Sample 3300017315

Overview

Basic Information
IMG/M Taxon OID	3300017315 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0128947 \| Gp0212102 \| Ga0186390
Sample Name	Metatranscriptome of marine eukaryotic communities from Mediterranean Sea in K/2 medium, 17 C, 35 psu salinity and 672 ?mol photons light - Scyphosphaera apsteinii RCC 1455 (MMETSP1333)
Sequencing Status	Permanent Draft
Sequencing Center	National Center for Genome Resources
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	40252843
Sequencing Scaffolds	6
Novel Protein Genes	8
Associated Families	8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	1
All Organisms → cellular organisms → Eukaryota → Haptista	2
Not Available	1
All Organisms → cellular organisms → Eukaryota → Discoba → Heterolobosea → Tetramitia → Eutetramitia → Vahlkampfiidae → Naegleria → Naegleria gruberi	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	Mediterranean Sea
Coordinates	Lat. (^o)	41.39	Long. (^o)	2.48	Alt. (m)	N/A	Depth (m)	5
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F006207	Metagenome / Metatranscriptome	378	Y
F012191	Metagenome / Metatranscriptome	282	Y
F015559	Metagenome / Metatranscriptome	253	Y
F022280	Metagenome / Metatranscriptome	215	Y
F024007	Metagenome / Metatranscriptome	207	Y
F024700	Metagenome / Metatranscriptome	204	Y
F049399	Metagenome / Metatranscriptome	146	Y
F080844	Metagenome / Metatranscriptome	114	N

Scaffold	Taxonomy	Length	IMG/M Link
Ga0186390_108978	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi	1315	Open in IMG/M
Ga0186390_113011	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	1066	Open in IMG/M
Ga0186390_118175	All Organisms → cellular organisms → Eukaryota → Haptista	811	Open in IMG/M
Ga0186390_120412	Not Available	715	Open in IMG/M
Ga0186390_121011	All Organisms → cellular organisms → Eukaryota → Haptista	691	Open in IMG/M
Ga0186390_121595	All Organisms → cellular organisms → Eukaryota → Discoba → Heterolobosea → Tetramitia → Eutetramitia → Vahlkampfiidae → Naegleria → Naegleria gruberi	668	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0186390_108978

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi

1315

Open in IMG/M

Ga0186390_113011

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii

1066

Open in IMG/M

Ga0186390_118175

All Organisms → cellular organisms → Eukaryota → Haptista

811

Open in IMG/M

Ga0186390_120412

Not Available

715

Open in IMG/M

Ga0186390_121011

All Organisms → cellular organisms → Eukaryota → Haptista

691

Open in IMG/M

Ga0186390_121595

All Organisms → cellular organisms → Eukaryota → Discoba → Heterolobosea → Tetramitia → Eutetramitia → Vahlkampfiidae → Naegleria → Naegleria gruberi

668

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0186390_108978	Ga0186390_1089781	F049399	VLSFSEIPAEFAEFVKAKQQELAFNMLSSSAAGVVLANLAALVAGDASVELLIQTSQAQIPLLILTLIASVLSGKVENKPW
Ga0186390_113011	Ga0186390_1130111	F015559	KVPLFVATTISAMAYKLGTSTKAGDDFPNVFVDIGFAGLDAANRKQTGDLNQGKKTLWVSLPGAFTPT
Ga0186390_118175	Ga0186390_1181751	F006207	KKESVMQLHDRKGKHGAPVTCGDWLVDNRIGLASGSRVKISKPLSADGAQWESQCKFKLSGAMSRVPRKFKGAGAPKLLSFSLQHPMYVAVCVGDNYMLVFGTRESTHSKEDLGLTFPEDYGPITGFQWLEDDVVLVALSNGYVTNVDFGAMVRMRQAQGLPECIKATGTTKVFNEYLSCLRYSTASRRIAVCGDNGFKVIRRTKHELEVLIDVSLEYTLTIGNCIDQVQWDHEGKSLCVTATNGFLWAYDIVEIS
Ga0186390_120412	Ga0186390_1204121	F012191	SSGYSLQPVNSLSMSITRVSALAQLSQRFASRGMGAGMGGGGHANNPVFMFQADWAKKKYKGAIFVGSVTFLGVFVPSYCISFAQKKAGVEW
Ga0186390_121011	Ga0186390_1210111	F024007	MAHRGVSVPEKNDGGIVVALVLLIAMLCTVFFSAIVLYASADIAITKDQKEKTVRARRIARLLSGWANIGNAVVHALLIVMLVSDTKRFKVFFPDEAEMPAGPIGLLVLNALVGLKSLKGGGIILALGWNSFIALAGSFIPIVWPKFIDVGIATWPYLAIFLWLGIYAFESAAFFFSVVAFTLKDAHVVKED
Ga0186390_121595	Ga0186390_1215951	F024700	PLSSAFERESRHLNMTKPSKRAAQGVYADMELTGVISTLESHWIVLDAELSEIRKDFNSLRVLSRKYGDYWSRSMAQLKKLRAQKENLLKEIKFQMELFNLHIQQGRDMCAKLSTMASVIKSAPSQQQTQLAIEVVSPILANSQNPLTVSHP
Ga0186390_122026	Ga0186390_1220261	F080844	DSMSQQPQIEPAHAPRYMVGAVTTRLTVTVPPGIVGGELVRVAAPDGSYHSVMVPAGLAAGQQFSVELLAGAAEGNAMELAKLKVELEAEKHLRRETQQEALRSRSALEALHQKRRADHAFVRDMIKRQRRCIEHLTKQLECS
Ga0186390_122038	Ga0186390_1220381	F022280	DCAKTNKSAAQCADVLVGNAVPNIFKIVDAVHEASPAARVTGFGYDTMFGGLGCSLLTHDVFPQCWSKITPLGGDNDDDDGNRXXXXCFNTQFLRIQKGWDWIAGNRSFVDPVSILGATQVAAGDTKASTDPADRHIDMEKMGPAKYWPDYLACFHPGILPQDSDDIGAMVVMEEFYKVYWKNQPSVCRADRSYNAQA

Scaffold ID

Protein ID

Family

Sequence

Ga0186390_108978

Ga0186390_1089781

F049399

VLSFSEIPAEFAEFVKAKQQELAFNMLSSSAAGVVLANLAALVAGDASVELLIQTSQAQIPLLILTLIASVLSGKVENKPW

Ga0186390_113011

Ga0186390_1130111

F015559

KVPLFVATTISAMAYKLGTSTKAGDDFPNVFVDIGFAGLDAANRKQTGDLNQGKKTLWVSLPGAFTPT

Ga0186390_118175

Ga0186390_1181751

F006207

KKESVMQLHDRKGKHGAPVTCGDWLVDNRIGLASGSRVKISKPLSADGAQWESQCKFKLSGAMSRVPRKFKGAGAPKLLSFSLQHPMYVAVCVGDNYMLVFGTRESTHSKEDLGLTFPEDYGPITGFQWLEDDVVLVALSNGYVTNVDFGAMVRMRQAQGLPECIKATGTTKVFNEYLSCLRYSTASRRIAVCGDNGFKVIRRTKHELEVLIDVSLEYTLTIGNCIDQVQWDHEGKSLCVTATNGFLWAYDIVEIS

Ga0186390_120412

Ga0186390_1204121

F012191

SSGYSLQPVNSLSMSITRVSALAQLSQRFASRGMGAGMGGGGHANNPVFMFQADWAKKKYKGAIFVGSVTFLGVFVPSYCISFAQKKAGVEW

Ga0186390_121011

Ga0186390_1210111

F024007

MAHRGVSVPEKNDGGIVVALVLLIAMLCTVFFSAIVLYASADIAITKDQKEKTVRARRIARLLSGWANIGNAVVHALLIVMLVSDTKRFKVFFPDEAEMPAGPIGLLVLNALVGLKSLKGGGIILALGWNSFIALAGSFIPIVWPKFIDVGIATWPYLAIFLWLGIYAFESAAFFFSVVAFTLKDAHVVKED

Ga0186390_121595

Ga0186390_1215951

F024700

PLSSAFERESRHLNMTKPSKRAAQGVYADMELTGVISTLESHWIVLDAELSEIRKDFNSLRVLSRKYGDYWSRSMAQLKKLRAQKENLLKEIKFQMELFNLHIQQGRDMCAKLSTMASVIKSAPSQQQTQLAIEVVSPILANSQNPLTVSHP

Ga0186390_122026

Ga0186390_1220261

F080844

DSMSQQPQIEPAHAPRYMVGAVTTRLTVTVPPGIVGGELVRVAAPDGSYHSVMVPAGLAAGQQFSVELLAGAAEGNAMELAKLKVELEAEKHLRRETQQEALRSRSALEALHQKRRADHAFVRDMIKRQRRCIEHLTKQLECS

Ga0186390_122038

Ga0186390_1220381

F022280

DCAKTNKSAAQCADVLVGNAVPNIFKIVDAVHEASPAARVTGFGYDTMFGGLGCSLLTHDVFPQCWSKITPLGGDNDDDDGNRXXXXCFNTQFLRIQKGWDWIAGNRSFVDPVSILGATQVAAGDTKASTDPADRHIDMEKMGPAKYWPDYLACFHPGILPQDSDDIGAMVVMEEFYKVYWKNQPSVCRADRSYNAQA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300017315: Metatranscriptome of marine eukaryotic communities from Mediterranean Sea in K/2 medium, 17 C, 35 psu salinity and 672 ?mol photons light - Scyphosphaera apsteinii RCC 1455 (MMETSP1333)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences