Sample 3300018412

Overview

Basic Information
IMG/M Taxon OID	3300018412 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0114818 \| Gp0116264 \| Ga0194136
Sample Name	Freshwater microbial communities from Pennsylvania, USA, analyzing microbe dynamics in response to fracking - TARM_MetaG_T3A_14
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	661153517
Sequencing Scaffolds	15
Novel Protein Genes	16
Associated Families	14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	1
Not Available	8
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	aquatic biome → hydraulic fracturing → fresh water
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Location Information
Location	USA: Pennsylvania
Coordinates	Lat. (^o)	41.2451	Long. (^o)	-76.9856	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F002233	Metagenome / Metatranscriptome	580	Y
F013347	Metagenome / Metatranscriptome	272	Y
F017344	Metagenome / Metatranscriptome	241	Y
F022301	Metagenome / Metatranscriptome	215	Y
F026495	Metagenome / Metatranscriptome	197	Y
F030941	Metagenome	184	Y
F034115	Metagenome / Metatranscriptome	175	Y
F075800	Metagenome / Metatranscriptome	118	Y
F080133	Metagenome / Metatranscriptome	115	Y
F080175	Metagenome / Metatranscriptome	115	N
F083742	Metagenome / Metatranscriptome	112	Y
F087432	Metagenome	110	Y
F088556	Metagenome	109	Y
F090615	Metagenome / Metatranscriptome	108	N

Family

Category

Number of Sequences

3D Structure?

F002233

Metagenome / Metatranscriptome

580

F013347

Metagenome / Metatranscriptome

272

F017344

Metagenome / Metatranscriptome

241

F022301

Metagenome / Metatranscriptome

215

F026495

Metagenome / Metatranscriptome

197

F030941

Metagenome

184

F034115

Metagenome / Metatranscriptome

175

F075800

Metagenome / Metatranscriptome

118

F080133

Metagenome / Metatranscriptome

115

F080175

Metagenome / Metatranscriptome

115

F083742

Metagenome / Metatranscriptome

112

F087432

Metagenome

110

F088556

Metagenome

109

F090615

Metagenome / Metatranscriptome

108

Scaffold	Taxonomy	Length	IMG/M Link
Ga0194136_1000739	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	16483	Open in IMG/M
Ga0194136_1054779	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	1695	Open in IMG/M
Ga0194136_1072942	Not Available	1419	Open in IMG/M
Ga0194136_1081157	Not Available	1327	Open in IMG/M
Ga0194136_1105584	Not Available	1125	Open in IMG/M
Ga0194136_1181527	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	793	Open in IMG/M
Ga0194136_1203738	All Organisms → cellular organisms → Bacteria → Proteobacteria	737	Open in IMG/M
Ga0194136_1220615	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	700	Open in IMG/M
Ga0194136_1244725	Not Available	655	Open in IMG/M
Ga0194136_1252040	All Organisms → cellular organisms → Bacteria	643	Open in IMG/M
Ga0194136_1293366	Not Available	584	Open in IMG/M
Ga0194136_1325639	Not Available	547	Open in IMG/M
Ga0194136_1341188	Not Available	531	Open in IMG/M
Ga0194136_1361197	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	513	Open in IMG/M
Ga0194136_1362727	Not Available	511	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0194136_1000739

