3300017238: Metatranscriptome of marine eukaryotic communities from unknown location in Brackish water medium, at 19 C, 5 psu salinity and 389 ?mol photons light - Pseudokeronopsis sp. Brazil (MMETSP1396)

Overview

Basic Information

• IMG/M Taxon OID: 3300017238
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128947 | Gp0211909 | Ga0186197
• Sample Name: Metatranscriptome of marine eukaryotic communities from unknown location in Brackish water medium, at 19 C, 5 psu salinity and 389 ?mol photons light - Pseudokeronopsis sp. Brazil (MMETSP1396)
• Sequencing Status: Permanent Draft
• Sequencing Center: National Center for Genome Resources
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 28984345
• Sequencing Scaffolds: 11
• Novel Protein Genes: 11
• Associated Families: 11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida → Oxytrichidae	4
Not Available	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Hypotrichia → Euplotida → Euplotidae → Moneuplotes → Moneuplotes crassus	1
All Organisms → cellular organisms → Eukaryota	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	3
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea → Peniculida → Parameciidae → Paramecium → Paramecium tetraurelia	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009809	Metagenome / Metatranscriptome	312	Y
F015657	Metagenome / Metatranscriptome	253	Y
F019022	Metagenome / Metatranscriptome	232	Y
F034341	Metagenome / Metatranscriptome	175	Y
F037232	Metagenome / Metatranscriptome	168	Y
F038410	Metagenome / Metatranscriptome	166	Y
F051179	Metagenome / Metatranscriptome	144	Y
F052624	Metagenome / Metatranscriptome	142	Y
F067779	Metagenome / Metatranscriptome	125	Y
F071293	Metagenome / Metatranscriptome	122	Y
F080515	Metagenome / Metatranscriptome	115	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0186197_102873	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida → Oxytrichidae	1838
Ga0186197_106709	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida → Oxytrichidae	1273
Ga0186197_110643	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida → Oxytrichidae	944
Ga0186197_113718	Not Available	764
Ga0186197_114148	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Hypotrichia → Euplotida → Euplotidae → Moneuplotes → Moneuplotes crassus	742
Ga0186197_114338	All Organisms → cellular organisms → Eukaryota	733
Ga0186197_114467	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	727
Ga0186197_116151	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida → Oxytrichidae	649
Ga0186197_116364	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	639
Ga0186197_117573	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	585
Ga0186197_119395	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea → Peniculida → Parameciidae → Paramecium → Paramecium tetraurelia	515

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186197_102873	Ga0186197_1028732	F034341	MDIYTDDMTFNTFYEQKKKDLKILSALNEFVKPNPYFVYYMFKDTIHVDDYGSIKETNFKFPSMNKNSN
Ga0186197_106709	Ga0186197_1067094	F015657	LTEGQEILDKRYKVISKVGNGAFGDIYKVEKKRNGEFYAAKVEKG
Ga0186197_110643	Ga0186197_1106431	F080515	QTSEFYKLTGYGAMLDLDIVAVDGREVDFKSNPFSTLHFENTNPTSESKRTITIKNSSPILVPFHWSFYKSKNPSVISLDD
Ga0186197_113718	Ga0186197_1137181	F037232	MPAFKIFDTVNTIYGTGFISAVRPDCYVVQLTNWALAQGQSPTLYLQEDAIKPIPGAFPHTTVATTYGPARIESIRADNVHIAKPINWKLANNSCATLYLQPDGVKLNQTPGFIPGDEVMTVYGQGFVEAKREKDLVVKLRNWKLAQGQSPTLYLQPTACVKIPGLAVGDSAKTVWGMVKILEVRRDGTHVCKALHWKLANNSAPTLYLAPEAFALLSIKP
Ga0186197_114148	Ga0186197_1141481	F067779	VRFIWVVLCYHLYSSFLIWILIKEKKEQMIAKWRYALGESNKVYDAPHKDRRFPVDRKKNYVRYSNFHQVRRNKRLSMIWTNWWCRDQNFRKYFEMRKRHDIRPSLNGFYHEKIYKETEQKNWALA
Ga0186197_114338	Ga0186197_1143383	F009809	LGEIALNNALEKIDECDEETFRDAKNIIELLKENLSLWKEEGEDEKE
Ga0186197_114467	Ga0186197_1144671	F038410	MRPVFSRFIGVTNGPLNYSGLFLYFFMTVLVMSRFRFTRARDTMTFNHQDNPEFWFARYNLMFPPSFLNNRISAHYIEINHIFAVEMIKRYQHARKEILDEREKCSDQEKRTRYITNPNYIYEPLGPDDDKLKRLKDDGKF
Ga0186197_116151	Ga0186197_1161511	F052624	MIYANYINKDMYVFDKYGQWHDEGVYHDALSLEKTYDEKNWYDEFDPTHF
Ga0186197_116364	Ga0186197_1163641	F071293	PRVYPAKKTKTHADLTKFVTVQVHITRYTCMRYYHNYRNISRACKQFLMGDKILEQLMILTIKEHFFRPYYYKSPIENCFYLGRAIADMTDRHYALFANNQHPMQLQVYEEYNRFLRMAHDKATQERYQQLSDRMQQL
Ga0186197_117573	Ga0186197_1175731	F019022	LRMVFHITNYMRETNVWMIRKMRWIFWGFVAFVPIYRVTYWDYLSRRVAWNTYFTAGSEEEQRKRAEEQRANWGYKPRYEPVYNFSIKARKYAL
Ga0186197_119395	Ga0186197_1193951	F051179	ANLPEYTDKDFQNEGMKVDFDLKRVYDMPGLEQLIFFYVNFDKCRKEIIRFEEKRNTPSMNRRHPKDSKKEALDLLRCHAEHLQFEPVCLEPFNDARECLFRMDGQMRVCSPELELFEECVHDPVRFDKFQKLATPVQREPKNFFSTIIRRNYFV