3300018542: Metatranscriptome of marine microbial communities from Baltic Sea - GS677_3p0

Overview

Basic Information

• IMG/M Taxon OID: 3300018542
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0129055 | Gp0214169 | Ga0188841
• Sample Name: Metatranscriptome of marine microbial communities from Baltic Sea - GS677_3p0
• Sequencing Status: Permanent Draft
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 4219165
• Sequencing Scaffolds: 8
• Novel Protein Genes: 9
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Candidatus Poseidoniia → Candidatus Poseidoniales → unclassified Candidatus Poseidoniales → Candidatus Poseidoniales archaeon	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2
Not Available	2
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Metatranscriptome Of Marine Microbial Communities From Baltic Sea
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Metatranscriptome Of Marine Microbial Communities From Baltic Sea

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Baltic Sea
• Coordinates
  • Lat. (^o): 58.581234
  • Long. (^o): 18.232801
  • Alt. (m): N/A
  • Depth (m): 9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000237	Metagenome / Metatranscriptome	1498	Y
F004793	Metagenome / Metatranscriptome	423	Y
F005781	Metagenome / Metatranscriptome	390	Y
F007749	Metagenome / Metatranscriptome	345	Y
F032484	Metagenome / Metatranscriptome	180	Y
F034583	Metagenome / Metatranscriptome	174	N
F051945	Metagenome / Metatranscriptome	143	Y
F078928	Metagenome / Metatranscriptome	116	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0188841_100074	All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Candidatus Poseidoniia → Candidatus Poseidoniales → unclassified Candidatus Poseidoniales → Candidatus Poseidoniales archaeon	1805
Ga0188841_100219	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1126
Ga0188841_100253	All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Candidatus Poseidoniia → Candidatus Poseidoniales → unclassified Candidatus Poseidoniales → Candidatus Poseidoniales archaeon	1064
Ga0188841_100388	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	885
Ga0188841_100428	Not Available	850
Ga0188841_100516	All Organisms → cellular organisms → Bacteria	781
Ga0188841_101102	Not Available	549
Ga0188841_101332	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	501

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0188841_100074	Ga0188841_1000742	F032484	MKKLDSIDKLLNIDHNNKVITQKRELNPPSFNARFRGKVREKYPDYELK
Ga0188841_100219	Ga0188841_1002192	F078928	IGRHRGAKRMIREAQKNSDEMSEDVYWDRLDSANHLADECKARIQQIFNDTFGG
Ga0188841_100253	Ga0188841_1002532	F032484	MKKTDNIDKLLIIDHTNKVITQKRELNPPSFNARFRGKVREKYPDYELK
Ga0188841_100388	Ga0188841_1003883	F007749	TYLGITIANPSDDYTLLTQSVSAGNQFCYRRRQESGYTDSLTTSPGGDATLGTLMYCAALWRSRGSIENTYATFDGMGTATQQSLTPIVKQLLAIPRPQVA
Ga0188841_100428	Ga0188841_1004282	F004793	MNLIEAKKIVGNQPTWALKNMVKALKMLPALNTAEDELNLQAAKVVLRERNKK
Ga0188841_100446	Ga0188841_1004461	F000237	DGXLLGGYAFFXFHYIIALGISLSATHLSDLTLTIVANIFXSVLNFTYKTYYIIFTNKHLNTDQLTRLMVLHYFTPXYYLYLVQLHGMFCHESXDSDSGESVYEDKSGSYISXFYDAFLKEIQDAXYXVLYFFVYFLTHHFNPSTVNYFFFERXNISELDEIRFYGVAPHXYFRPLMGLLVVSPSHYEGLMXMGLXFVLLASLPIIYSFYNSNNQYLPTIPMQHSLLQTGCFITFMLSMYCTASMLPCGRYYYEPEGGYVGNPXVKFSYQYAYIYMG
Ga0188841_100516	Ga0188841_1005161	F034583	QLDPFVVCESSVSLLLVFWTLIFLFVYILVPLVKLRFVIVSEKNALHQVEETCKPFYGNTFKFNDTFF
Ga0188841_101102	Ga0188841_1011021	F051945	SQSQLLYFLFSAKKTEVFTEDVISTEKSLTDNVLEGSNWEFLSVVSVPKNVNISFTVKHPKMNFYNDYIEMKLGRDVCSKHYLFVTDNITVDFASCAISNTNHQALSDLMEGDFQYIISDNGNEMILKNNSETEITLRRVAQLGTSTPVSTSMSINTTVQ
Ga0188841_101332	Ga0188841_1013321	F005781	MAYTDLFNEAIDDLTASLTAVSGLRVVNDATKIVPNCVFIDAPSFTTMAGNGNVIRLEFPIRVIG