Metagenome Family F088556

Overview

Basic Information

• Family ID: F088556
• Family Type: Metagenome
• Number of Sequences: 109
• Average Sequence Length: 49 residues
• Representative Sequence: MSKEIRHDIYTQAEYAKKIGVSRARVNQMVKNGELKTLTINGATLIKV
• Number of Associated Samples: 83
• Number of Associated Scaffolds: 109

Quality Assessment

• Transcriptomic Evidence: No
• Most common taxonomic group: Unclassified
• % of genes with valid RBS motifs: 0.00 %
• % of genes near scaffold ends (potentially truncated): 0.00 %
• % of genes from short scaffolds (< 2000 bps): 0.00 %
• Associated GOLD sequencing projects: 69
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.62

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Unclassified (100.000 % of family members)
• NCBI Taxonomy ID: N/A
• Taxonomy: N/A

Most Common Ecosystem

• GOLD Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge (21.101 % of family members)
• Environment Ontology (ENVO): Unclassified (53.211 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline) (39.450 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 22.37%
  β-sheet: 15.79%
  Coil/Unstructured: 61.84%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF03796	DnaB_C	6.42
PF08299	Bac_DnaA_C	6.42
PF01555	N6_N4_Mtase	5.50
PF14297	DUF4373	5.50
PF04383	KilA-N	2.75
PF05766	NinG	2.75
PF01844	HNH	1.83
PF09588	YqaJ	1.83
PF14359	DUF4406	1.83
PF05772	NinB	1.83
PF07690	MFS_1	1.83
PF04404	ERF	1.83
PF08800	VirE_N	1.83
PF00145	DNA_methylase	1.83
PF07105	DUF1367	1.83
PF09643	YopX	1.83
PF00772	DnaB	1.83
PF13392	HNH_3	1.83
PF00436	SSB	1.83
PF13148	DUF3987	0.92
PF09250	Prim-Pol	0.92
PF08241	Methyltransf_11	0.92
PF00574	CLP_protease	0.92
PF12728	HTH_17	0.92
PF03237	Terminase_6N	0.92
PF00271	Helicase_C	0.92
PF13155	Toprim_2	0.92
PF08309	LVIVD	0.92
PF04542	Sigma70_r2	0.92
PF12323	HTH_OrfB_IS605	0.92
PF00847	AP2	0.92
PF13651	EcoRI_methylase	0.92
PF00929	RNase_T	0.92
PF11325	DUF3127	0.92
PF12843	QSregVF_b	0.92
PF13481	AAA_25	0.92

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG0305	Replicative DNA helicase	Replication, recombination and repair [L]	8.26
COG0593	Chromosomal replication initiation ATPase DnaA	Replication, recombination and repair [L]	6.42
COG1066	DNA repair protein RadA/Sms, contains AAA+ ATPase domain	Replication, recombination and repair [L]	6.42
COG0863	DNA modification methylase	Replication, recombination and repair [L]	5.50
COG1041	tRNA G10 N-methylase Trm11	Translation, ribosomal structure and biogenesis [J]	5.50
COG2189	Adenine specific DNA methylase Mod	Replication, recombination and repair [L]	5.50
COG0270	DNA-cytosine methylase	Replication, recombination and repair [L]	1.83
COG0616	Periplasmic serine protease, ClpP class	Posttranslational modification, protein turnover, chaperones [O]	1.83
COG0629	Single-stranded DNA-binding protein	Replication, recombination and repair [L]	1.83
COG0740	ATP-dependent protease ClpP, protease subunit	Posttranslational modification, protein turnover, chaperones [O]	1.83
COG2965	Primosomal replication protein N	Replication, recombination and repair [L]	1.83
COG5276	Uncharacterized secreted protein, contains LVIVD repeats, choice-of-anchor domain	Function unknown [S]	0.92
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	0.92
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.92
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.92
COG1030	Membrane-bound serine protease NfeD, ClpP class	Posttranslational modification, protein turnover, chaperones [O]	0.92
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.92

Phylogeny

NCBI Taxonomy

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	100.00 %

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	54.13%
Engineered	Engineered	45.87%

Class

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	32.11%
Aquatic	Environmental → Aquatic	22.02%
Wastewater	Engineered → Wastewater	21.10%
Solid Waste	Engineered → Solid Waste	10.09%
Built Environment	Engineered → Built Environment	7.34%
Biotransformation	Engineered → Biotransformation	3.67%
Bioreactor	Engineered → Bioreactor	2.75%
Unclassified	Engineered → Unclassified	0.92%

Category

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	22.94%
Anaerobic Digestor	Engineered → Wastewater → Anaerobic Digestor	21.10%
Freshwater	Environmental → Aquatic → Freshwater	16.51%
Landfill	Engineered → Solid Waste → Landfill	10.09%
Peat	Environmental → Terrestrial → Peat	8.26%
Water Treatment Plant	Engineered → Built Environment → Water Treatment Plant	7.34%
Mixed Alcohol Bioreactor	Engineered → Biotransformation → Mixed Alcohol Bioreactor	3.67%
Anaerobic	Engineered → Bioreactor → Anaerobic	2.75%
Marine	Environmental → Aquatic → Marine	1.83%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	1.83%
Sediment	Environmental → Aquatic → Sediment	1.83%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	0.92%
Unclassified	Engineered → Unclassified → Unclassified	0.92%

Type

Habitat	Taxonomy	Distribution
Unclassified	Engineered → Wastewater → Anaerobic Digestor → Unclassified	21.10%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	20.18%
Unclassified	Engineered → Solid Waste → Landfill → Unclassified	10.09%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	8.26%
Unclassified	Engineered → Built Environment → Water Treatment Plant → Unclassified	7.34%
Lake	Environmental → Aquatic → Freshwater → Lake	6.42%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	3.67%
Unclassified	Engineered → Biotransformation → Mixed Alcohol Bioreactor → Unclassified	3.67%
Lentic	Environmental → Aquatic → Freshwater → Lentic	2.75%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.75%
Unclassified	Engineered → Bioreactor → Anaerobic → Unclassified	2.75%
Lotic	Environmental → Aquatic → Freshwater → Lotic	1.83%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	1.83%
Coastal	Environmental → Aquatic → Marine → Coastal	1.83%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	1.83%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.83%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	0.92%
Unclassified	Engineered → Unclassified → Unclassified → Unclassified	0.92%

Subtype

Habitat	Taxonomy	Distribution
Unclassified	Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified	21.10%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	11.93%
Unclassified	Engineered → Solid Waste → Landfill → Unclassified → Unclassified	10.09%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	8.26%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	8.26%
Unclassified	Engineered → Built Environment → Water Treatment Plant → Unclassified → Unclassified	7.34%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	3.67%
Unclassified	Engineered → Biotransformation → Mixed Alcohol Bioreactor → Unclassified → Unclassified	3.67%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	2.75%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	2.75%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	2.75%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.75%
Unclassified	Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified	2.75%
Unclassified	Environmental → Aquatic → Freshwater → Lotic → Unclassified	1.83%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	1.83%
Sediment	Environmental → Aquatic → Marine → Coastal → Sediment	1.83%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified	1.83%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.83%
Contaminated	Environmental → Aquatic → Freshwater → Groundwater → Contaminated	0.92%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	0.92%
Unclassified	Engineered → Unclassified → Unclassified → Unclassified → Unclassified	0.92%

Habitat

Habitat	Taxonomy	Distribution
Anaerobic Digestor Sludge	Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge	21.10%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	11.93%
Landfill Leachate	Engineered → Solid Waste → Landfill → Unclassified → Unclassified → Landfill Leachate	9.17%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Agricultural Soil	8.26%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	7.34%
Wastewater	Engineered → Built Environment → Water Treatment Plant → Unclassified → Unclassified → Wastewater	7.34%
Biogas Fermentantion	Engineered → Biotransformation → Mixed Alcohol Bioreactor → Unclassified → Unclassified → Biogas Fermentantion	3.67%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	2.75%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	2.75%
Pond Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Pond Soil	2.75%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	1.83%
Aquatic	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Aquatic	1.83%
Sinkhole Freshwater	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Sinkhole Freshwater	1.83%
Watersheds	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Watersheds	1.83%
Marine Sediment	Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment	1.83%
Saline Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water	1.83%
Anaerobic Biogas Reactor	Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Biogas Reactor	1.83%
Freshwater Lake Hypolimnion	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake Hypolimnion	0.92%
Lake Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Lake Sediment	0.92%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater	0.92%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater	0.92%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.92%
Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment	0.92%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface	0.92%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	0.92%
Biogas Fermenter	Engineered → Solid Waste → Landfill → Unclassified → Unclassified → Biogas Fermenter	0.92%
Biogas Fermenter	Engineered → Unclassified → Unclassified → Unclassified → Unclassified → Biogas Fermenter	0.92%
Anaerobic Digester	Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Digester	0.92%

Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OID	Sample Name	Habitat Type
3300000510	Anaerobic digester microbial communities from Northern Denmark, sample from Foulum manure	Engineered
3300001868	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 11-31A	Environmental
3300001975	Biogas fermenter microbial communities from the University of Hamburg, Germany	Engineered
3300002027	Sinkhole freshwater microbial communities from Lake Huron, USA - Flux 1.5k-5k	Environmental
3300002168	Biogas fermentation microbial communities from Germany - Plant 3 DNA2	Engineered
3300002170	Biogas fermentation microbial communities from Germany - Plant 3 DNA1	Engineered
3300002173	Biogas fermentation microbial communities from Germany - Plant 2 DNA1	Engineered
3300002550	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0004-211	Environmental
3300002839	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 11-31A and 11-33A (Combined assembly, ASSEMBLY_DATE=20140611)	Environmental
3300002898	Metagenome Biopara biogasfermenter May 2013 pooled	Engineered
3300003369	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 002-22A	Environmental
3300003852	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies -HBP12 HB	Environmental
3300005588	Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdDd47.1	Environmental
3300005664	Freshwater viral communities from Emiquon reservoir, Havana, Illinois, USA	Environmental
3300005827	Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.188_CBA	Environmental
3300006801	Agricultural soil microbial communities from Utah to study Nitrogen management - Steer compost 2011	Environmental
3300006950	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost154B-one	Environmental
3300006972	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB136-A	Environmental
3300007535	Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R1_A_D2_MG	Environmental
3300008470	Sediment core microbial communities from Adelie Basin, Antarctica. Combined Assembly of Gp0136540, Gp0136562, Gp0136563	Environmental
3300009039	Lake sediment microbial communities from Lake Baikal, Russia to study Microbial Dark Matter (Phase II) - Lake Baikal sediment 0-5 cm	Environmental
3300009095	Agricultural soil microbial communities from Utah to study Nitrogen management - Steer compost 2015	Environmental
3300009194	Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 RT	Environmental
3300009655	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNTR4_MetaG	Engineered
3300009666	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC077_MetaG	Engineered
3300009667	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNHG3_MetaG	Engineered
3300009670	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC078_MetaG	Engineered
3300009674	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC085_MetaG	Engineered
3300009704	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNHG1_MetaG	Engineered
3300009715	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNAS2_MetaG	Engineered
3300009720	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNAS1_MetaG	Engineered
3300009767	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNAS3_MetaG	Engineered
3300009780	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC045_MetaG	Engineered
3300009783	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC052_MetaG	Engineered
3300010344	AD_JPASca	Engineered
3300010346	AD_USMOca	Engineered
3300010347	AD_JPHGca	Engineered
3300013129 (restricted)	Sediment microbial communities from Lake Kivu, Rwanda - Sediment site 10cm	Environmental
3300013137 (restricted)	Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_11.1m	Environmental
3300013138 (restricted)	Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_022012_12m	Environmental
3300014203	Groundwater microbial communities from an aquifer near a municipal landfill in Southern Ontario, Canada - Pumphouse #3_1 metaG	Environmental
3300014204	Leachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 64-88 metaG	Engineered
3300014205	Leachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 162 metaG	Engineered
3300015214	Leachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 138R metaG	Engineered
3300018405	Freshwater microbial communities from Pennsylvania, USA, analyzing microbe dynamics in response to fracking - TARM_MetaG_T2_14	Environmental
3300018412	Freshwater microbial communities from Pennsylvania, USA, analyzing microbe dynamics in response to fracking - TARM_MetaG_T3A_14	Environmental
3300022555	Alinen_combined assembly	Environmental
3300025524	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB136-A (SPAdes)	Environmental
3300025575	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 11-33A (SPAdes)	Environmental
3300025613	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNTR4_MetaG (SPAdes)	Engineered
3300025677	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNAS2_MetaG (SPAdes)	Engineered
3300025686	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNHG2_MetaG (SPAdes)	Engineered
3300025737	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC078_MetaG (SPAdes)	Engineered
3300025846	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0004-211 (SPAdes)	Environmental
3300025871	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC045_MetaG (SPAdes)	Engineered
3300025891	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost154B-one (SPAdes)	Environmental
3300026156	Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R1_A_D1_MG (SPAdes)	Environmental
3300026157	Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R1_A_D2_MG (SPAdes)	Environmental
3300026290	Anaerobic biogas reactor microbial communites from Washington, USA - Biogas_R1 time_0 SIP DNA (SPAdes)	Engineered
3300026311	Anaerobic biogas reactor microbial communites from Washington, USA - Biogas_R2 time_0 SIP DNA (SPAdes)	Engineered
3300027711	Agricultural soil microbial communities from Utah to study Nitrogen management - Steer compost 2011 (SPAdes)	Environmental
3300027819	Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW37 contaminated, 5.8 m (SPAdes)	Environmental
3300027896	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies -HBP12 HB (SPAdes)	Environmental
3300027899	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - PLP11 PL (SPAdes)	Environmental
3300027980	Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdDd47.1 (SPAdes)	Environmental
3300028178	Saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2011_5_24_36m	Environmental
3300028561 (restricted)	Wastewater microbial communities from Lulu Island WWTP, Vancouver, Canada - plant16	Engineered
3300028567 (restricted)	Wastewater microbial communities from Lulu Island WWTP, Vancouver, Canada - plant14	Engineered
3300028568 (restricted)	Wastewater microbial communities from Lulu Island WWTP, Vancouver, Canada - plant20	Engineered
3300028593 (restricted)	Wastewater microbial communities from Lulu Island WWTP, Vancouver, Canada - plant24	Engineered
3300028603	Leachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 138R	Engineered
3300028677 (restricted)	Wastewater microbial communities from Lulu Island WWTP, Vancouver, Canada - plant22	Engineered
3300028734	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Fen_E2_1	Environmental
3300028738	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_N2_1	Environmental
3300028862	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_N3_1	Environmental
3300029911	III_Bog_N2 coassembly	Environmental
3300030294	II_Fen_E3 coassembly	Environmental
3300031227	Saline water microbial communities from Ace Lake, Antarctica - #232	Environmental
3300031232	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_3	Environmental
3300031521	III_Fen_E2 coassembly	Environmental
3300031726	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_1	Environmental
3300033233	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_bottom	Environmental
3300034112	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Aug2014-rr0191	Environmental

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
Foulum_101729910	3300000510	Anaerobic Digester	MKKEVRQDVYTQAAYAKKVGKTRAWVNQQIKAGNLKILRINGATLIKE*
JGI24146J20443_1000082116	3300001868	Arctic Peat Soil	MPKKEIRHDVATQTEYAKMVGKTPQWVNQQIKAGNLNTLQIKGAVLIKLK*
Draft_111817482	3300001975	Biogas Fermenter	MAVEIYRPLLTKNLTMYDEQRNKTRHLLTQANMTKKIGVSRARVNQMVKNGELKTLTINGATLIKV*
MIS_100678995	3300002027	Sinkhole Freshwater	MKKEIRHDVATQSEYAKMIGVSRARVNQMVKAGEVNVLYVKGAILIKL*
MIS_101495324	3300002027	Sinkhole Freshwater	MKKEIRHDVATQSEYAKMIGVSRARVNQMVKAGEVNTLSVKGAVLIKLN*
JGI24712J26585_100229675	3300002168	Biogas Fermentantion	MMSKEIRHDVYTQAEYAKKIGVSRARVNQMVKNGELKTLTVNGATLIKV*
JGI24711J26586_100430163	3300002170	Biogas Fermentantion	MSKEIRHDVYTQAEYAKKIGVSRARVNQMVKNGELKTLTVNGATLIKV*
JGI24709J26583_101226171	3300002173	Biogas Fermentantion	MKKEVRQDVYTQAAYAKKVGKTRAWVNQQIKAGNLKTLRVNGATLVKE*
JGI24709J26583_101670922	3300002173	Biogas Fermentantion	MKKEIRQDVYTQAAYAKKVGKSRAWVNQQIKAGNLKILRINGATLIKE*
JGI24131J36419_100157178	3300002550	Arctic Peat Soil	MPKKEIRHDVATQTEYAKMVGKTPQWVNQQIKAGNLNTLQIKGAVLVKLK*
JGIcombinedJ43158_1000010250	3300002839	Arctic Peat Soil	MSIQPKEIRKDLYTQAEYAKKVGKTRSWVNLQIKSGSLKTLTVMGTTLVKV*
JGIcombinedJ43158_100021626	3300002839	Arctic Peat Soil	MLKEIRQDIYTQAEYAKLMGKTRSWVNQKIKAGELKTLTIKGATLVKA*
draft_101061433	3300002898	Biogas Fermenter	MKKEIRQDVYTQAAYAKKIGKSRAWVNQQIKAGNIKTLRVNGATLIKE*
JGI24140J50213_100881152	3300003369	Arctic Peat Soil	MLNSVKEIRQDLFTQSEYAKKVGKTRAWVNQQIKAGNLKVLHVKGAVLIKL*
Ga0031655_100342492	3300003852	Freshwater Lake Sediment	MIKEIRHDLYTQVEYAKLVGKTPAWVNQQIKAGNLKTLTVKGGILIKV*
Ga0070728_101264142	3300005588	Marine Sediment	MVKEIRKDLFTQAEWAKKICKSRAWVNQQIKAGNIKTVTINGAVLVKQ*
Ga0073685_10645074	3300005664	Aquatic	MSKEIRKDVYTQAEYGKLVGKTRAWVNQQIKAGNLKTLSVNGAILVKM*
Ga0073685_11179591	3300005664	Aquatic	MSKEIRHDVYTQAEYAKKIGVSRARVNQMTKNGELKTLTINGATLIKV*
Ga0074478_11473794	3300005827	Sediment (Intertidal)	MIKKEIRQDVYTQKKYAELVGKTPAWVNQQIKAGNLKTLIVQGAVLVKL*
Ga0079223_103763812	3300006801	Agricultural Soil	MKKEIRQDVYTQAAYAKKIGKSRAWVNQQIKAGNIKTLRINGATLIKE*
Ga0079223_107043421	3300006801	Agricultural Soil	MKKEIRQDVYTQAAYAKKIGKSRAWVNQQIKAGNIKTLLVNGATLIKE*
Ga0075524_1000000476	3300006950	Arctic Peat Soil	MPVKEIRQDVATQTEYAKMVGKTPQWVNQQIKAGNLSTLHIKGAILVKLK*
Ga0075518_10170424	3300006972	Arctic Peat Soil	MPVKEIRQDVATQTEYAKMVGKTPQWVNQQIKAGNLSTLHIKGAILVKIK*
Ga0102926_11130362	3300007535	Pond Soil	MYKKEIRKDLYTQAEYAKKIGKHRSWVNQQIKLGNIKTVTINGAILVKA*
Ga0115371_113180881	3300008470	Sediment	MVNIKEIRQDVYTQAEYAKKIGKSRAWVNQQIKAGNLKTLTIKGATLVKLK
Ga0105152_101727312	3300009039	Lake Sediment	MPKKEIRQDVATQSEYAKMVGKTPQWVNQQIKLGNISTLHVKGAVLVKLQ*
Ga0079224_1001731352	3300009095	Agricultural Soil	MKKEVRQDVYTQAAYAKKVGKTRAWVNQQIKAGNLKILRINGATLVKE*
Ga0079224_1002948074	3300009095	Agricultural Soil	MKEIRKDLFTQAEYAKKVGLTPARINQMVKKGELKTVRINGATLIKV*
Ga0079224_1019467633	3300009095	Agricultural Soil	MLTMKKEIRQDLFTQAQYAVRIGVSRARVNQMIKNGELNTVTINGATLVKI*
Ga0079224_1035136971	3300009095	Agricultural Soil	MKEIRRDLFTQAEYAKKVGLTPARINQMVKKGELKTITINGATLIKV*
Ga0079224_1039985822	3300009095	Agricultural Soil	MKKEIRQDLFTQAQYAVRIGVSRARVNQMIKNGELSTVTINGATLVKI*
Ga0114983_10074753	3300009194	Deep Subsurface	MLKEIRKDIFTQAEYAKKVGKSRAWVNQQIKSGNLKTLTVNGAVLVKI*
Ga0116190_10230141	3300009655	Anaerobic Digestor Sludge	MKSKEIRYDIYTQAEYAKKIGVSRARVNQMAKNGELKTLTINGATLIKV*
Ga0116182_14402112	3300009666	Anaerobic Digestor Sludge	MSKERRHDIYTQAEYAKKIGVSRARVNQMAKNGELKTLTINGATLIKV*
Ga0116147_11297981	3300009667	Anaerobic Digestor Sludge	MYMSKEIRHDIYTQAEYAKKIGVSRARVNQMTKNGELKTLTINGATLIKV*
Ga0116183_11338061	3300009670	Anaerobic Digestor Sludge	MMSKERRHDIYTQAEYAKKIGVSRARVNQMAKNGELKTLTINGATLIKV*
Ga0116183_13068171	3300009670	Anaerobic Digestor Sludge	MSKEIRHDIYTQAEYAKKIGVSRARVNQMAKNGELKTLTINGATLIKV*
Ga0116173_11669411	3300009674	Anaerobic Digestor Sludge	NLTMHMSKEIRHDIYTQAEYAKKIGVSRARVNQMAKNGELKTLTINGATLIKV*
Ga0116145_10249453	3300009704	Anaerobic Digestor Sludge	MSKEIRHDIYTQAEYAKKIGVSRARVNQMTKNGELKTLTINGATLIKV*
Ga0116160_10145621	3300009715	Anaerobic Digestor Sludge	EIRYDIYTQAEYAKKIGVSRARVNQMAKNGELKTLTINGATLIKV*
Ga0116159_10417113	3300009720	Anaerobic Digestor Sludge	MIKEIRQDLYTQSEYAKLKGITRARVNQLVKSGDLQTLTINGATLIKV*
Ga0116161_12415691	3300009767	Anaerobic Digestor Sludge	DIYTQAEYAKKIGVSRARVNQMAKNGELKTLTINGATLIKV*
Ga0116156_100417575	3300009780	Anaerobic Digestor Sludge	MSKEIRQDVYTQSEYSKKVGKTRAWVNQQVKAGNLKTLTVNGAVLIKV*
Ga0116156_100966572	3300009780	Anaerobic Digestor Sludge	MMSKEIRHDIYTQAEYAKKIGVSRARVNQMVKNGELKTLTINGATLIKA*
Ga0116158_101136992	3300009783	Anaerobic Digestor Sludge	MSKEIRHDIYTQAEYAKKIGVSRARVNQMVKNGELKTLTINGATLIKA*
Ga0116243_101007591	3300010344	Anaerobic Digestor Sludge	KSKEIRYDIYTQAEYAKKIGVSRARVNQMAKNGELKTLTINGATLIKV*
Ga0116243_103863022	3300010344	Anaerobic Digestor Sludge	MNKEIRHDVYTQAEYAKKIGVSRARVNQMTKNGELKTLTINGATLIKV*
Ga0116239_103577153	3300010346	Anaerobic Digestor Sludge	MSKEIRHDIYTQAEYAKKIGVSRARVNQMVKNGELKTLTINGATLIKV*
Ga0116238_100370057	3300010347	Anaerobic Digestor Sludge	YAKKIGVSRARVNQMAKNGELKTLTINGATLIKV*
(restricted) Ga0172364_107215602	3300013129	Sediment	MTKEIRQDIYTQSEYAKLIGITRARVNQMVKAGELKTLTIKGATLIKV*
(restricted) Ga0172375_100714704	3300013137	Freshwater	MTKEIRQDVYTQAEYAKMIGVTRARVNQMIKEGEVKILKVQGATLIKV*
(restricted) Ga0172371_101089772	3300013138	Freshwater	MTKEIRQDVYTQAEYAKMIGVTRARVNQMIKAGEVKILKVQGATLIKV*
Ga0172378_101516095	3300014203	Groundwater	MKEIRRDLFTQAEYAKKVGLTPARINQMVKKGELKTIKINGATLIKV*
Ga0172381_1000070767	3300014204	Landfill Leachate	MTETKREIRQDIFTQAEYARRVRKTRAWVNQQIKEGNLRTLTVNGATLIKA*
Ga0172381_1000244824	3300014204	Landfill Leachate	MSIKEIRQDIFTQSAYAKHVGKTRAWVNQQVKAGNLKILKINGTILIKK*
Ga0172381_1000252218	3300014204	Landfill Leachate	MSKEIREDLYTQAEYAKKVGKTRAWVNQQIKAGNIKTLTVKGATLVKA*
Ga0172381_100331233	3300014204	Landfill Leachate	MSKEIRQDLFTQAEYAKKVKKTRAWVNQQVKSGKLKTLIINGATLVKA*
Ga0172381_100368215	3300014204	Landfill Leachate	MVKEIRQDIYTQAEYARKIRKTRTWVNQQIKAGNLKTLTVNGAILIKV*
Ga0172381_104286562	3300014204	Landfill Leachate	MVKEVRQDVYTQTEYAKKIGKTKAWVNQQIKAGNLKTLSVKGATLVKV*
Ga0172380_1000246733	3300014205	Landfill Leachate	MSSRFLGIKKLTMLKEIRKDLYTQAEYARLVHKSRAWVNQKIMSGDLRTVNINGATLVKI
Ga0172380_101044794	3300014205	Landfill Leachate	MAETKEIRQDVYTQAEYARKIGKTRAWVNQQIKEGNLRTLSVKGAILVKV*
Ga0172382_103415041	3300015214	Landfill Leachate	MKKEIRQDLYTQAAYAKKIGKSRAWVNQQIKAGNLKTLRINGATLVKE*
Ga0194138_102619172	3300018405	Watersheds	MLKEIRKDIFTQAEYAKKVGKSRAWVNQQIKSGNLKTLTVNGAVLVKI
Ga0194136_11861842	3300018412	Watersheds	MLKEIRKDIFTQAEYAKKVCKSRAWVNQQIKSGNLKTLTVNGAVLVKI
Ga0212088_100240594	3300022555	Freshwater Lake Hypolimnion	MLKEIRQDIYTQAEYAKLMGKTRSWVNQKIKAGELKTLTIKGATLVKA
Ga0209817_10057495	3300025524	Arctic Peat Soil	MPVKEIRQDVATQTEYAKMVGKTPQWVNQQIKAGNLSTLHIKGAILVKIK
Ga0209430_100018867	3300025575	Arctic Peat Soil	MSIQPKEIRKDLYTQAEYAKKVGKTRSWVNLQIKSGSLKTLTVMGTTLVKV
Ga0209430_100036941	3300025575	Arctic Peat Soil	MPKKEIRHDVATQTEYAKMVGKTPQWVNQQIKAGNLNTLQIKGAVLIKLK
Ga0208461_10232551	3300025613	Anaerobic Digestor Sludge	MKSKEIRYDIYTQAEYAKKIGVSRARVNQMAKNGELKTLTINGATLIKV
Ga0209719_10297201	3300025677	Anaerobic Digestor Sludge	IRYDIYTQAEYAKKIGVSRARVNQMAKNGELKTLTINGATLIKV
Ga0209506_12195142	3300025686	Anaerobic Digestor Sludge	YDIYTQAEYAKKIGVSRARVNQMAKNGELKTLTINGATLIKV
Ga0208694_10992634	3300025737	Anaerobic Digestor Sludge	MMSKERRHDIYTQAEYAKKIGVSRARVNQMAKNGELKTLTINGATLIKV
Ga0209538_10040281	3300025846	Arctic Peat Soil	PKKEIRHDVATQTEYAKMVGKTPQWVNQQIKAGNLNTLQIKGAVLIKLK
Ga0209538_101267512	3300025846	Arctic Peat Soil	MPKKEIRHDVATQTEYAKMVGKTPQWVNQQIKAGNLNTLQIKGAVLVKLK
Ga0209311_10563384	3300025871	Anaerobic Digestor Sludge	MSKEIRQDVYTQSEYSKKVGKTRAWVNQQVKAGNLKTLTVNGAVLIKV
Ga0209311_10576934	3300025871	Anaerobic Digestor Sludge	MMSKEIRHDIYTQAEYAKKIGVSRARVNQMVKNGELKTLTINGATLIKA
Ga0209585_1000002435	3300025891	Arctic Peat Soil	MPVKEIRQDVATQTEYAKMVGKTPQWVNQQIKAGNLSTLHIKGAILVKLK
Ga0209936_11811612	3300026156	Pond Soil	KEIRKDLYTQAEYAKKIGKHRSWVNQQIKLGNIKTVTINGAILVKA
Ga0209942_10198511	3300026157	Pond Soil	MYKKEIRKDLYTQAEYAKKIGKHRSWVNQQIKLGNIKTVTINGAILVKA
Ga0209510_10238242	3300026290	Anaerobic Biogas Reactor	MKKEIRQDLYTQAAYAKKIGKSRAWVNQQIKAGNLKILRINGATLIKE
Ga0209723_10656003	3300026311	Anaerobic Biogas Reactor	MMSKEIRHDIYTQAEYAKKIGVSRARVNQMAKNGELKTLTINGATLIKV
Ga0209075_10146767	3300027711	Agricultural Soil	MKKEIRQDVYTQAAYAKKIGKSRAWVNQQIKAGNIKTLRINGATLIKE
Ga0209075_10474863	3300027711	Agricultural Soil	MKKEIRQDVYTQAAYAKKIGKSRAWVNQQIKAGNIKTLRVNGATLIKE
Ga0209514_1000837910	3300027819	Groundwater	MSIKEIRQDIFTQSAYAKHVGKTRAWVNQQVKAGNLKILKINGTILIKA
Ga0209777_100064129	3300027896	Freshwater Lake Sediment	MIKEIRHDLYTQVEYAKLVGKTPAWVNQQIKAGNLKTLTVKGGILIKV
Ga0209668_102589092	3300027899	Freshwater Lake Sediment	MAKKEIRQDVATQAEYAKMVGKTRAWVNQQIKLGKLSTLHIKGAVLIKLEQKEI
Ga0209475_101187653	3300027980	Marine Sediment	MVKEIRKDLFTQAEWAKKICKSRAWVNQQIKAGNIKTVTINGAVLVKQ
Ga0265593_10836114	3300028178	Saline Water	LDFEFKIVNMAKKEIRQDVATQVEYARIIGKSAAWVNQQIKAGNINTLHVKGAVLVKLK
(restricted) Ga0255343_13394672	3300028561	Wastewater	MHMSKEIRHDIYTQAEYAKKIGVSRARVNQMAKNGELKTLTINGATLIKV
(restricted) Ga0255342_10801491	3300028567	Wastewater	MNKEIRHDIYTQAEYAKKIGVSRARVNQMAKNGELKTLTINGAT
(restricted) Ga0255342_11240923	3300028567	Wastewater	KKLTMYMSKEIRHDIYTQAEYAKKIGVSRARVNQMAKNGELKTLTINGATLIKV
(restricted) Ga0255345_12253752	3300028568	Wastewater	MSKEIRHDIYTQAEYAKKIGVSRARVNQMAKNGELKTLTINGATLIKA
(restricted) Ga0255347_10019462	3300028593	Wastewater	MSKEIRRDIYTQAEYAKKIGVSRARVNQMTKNGELKTLTINGATLIKV
(restricted) Ga0255347_11126482	3300028593	Wastewater	MSKEIRHDIYTQAEYAKKIGVSRARVNQMAKNGELKTLTINGATLIKV
(restricted) Ga0255347_12735302	3300028593	Wastewater	SKEIRHDIYTQAEYAKKIGVSRARVNQMAKNGELKTLTINGATLIKA
Ga0265293_101610984	3300028603	Landfill Leachate	MKKEIRQDLYTQAAYAKKIGKSRAWVNQQIKAGNLKTLRINGATLVKE
(restricted) Ga0255346_11940242	3300028677	Wastewater	MHMSKEIRHDIYTQAEYAKKIGVSRARVNQMAKNGELKTLTINGATLIKA
Ga0302206_10708672	3300028734	Fen	MIKEIRQDLYTQAEYAKLVHKSAAWVNQQIKANNLKTLTVNGAILVKI
Ga0302292_12377692	3300028738	Fen	MSKKEIRQDVATQTEYAKLVGKTPQWVNQQIKAGNLSTLHIKGAILVKIK
Ga0302296_11425632	3300028862	Fen	MLKEIRQDLITQAEYAKMVGKTRSWVNQQIKAGNLKVLHVKGTVLIKL
Ga0311361_104169763	3300029911	Bog	MAKKEIRKDVMTQAAYAVKVGKTRAWVNQQIKAGNIDTLHIEGAILVKLN
Ga0311349_104734431	3300030294	Fen	MSKEIRHDLYTQAEYAKLVGKTRSWVCLQVKDGKLKTLTVKGAILVKI
Ga0311349_117088952	3300030294	Fen	MIKEIRQDLYTQAEYAKLVHKSAAWVNQQIKANNLKTLTVNGA
Ga0307928_100407392	3300031227	Saline Water	MIKEIRKDLFTQADWAKKVGKSRAWVNQQIKAGNIKTVTINGAILVKL
Ga0302323_1034755012	3300031232	Fen	MIKEIRQDLYTQSEYAKLVHKSAAWVNQQIKANNLKTLTVNGAILVKV
Ga0311364_106386532	3300031521	Fen	MIKEIRQDLYTQAEYAKLVHKSAAWVNQQIKANNLKTLTVNGAILVKV
Ga0302321_1001297381	3300031726	Fen	RQDLYTQSEYAKLVHKSAAWVNQQIKANNLKTLTVNGAILVKV
Ga0334722_110463162	3300033233	Sediment	MKEARKDVYTQAAYAKKVGKTRAWVNQQVKAGNLQTLIINGAILVKEKN
Ga0335066_0251888_152_298	3300034112	Freshwater	MTKEIRQDIYTQSEFAKLKGITRARVNQMVKAGELRTLTVKGATLIKV