3300017315: Metatranscriptome of marine eukaryotic communities from Mediterranean Sea in K/2 medium, 17 C, 35 psu salinity and 672 ?mol photons light - Scyphosphaera apsteinii RCC 1455 (MMETSP1333)

Overview

Basic Information

• IMG/M Taxon OID: 3300017315
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128947 | Gp0212102 | Ga0186390
• Sample Name: Metatranscriptome of marine eukaryotic communities from Mediterranean Sea in K/2 medium, 17 C, 35 psu salinity and 672 ?mol photons light - Scyphosphaera apsteinii RCC 1455 (MMETSP1333)
• Sequencing Status: Permanent Draft
• Sequencing Center: National Center for Genome Resources
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 40252843
• Sequencing Scaffolds: 6
• Novel Protein Genes: 8
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	1
All Organisms → cellular organisms → Eukaryota → Haptista	2
Not Available	1
All Organisms → cellular organisms → Eukaryota → Discoba → Heterolobosea → Tetramitia → Eutetramitia → Vahlkampfiidae → Naegleria → Naegleria gruberi	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Mediterranean Sea
• Coordinates
  • Lat. (^o): 41.39
  • Long. (^o): 2.48
  • Alt. (m): N/A
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006207	Metagenome / Metatranscriptome	378	Y
F012191	Metagenome / Metatranscriptome	282	Y
F015559	Metagenome / Metatranscriptome	253	Y
F022280	Metagenome / Metatranscriptome	215	Y
F024007	Metagenome / Metatranscriptome	207	Y
F024700	Metagenome / Metatranscriptome	204	Y
F049399	Metagenome / Metatranscriptome	146	Y
F080844	Metagenome / Metatranscriptome	114	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0186390_108978	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi	1315
Ga0186390_113011	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	1066
Ga0186390_118175	All Organisms → cellular organisms → Eukaryota → Haptista	811
Ga0186390_120412	Not Available	715
Ga0186390_121011	All Organisms → cellular organisms → Eukaryota → Haptista	691
Ga0186390_121595	All Organisms → cellular organisms → Eukaryota → Discoba → Heterolobosea → Tetramitia → Eutetramitia → Vahlkampfiidae → Naegleria → Naegleria gruberi	668

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186390_108978	Ga0186390_1089781	F049399	VLSFSEIPAEFAEFVKAKQQELAFNMLSSSAAGVVLANLAALVAGDASVELLIQTSQAQIPLLILTLIASVLSGKVENKPW
Ga0186390_113011	Ga0186390_1130111	F015559	KVPLFVATTISAMAYKLGTSTKAGDDFPNVFVDIGFAGLDAANRKQTGDLNQGKKTLWVSLPGAFTPT
Ga0186390_118175	Ga0186390_1181751	F006207	KKESVMQLHDRKGKHGAPVTCGDWLVDNRIGLASGSRVKISKPLSADGAQWESQCKFKLSGAMSRVPRKFKGAGAPKLLSFSLQHPMYVAVCVGDNYMLVFGTRESTHSKEDLGLTFPEDYGPITGFQWLEDDVVLVALSNGYVTNVDFGAMVRMRQAQGLPECIKATGTTKVFNEYLSCLRYSTASRRIAVCGDNGFKVIRRTKHELEVLIDVSLEYTLTIGNCIDQVQWDHEGKSLCVTATNGFLWAYDIVEIS
Ga0186390_120412	Ga0186390_1204121	F012191	SSGYSLQPVNSLSMSITRVSALAQLSQRFASRGMGAGMGGGGHANNPVFMFQADWAKKKYKGAIFVGSVTFLGVFVPSYCISFAQKKAGVEW
Ga0186390_121011	Ga0186390_1210111	F024007	MAHRGVSVPEKNDGGIVVALVLLIAMLCTVFFSAIVLYASADIAITKDQKEKTVRARRIARLLSGWANIGNAVVHALLIVMLVSDTKRFKVFFPDEAEMPAGPIGLLVLNALVGLKSLKGGGIILALGWNSFIALAGSFIPIVWPKFIDVGIATWPYLAIFLWLGIYAFESAAFFFSVVAFTLKDAHVVKED
Ga0186390_121595	Ga0186390_1215951	F024700	PLSSAFERESRHLNMTKPSKRAAQGVYADMELTGVISTLESHWIVLDAELSEIRKDFNSLRVLSRKYGDYWSRSMAQLKKLRAQKENLLKEIKFQMELFNLHIQQGRDMCAKLSTMASVIKSAPSQQQTQLAIEVVSPILANSQNPLTVSHP
Ga0186390_122026	Ga0186390_1220261	F080844	DSMSQQPQIEPAHAPRYMVGAVTTRLTVTVPPGIVGGELVRVAAPDGSYHSVMVPAGLAAGQQFSVELLAGAAEGNAMELAKLKVELEAEKHLRRETQQEALRSRSALEALHQKRRADHAFVRDMIKRQRRCIEHLTKQLECS
Ga0186390_122038	Ga0186390_1220381	F022280	DCAKTNKSAAQCADVLVGNAVPNIFKIVDAVHEASPAARVTGFGYDTMFGGLGCSLLTHDVFPQCWSKITPLGGDNDDDDGNRXXXXCFNTQFLRIQKGWDWIAGNRSFVDPVSILGATQVAAGDTKASTDPADRHIDMEKMGPAKYWPDYLACFHPGILPQDSDDIGAMVVMEEFYKVYWKNQPSVCRADRSYNAQA