome / Metatranscriptome	129	N
F072425	Metagenome / Metatranscriptome	121	N
F078928	Metagenome / Metatranscriptome	116	Y
F082557	Metagenome / Metatranscriptome	113	N
F087904	Metagenome / Metatranscriptome	110	Y
F102084	Metagenome / Metatranscriptome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0188861_1000022	Not Available	2765
Ga0188861_1000041	All Organisms → Viruses → Predicted Viral	2313
Ga0188861_1000147	All Organisms → Viruses → Predicted Viral	1520
Ga0188861_1000307	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1133
Ga0188861_1000323	All Organisms → Viruses → Predicted Viral	1115
Ga0188861_1000440	Not Available	980
Ga0188861_1000684	Not Available	835
Ga0188861_1000874	Not Available	763
Ga0188861_1000887	Not Available	759
Ga0188861_1001147	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Autographiviridae → Kajamvirus → Synechococcus virus SRIP1 → Synechococcus phage S-RIP1	684
Ga0188861_1001148	Not Available	684
Ga0188861_1001247	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	661
Ga0188861_1001296	Not Available	652
Ga0188861_1001618	Not Available	594
Ga0188861_1001860	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Llyrvirus → Synechococcus virus SSKS1	564
Ga0188861_1002430	All Organisms → cellular organisms → Bacteria → Proteobacteria	505

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0188861_1000022	Ga0188861_10000222	F036151	MKPTRTELLTAWMTLVKVRETYCQPEVDQYEQTVLLDVLKMLDKLQQIEGKK
Ga0188861_1000022	Ga0188861_10000226	F018004	MGTVSTLDRNAEQVRDVLRNLLEQCEAGNICGAVIVTEHLDGFDLDMPGTFSTDPDSIASITGRLQMAAHSFYQMSWEDDDEI
Ga0188861_1000041	Ga0188861_10000415	F012226	ARDQNSNFDTMIQILQMRGNITWEVPPQKIELPTPGNYNFGSYYEGQHNTWHFQFFTEQSGVYGDISDPTENLVEDFNLVPVITDCTNTAHMPIQTFVTQDLKGTDEQKVIGALAGGVINTYFSYAGHIDK
Ga0188861_1000147	Ga0188861_10001472	F004235	MATSSRTVAPLIAESRMIGKPITMISVDWDVDADGSLLAMEAIHNAILSRGTIIAAGAVYDTGTKQDYILEGNLTDTINNFTSLDGTVSGTLAQVLVEDIVNLGTVDSIDFTSGTVACSIKTTLKFA
Ga0188861_1000147	Ga0188861_10001473	F020386	MTISRNNFTSLPVAAEQEGVDVSYFTVDFINAMNSETGDPQADSTAAGLALVQAAIMNQGINILATGPLGNANTELTYMVRTDSLDVANHITANGLRDAIRAVDTAGRAASAIPRNTANFSSATVTAKTLAIAV
Ga0188861_1000147	Ga0188861_10001474	F025320	MTTKINPTKLNTTDHLSGKTITAVTVDFAVNGTDFSSTEMGPLGAVQAAIATMTQEATPIIITKLRSDGSNAGQVFDMVFEGEFGTDTYDGTNSEAFAAYLQTVVRLLTSVGAGSVNLNSATVVAATAASF
Ga0188861_1000307	Ga0188861_10003072	F078928	MIREAQKNSDEMSEDVYWDRLDSANHLADECKARIQQIFNDTFGG
Ga0188861_1000323	Ga0188861_10003233	F020386	MTISRNNFTSLPVAAEQEGVDVSYFTVDFINAMNSETGDPQADSTAAGLALVQAAIMNQGINILATGPLGNANTELTYMVRTDSLDVANHITANGLRDAIRAVDTAGRAAGATPRNTADFSTATVTAKTLAIAV
Ga0188861_1000373	Ga0188861_10003732	F022113	TNILELDTKFASQLFDIQSAKRMIREAQKGKEDLSEDVYWDRLDTANHLADECKGRIQQIFNDTFGA
Ga0188861_1000440	Ga0188861_10004402	F063493	MQTIFLIVLAVAIVGYLVMNREGLRWDRGFAGFRPAVTGVITEGNLEITGNPVEDVAIKALMIKKIVDATTEEIFRTKGLKMFPIETIFIQVFDSPDKIKELKQKRPDVYDAYVKFLQARDKDAVLTRNGDGTEQEQLARTALINYLEALKRDQDYNTVPDNVPATYRCRPIVSRITNHW
Ga0188861_1000684	Ga0188861_10006842	F003977	MPRKKLTKEQMDYREGVADFKSWLKLNKGFEDRGLHGTDYYVRMVEELEAKLKRSESKLKRKVKK
Ga0188861_1000874	Ga0188861_10008741	F000797	TAQCAAKCPSGSCTVLSPSYSSKAAWANGNSLYCYTVFVNEVGSAKSANPKDLAILKYQKSNGVGIFGCDASSVFSDKTVDFGGASTTAVTPTADWKKYMRKDKPTMYLNTPVFMGVWKQIKAESTYASFSWTVKADVPTVFLPGLLKDRLAQFPETPTGTYVETCNKVLMGYFGNLEVTSKTGMKRFLEQFEGYYANGGKCWRWDTAECKSAWKYGPWGEDLFMQRTMDDAEVMKKSDFTLTDTGTCPGMRPK
Ga0188861_1000887	Ga0188861_10008872	F033992	MTHEYDLTDQSDLDMLDEVDGEYYNWDQNHSGYLWLTDACVEKYGLEKGMDVEPIAWEYYDDDYYDEYREKGLKWDLYIQQYASVHDKDGKYLRDCTYEDWEVCKANGIKEEMLSDEGCEVMGWCDG
Ga0188861_1000887	Ga0188861_10008873	F018014	MIVNLTKNEIKHLVYLLGRGDGDYPELNQNLLNKLGSLIEVCTCKEKD
Ga0188861_1001147	Ga0188861_10011472	F082557	MLKRQTLKTWRYTTTDGQVQWLLAPDSEHAIWAAVELSGGSEYLKDVYLDNDEW
Ga0188861_1001148	Ga0188861_10011481	F087904	MALTAEQQADVDKQAAMEQARVEAQATENAKGRKMETLRMAKEILVENRRTQAAADATDITASAVTALATDLNTFVNS
Ga0188861_1001247	Ga0188861_10012473	F003495	MKENNEKKVKNSKENSKLIKAFPKHIAALDKRSVLAKVNSKGSGR
Ga0188861_1001296	Ga0188861_10012961	F072425	MNIEFSTSSMLQSPVIVDTNAGTATLTYKNSGKDYTYNIDNNFVTDLQETITNDQSVGKFILAARADRRLTEVVSV
Ga0188861_1001618	Ga0188861_10016182	F010357	MFLYDSCHNNFNCNRRSIMYIDVKYNFRPNPKCRAEVVRYVERMYSLSEVKSKCGQTDVDGGRVLCDACCELADNMERANEL
Ga0188861_1001860	Ga0188861_10018601	F102084	MNTDKHTSNDTNSEKTNTQLMISPLPNLITTGLIFLTVFAIILAGYIHGHMSISAV
Ga0188861_1002430	Ga0188861_10024301	F049005	VRSNVSMRNILTTYASDAGDSPITKLQFGLVYDNDNFLPTTGTAGDDSTATTTKVGFIKDKISEALYGTFTERMQVYNPTAGSGLILNEEITAEPVLLVSQDEIMDAITVTEAVDTATMVSGFRPTLASELATDNADNDTAE