3300017649: Enriched Organic Plus compost microbial communities from Emeryville, California, USA - eDNA 5th pass 37_C BE-Lig OP (version 2)

Overview

Basic Information

• IMG/M Taxon OID: 3300017649
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127392 | Gp0191739 | Ga0182741
• Sample Name: Enriched Organic Plus compost microbial communities from Emeryville, California, USA - eDNA 5th pass 37_C BE-Lig OP (version 2)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 511004168
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Lignin-Adapted Enriched Soil Microbial Communities From Emeryville, California, Usa
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Compost → Lignin-Adapted Enriched Soil Microbial Communities From Emeryville, California, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → anthropogenic environment → compost
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: USA: Emeryville, California
• Coordinates
  • Lat. (^o): 37.83
  • Long. (^o): -122.29
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007999	Metagenome	341	Y
F011188	Metagenome / Metatranscriptome	294	Y
F036417	Metagenome / Metatranscriptome	170	Y
F056036	Metagenome	138	Y
F081015	Metagenome / Metatranscriptome	114	Y
F098955	Metagenome / Metatranscriptome	103	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0182741_1000391	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	67349
Ga0182741_1000656	All Organisms → cellular organisms → Bacteria	49707
Ga0182741_1002645	All Organisms → cellular organisms → Bacteria	20426
Ga0182741_1040782	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	1936
Ga0182741_1139314	All Organisms → cellular organisms → Bacteria → Proteobacteria	674
Ga0182741_1185571	All Organisms → cellular organisms → Bacteria	529

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0182741_1000391	Ga0182741_10003917	F011188	VDTYNIYMDEMPTGEEYDGEEMVEVEFRVVPGSDDDGDPETNAVIAGLDLVDLINLRDALQQEIDDYALAALESEALRLAEAE
Ga0182741_1000656	Ga0182741_100065638	F007999	MHDNLPMTPWQRGEKARENLVNALRECGELADAVAAFQGPELLEVLDYLDSLRFVMAESGQILQGVVRGQQ
Ga0182741_1002645	Ga0182741_10026453	F036417	MVYYARTPLRRLIPTVLVRLATDEGEVTFRARWRHTPIELQRMIMFRLRRGHPLWFEDDRGRDLCFKPEAVWAAVVDGR
Ga0182741_1040782	Ga0182741_10407822	F081015	MTTIHADELQVGDVVEHLGARHLVRHVDRRAGWAWPVAFDDAGWAMALGHDLVVEVARPDDA
Ga0182741_1139314	Ga0182741_11393141	F056036	VSARLKRELGAGVAVALLALGGAYWQAERTNAFEADTRTGETLRLV
Ga0182741_1185571	Ga0182741_11855712	F098955	EQEVELDVALLINGLPNMLASTAFPLDDSWERIQAALDSGDARLAVAGMPYETTSASGRAETFPSAYVGMECANGERLVLAHIKGVDAEQQAEAYAREVINAILDGNSPVDLGETIED