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium

16483

Open in IMG/M

Ga0194136_1054779

All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus

1695

Open in IMG/M

Ga0194136_1072942

Not Available

1419

Open in IMG/M

Ga0194136_1081157

Not Available

1327

Open in IMG/M

Ga0194136_1105584

Not Available

1125

Open in IMG/M

Ga0194136_1181527

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

793

Open in IMG/M

Ga0194136_1203738

All Organisms → cellular organisms → Bacteria → Proteobacteria

737

Open in IMG/M

Ga0194136_1220615

All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium

700

Open in IMG/M

Ga0194136_1244725

Not Available

655

Open in IMG/M

Ga0194136_1252040

All Organisms → cellular organisms → Bacteria

643

Open in IMG/M

Ga0194136_1293366

Not Available

584

Open in IMG/M

Ga0194136_1325639

Not Available

547

Open in IMG/M

Ga0194136_1341188

Not Available

531

Open in IMG/M

Ga0194136_1361197

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

513

Open in IMG/M

Ga0194136_1362727

Not Available

511

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0194136_1000739	Ga0194136_10007395	F002233	MRGVQSLLRNAPAKIGRRLAQIVAIAAASLPQAGA
Ga0194136_1054779	Ga0194136_10547793	F075800	AADAGLMQIEWSEGEVLKVAGVGTEAEKEVGEGVGAGVDSRRRSERGHEVGIGSGAGRTGAERGEPCRVFELWASRFMPQL
Ga0194136_1072942	Ga0194136_10729421	F087432	YRVTLQNRGVEETHYANFRTHWEDMVAKHDHLTNLNFEQITFSAEQDARLQEISELSIPQGFQAQVREYVENGNFPEGYEHPLSDLKLKKERLQHQNDIDEAYQMILESEGLI
Ga0194136_1081157	Ga0194136_10811573	F087432	IIYENGEYTPCTYRVTLQNKGVEETHYANFRTYWEDMVAKHEYLTNLSFEEITFSAEQDARLQEISELNIPQGFQAEVKEYVENGNFPEGLNNPLAGLKYKKEMNDAYKMILESEGLI
Ga0194136_1105584	Ga0194136_11055841	F087432	ETHYANFRTYWEDMVAKHEYLTNLSFEEITFSAEQDARLQEISELNIPQGFQAQVREYVENGNFPEGYEHPLSDLKLNKERLQHQNDIDEAYQMILESEGLI
Ga0194136_1181527	Ga0194136_11815271	F022301	PGFNAAEPDKSRFAYFTADDTIGCYFRPHYAFAKVPGDSMKFQCWHMTVDGAFYSRKGEPIRVDEVKVVVAKDKSGEKSASLYPRNDDKDEHEIKADHFKIKYLKPPYPDHNPRFNEVFTAVATTRIMWVLGFPADYVYPAGAANCIGCADDPFGKKLADNKASLKDAPATFKVVNAERELPWDQINPQDDETWSWTDAVKFYSNGEWTHQQKVEFDAYRLALGLIHYFNALPQQNRVVCAEWEPEVAGKSKVCRKPMIYVHD
Ga0194136_1186184	Ga0194136_11861842	F088556	MLKEIRKDIFTQAEYAKKVCKSRAWVNQQIKSGNLKTLTVNGAVLVKI
Ga0194136_1203738	Ga0194136_12037382	F090615	LAAPEPTDPSLIAALRVRKGWLRPDSPIVDKAAAEGLKKLGALLCPPPDADKRSATVKQINEVATEYLKAVPQARLLIEESAVEHQAFWDPDQPYVERTDVQLHGNLVTAIKTANADRLRAAEAKAAAVS
Ga0194136_1220615	Ga0194136_12206152	F013347	VFRSLADIMDACEMAWNRFATNTGLVRSLCAVAWAPASSAP
Ga0194136_1244725	Ga0194136_12447251	F080133	ITHWLAKHRSAMLPAGTELVMELNRPMVMSPNSGQ
Ga0194136_1252040	Ga0194136_12520402	F080175	PHPPQAFVHLLGHGHDPFLVALADDAQDATGLVDGGDGKSSGLADPQAAAVNQAETAAVYRIADRGENAPHFGMGKRLRQPPLLGKPDLFLNSAQSWPSVFR
Ga0194136_1293366	Ga0194136_12933661	F026495	VFGVTAASRNTRFQAARYGLTWAGLAPADRASLAWRLPSFDHLV
Ga0194136_1325639	Ga0194136_13256391	F017344	VTMTARRQISLPEELCASAELQFGARFESVELLLEFVLRELARNDAEGLDQAEHAVLEQRLRDLGYI
Ga0194136_1341188	Ga0194136_13411881	F030941	VIVLLMTIPSAFGALVIYHVFVRRKHEPADKSNRINHFRLVWFALTREELFVNLFPWMKRDEYDNMHS
Ga0194136_1361197	Ga0194136_13611972	F034115	MRGFAEVFLDLTRTIKRVHELKLKNDNTEAYLLSCDITDYAQELEDVLQKDANIQ
Ga0194136_1362727	Ga0194136_13627272	F083742	EATKRTEEINQLKQELAKKDEETAKIKAETDAKLALMQEQMAAILAAVGEKKPRKKKSVEEA

Scaffold ID

Protein ID

Family

Sequence

Ga0194136_1000739

Ga0194136_10007395

F002233

MRGVQSLLRNAPAKIGRRLAQIVAIAAASLPQAGA

Ga0194136_1054779

Ga0194136_10547793

F075800

AADAGLMQIEWSEGEVLKVAGVGTEAEKEVGEGVGAGVDSRRRSERGHEVGIGSGAGRTGAERGEPCRVFELWASRFMPQL

Ga0194136_1072942

Ga0194136_10729421

F087432

YRVTLQNRGVEETHYANFRTHWEDMVAKHDHLTNLNFEQITFSAEQDARLQEISELSIPQGFQAQVREYVENGNFPEGYEHPLSDLKLKKERLQHQNDIDEAYQMILESEGLI

Ga0194136_1081157

Ga0194136_10811573

F087432

IIYENGEYTPCTYRVTLQNKGVEETHYANFRTYWEDMVAKHEYLTNLSFEEITFSAEQDARLQEISELNIPQGFQAEVKEYVENGNFPEGLNNPLAGLKYKKEMNDAYKMILESEGLI

Ga0194136_1105584

Ga0194136_11055841

F087432

ETHYANFRTYWEDMVAKHEYLTNLSFEEITFSAEQDARLQEISELNIPQGFQAQVREYVENGNFPEGYEHPLSDLKLNKERLQHQNDIDEAYQMILESEGLI

Ga0194136_1181527

Ga0194136_11815271

F022301

PGFNAAEPDKSRFAYFTADDTIGCYFRPHYAFAKVPGDSMKFQCWHMTVDGAFYSRKGEPIRVDEVKVVVAKDKSGEKSASLYPRNDDKDEHEIKADHFKIKYLKPPYPDHNPRFNEVFTAVATTRIMWVLGFPADYVYPAGAANCIGCADDPFGKKLADNKASLKDAPATFKVVNAERELPWDQINPQDDETWSWTDAVKFYSNGEWTHQQKVEFDAYRLALGLIHYFNALPQQNRVVCAEWEPEVAGKSKVCRKPMIYVHD

Ga0194136_1186184

Ga0194136_11861842

F088556

MLKEIRKDIFTQAEYAKKVCKSRAWVNQQIKSGNLKTLTVNGAVLVKI

Ga0194136_1203738

Ga0194136_12037382

F090615

LAAPEPTDPSLIAALRVRKGWLRPDSPIVDKAAAEGLKKLGALLCPPPDADKRSATVKQINEVATEYLKAVPQARLLIEESAVEHQAFWDPDQPYVERTDVQLHGNLVTAIKTANADRLRAAEAKAAAVS

Ga0194136_1220615

Ga0194136_12206152

F013347

VFRSLADIMDACEMAWNRFATNTGLVRSLCAVAWAPASSAP

Ga0194136_1244725

Ga0194136_12447251

F080133

ITHWLAKHRSAMLPAGTELVMELNRPMVMSPNSGQ

Ga0194136_1252040

Ga0194136_12520402

F080175

PHPPQAFVHLLGHGHDPFLVALADDAQDATGLVDGGDGKSSGLADPQAAAVNQAETAAVYRIADRGENAPHFGMGKRLRQPPLLGKPDLFLNSAQSWPSVFR

Ga0194136_1293366

Ga0194136_12933661

F026495

VFGVTAASRNTRFQAARYGLTWAGLAPADRASLAWRLPSFDHLV

Ga0194136_1325639

Ga0194136_13256391

F017344

VTMTARRQISLPEELCASAELQFGARFESVELLLEFVLRELARNDAEGLDQAEHAVLEQRLRDLGYI

Ga0194136_1341188

Ga0194136_13411881

F030941

VIVLLMTIPSAFGALVIYHVFVRRKHEPADKSNRINHFRLVWFALTREELFVNLFPWMKRDEYDNMHS

Ga0194136_1361197

Ga0194136_13611972

F034115

MRGFAEVFLDLTRTIKRVHELKLKNDNTEAYLLSCDITDYAQELEDVLQKDANIQ

Ga0194136_1362727

Ga0194136_13627272

F083742

EATKRTEEINQLKQELAKKDEETAKIKAETDAKLALMQEQMAAILAAVGEKKPRKKKSVEEA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300018412: Freshwater microbial communities from Pennsylvania, USA, analyzing microbe dynamics in response to fracking - TARM_MetaG_T3A_14

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences