NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300016689

3300016689: Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 011509AT metaT (Metagenome Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300016689 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0128817 | Gp0208592 | Ga0182050
Sample NameMetatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 011509AT metaT (Metagenome Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size62387767
Sequencing Scaffolds29
Novel Protein Genes33
Associated Families31

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available14
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2
All Organisms → cellular organisms → Bacteria → Proteobacteria2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium1
All Organisms → Viruses → Predicted Viral2
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Bathycoccus → Bathycoccus prasinos2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Mamiellaceae → Micromonas → Micromonas commoda1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameCoastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000048Metagenome / Metatranscriptome3365Y
F000052Metagenome / Metatranscriptome3223Y
F002698Metagenome / Metatranscriptome536Y
F004461Metagenome / Metatranscriptome437Y
F005967Metagenome / Metatranscriptome385Y
F012878Metagenome / Metatranscriptome276Y
F016139Metagenome / Metatranscriptome249Y
F019481Metagenome / Metatranscriptome229Y
F020542Metagenome / Metatranscriptome223N
F022590Metagenome / Metatranscriptome213N
F025177Metagenome / Metatranscriptome203Y
F026579Metagenome / Metatranscriptome197N
F027652Metagenome / Metatranscriptome194N
F032260Metagenome / Metatranscriptome180Y
F033053Metagenome / Metatranscriptome178Y
F033652Metagenome / Metatranscriptome176Y
F036244Metagenome / Metatranscriptome170N
F036678Metagenome / Metatranscriptome169N
F039672Metagenome / Metatranscriptome163N
F045998Metagenome / Metatranscriptome152N
F046847Metagenome / Metatranscriptome150N
F059920Metagenome / Metatranscriptome133N
F059984Metagenome / Metatranscriptome133N
F070044Metagenome / Metatranscriptome123N
F070820Metagenome / Metatranscriptome122Y
F082736Metatranscriptome113N
F095509Metagenome / Metatranscriptome105N
F096507Metagenome / Metatranscriptome104Y
F101072Metagenome / Metatranscriptome102N
F105252Metagenome / Metatranscriptome100N
F105291Metagenome / Metatranscriptome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0182050_1001261Not Available656Open in IMG/M
Ga0182050_1008041All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium1155Open in IMG/M
Ga0182050_1009329Not Available1061Open in IMG/M
Ga0182050_1011302Not Available723Open in IMG/M
Ga0182050_1015810Not Available658Open in IMG/M
Ga0182050_1016466Not Available510Open in IMG/M
Ga0182050_1019067Not Available530Open in IMG/M
Ga0182050_1023370Not Available738Open in IMG/M
Ga0182050_1024379All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum613Open in IMG/M
Ga0182050_1034043All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium1028Open in IMG/M
Ga0182050_1035295All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria545Open in IMG/M
Ga0182050_1036194Not Available930Open in IMG/M
Ga0182050_1039145All Organisms → cellular organisms → Bacteria → Proteobacteria683Open in IMG/M
Ga0182050_1039826All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria672Open in IMG/M
Ga0182050_1040465Not Available793Open in IMG/M
Ga0182050_1042838Not Available523Open in IMG/M
Ga0182050_1046389All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum520Open in IMG/M
Ga0182050_1054077All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium541Open in IMG/M
Ga0182050_1060181All Organisms → Viruses → Predicted Viral1997Open in IMG/M
Ga0182050_1062517All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Bathycoccus → Bathycoccus prasinos932Open in IMG/M
Ga0182050_1064449Not Available518Open in IMG/M
Ga0182050_1066458Not Available592Open in IMG/M
Ga0182050_1067784All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes580Open in IMG/M
Ga0182050_1069167All Organisms → Viruses → Predicted Viral1471Open in IMG/M
Ga0182050_1074130Not Available559Open in IMG/M
Ga0182050_1075777All Organisms → cellular organisms → Bacteria → Proteobacteria572Open in IMG/M
Ga0182050_1079412All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Mamiellaceae → Micromonas → Micromonas commoda616Open in IMG/M
Ga0182050_1085477Not Available605Open in IMG/M
Ga0182050_1107248All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Bathycoccus → Bathycoccus prasinos927Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0182050_1001261Ga0182050_10012611F070820KRRRIKPFARPTSFDINVVFDIRHYQSVKYGNVIDPYFPAHGTDEAYHVMEGEVLMTTNTPQVRRYGDHQMHVFSFANGLKADGAVLNASDAAFAPEKSPPKAAVLAGLKYAGVAVTEFAPERDIFEQGFVMTMAGLNTLFNNGNSIIYPGDVICADIPFSAAKGARKNRALQTGVPREKLQFIVTPLRDLMAQGVPERLASRFIMGTALSYSRPGSS
Ga0182050_1008041Ga0182050_10080412F002698DQHALTEFINRVKLIDSFIYMKIKDGQIQSTVYLPQRDAVKHHSIQADTIFQVSEWPDTDKEMKIAFFEGSKVIEAIKHFEHDAIKGELEFIENDDEFVASTLRIFNDELEITLSCSEPSLGFKDLSQDQRDAIFARSDAKFDFTLDTHSIGKVKNLFSLDKDETFGINSDVQGINVNGKSFNVVLTPDTSGNGNVTVYKKYLNLLDKEEQTVYVSDSKVVFESNDSHTLLTISTCQTA
Ga0182050_1009329Ga0182050_10093292F101072MKMNMKMPKLSQQAMIVAFAAVLPVLASAYKLRILDAAVLTLSGALAVYNVNCLTAGSCNTWATIVSISFFVMTIMQLMAPREGLEGDEMPKEEVLVADAKEVTQVPAKDEEKPAATAEPAPTEAKMPVEAKPEKAVVKSAPLVTTDEEFEMLKAQLMG
Ga0182050_1011302Ga0182050_10113021F005967MAVTVATLDWGNRTPDLFIDSMVKSAAVLERFRLIDGVKSKVQVPIFDASLTFGSDLCTFDPQSSASIDEKEMTVSTYKWAFKNCKNVLETTYRSVLLKKGQHNPETMDGEFKDWVFDYFAKLSAQKALELAASELTTEMAADADVITYDTDAVLSDANILTHLEGAYQAMSAEMLSQIYGGADRALRPAIFVGTKAMQHYQIAIADKHTTTPQGIIDGGV
Ga0182050_1015810Ga0182050_10158101F082736LLSSSVFLRFFRSRYRFFLFLQHKLDVARRRHVRVDATVRSVRSSSLRDGLIDLDVRDVEIVNVQPLNLGIRFRVLEQVDQDLRALLRPSALAVRGAFLLGLGRSPDATAESAEDDASLHLHDRVQETLRVTQTSPFDVHRRLSHVLEMDSQIRASRFARFRRV
Ga0182050_1016466Ga0182050_10164661F096507NSTISIGSSSDNGETYSTSFTVDDEVTLTAKIYPDSGDVGEEGELYVVMRSTIDGKSVFSALNQSGNWEIWNLSLKSLPAAQYVEYLESVEEVLIYSGALTAGDRAFYVGYSIFPFPFYGWAVTTNLSPFKITVSE
Ga0182050_1019067Ga0182050_10190672F059920MRHSVGKQLTAGVANTIFVVPQGYKAEVDLLFISNLDANNKTTTAYWQHAHDINHKIKIIDLYPMSSHSYLQFSNGSIVMQQGDSFVIEPQEGA
Ga0182050_1023370Ga0182050_10233701F033652MNKKLFASALFAAGAFVSTSALAALGFETSVGNKADGYLQSGNAKVAAGGSSVRANDILINVGGASDIPASTTTTKSEIIVRLPKGLNFSEVPGFKATQAAPGAGLTLKDGSEYGDPTLDAPGVTWSDANGDGGYDRAVVTVAAASAQGDSLTISINLTADSTATAGVKKVSVVVNSGLAVPQDIVEVVSGFTEPVFSASGTKLKTLSQSAQTATVSTQKFTVTVPKGT
Ga0182050_1024379Ga0182050_10243791F039672PKMAPDLTSKRVGQRLPECSAEVVLSTLLFEEIEFLEGLQSVDSEDKSIVWSHTETGHEILNLNVVEDHGGDVVGVLLGHGLVGVGLNLGGDSVGVSEDSGGDLVAESSGVVVSLLLGVGDSEREVLGDLVEVSPDGGEELSLWVLLNLSGFGSSGLVSSDVLIGNGISSDIWESSNVLNRVWVMVVSLDGSGSGDKSAISQEF
Ga0182050_1027556Ga0182050_10275562F019481ASSAWTSNNIAMYPENYQGSISNSNEFCRFNILPSASDHLAYGGDKSLSGLLIIRIFVKAGEGQTRIMQISDILDNSFENKILTNKTEFGKSYLNVEGLDPANQSLYSAQYIIPFKIYGE
Ga0182050_1034043Ga0182050_10340431F020542ERPDDFRLNDPRDVMGSNATTPRLQIEPFPNLDSYWIYYGTYWWGKHEHHQITDSIWYQKDTVISIQEDITGVAETHTYKLLRVLRRDVMDWVGQRDPKGVQHSPESQVTIYPRNQFVRIDEQGRWISLMIWISPTGLQKWEQVLMDVDMPIGTPWVEDYRVTETDTVIIDDRWAVQVSLREPYSISGVDWIEGVGPSRNSLLPGYDGRQTTYFLKKHFIY
Ga0182050_1035295Ga0182050_10352952F070044DGWSLLEWIRACMDSGVQKPIGLSEAEITAFTDKALFESAPFESALARKSKPQKLVWVTNRTAFVRCALSGTIITMLIGAVIGAAITISSMWVLA
Ga0182050_1036194Ga0182050_10361941F046847VNVMADEQKTAEVDTPTTENNEVVISQSKLDKLIDKGYSKGATRAKSELAEQLGVDSIEQARELINAKKEADEANKSDLDKAAELINTLNARIEGLESNNNQMKSDMEIQKVVNANGINDADYFKHLMAQASAGEDFEQDTFIEQLKGEKPYLFNNGVDSQPKRVDATSNKATLNAADRIKSTTSMAELYRLQDEIT
Ga0182050_1039145Ga0182050_10391452F105291FEVIEMTETCKQMVHSSAAVRMAVMPWGSRSTAVLTNDLTSNISINKTWHENCKKPDVSKILDWLVL
Ga0182050_1039826Ga0182050_10398263F070044SLLVWIRACMDSGVQKPIGLSEAEITAFTDKALFESALARKSESKKLLWVTNPTAFVRRALSGTIITMLIGAVIGAAITISSMWVLA
Ga0182050_1040465Ga0182050_10404651F026579WRENMRINLIILMLAFAVMSVSQPTYSETISEVKIIFSADDGEKKPADEEPDCE
Ga0182050_1042838Ga0182050_10428381F012878MAIRGDDNHPGLKNLVSIKDSEMAEEWRKRGLEVRRKNKEKRELAKQTILAMKSLGDEAPDAMSALNYVLVQAMEEGDTDQIIKVASILAEYQAPKLSRQDVTQTNLDASDLTDEELQA
Ga0182050_1046389Ga0182050_10463891F016139MCSFLAHSSNVNDLLEGLDGVLENWLNRLHDSESSLHVVNLWLHSLDSLHLSGDLNEWLSIIKSLEDSSGKSLLDVLDGSGLGNSGVSISSGLSGLSLGELGLKGDKELVLVHGVVSLFGLEELSVVVVVVVSGSSRSNKGDSGEFHCLK
Ga0182050_1054077Ga0182050_10540772F033053MNEAGTRAAATEVLTNNVHMKAADVPKYLETYFAKAWGHFDVNRVGKVEVIKMPQFMRFLASDQYLSLQHY
Ga0182050_1054677Ga0182050_10546771F000048TSEVAATEGLAKPTNLDEVKALNDKVGAFAKSCENYLKVLMSADGAAKKMTTHAEADAEVAALKGRYDKVKAVSDTWVAKVDTLLKEWTLLDNTVTELNTWVAKDKSADGENQFSLEKMESTLGELKNIFKQKEKLVDGL
Ga0182050_1060181Ga0182050_10601811F032260MTVAANASLKTEQKTLTGGNWTKILDEDHTRTYLCIQNHHDAHTIEVGFGTNTTEPTAATGFKLEGAVSGNKIGDTTFEFSVAPINAVWAKAEDTHD
Ga0182050_1062517Ga0182050_10625171F045998RKKHDHRTHCCDTQQQLYSNIIKMGKINIETEVESVLSEQSATCEKLKIRVSETVEGVNLSAKFVLPVNVEVSSKGNLDANMQTSKVDLEAAKDFWKIKLDDVDQNTQNIMDVLKISVREKVSAIDSTATLEWKAKGNAVKGILESPVFEGVKSTLEFDNSKKQLTVTAKKKIDKIDVSVKADANVKTQTFKGGKMTLSYPLPEGVKGSLEASTNGSGKITLRRGNLSAKMPLKNFTSAPNMNDVKLEFNYSTDIASF
Ga0182050_1064449Ga0182050_10644491F025177QMSIFAGSEASELDVREEAHAILRALNQIEMQLEAAIAAERILDRKQRN
Ga0182050_1066458Ga0182050_10664581F033652MNKKLFASALFAAGAFVSTSALAALSVENSVGNTAAGYLQTDHAKVAAGGDPVQANDIIIGVGATTDIPAKSEIVVRLPEGLNFSEVPGFKVAQATAGSGLTLVDGSEFGDPTLDAPGVTWADANGDGGYDRAVITVAAAGAVGDSLTISVNLTADSTVTKGAKKISVVANNGLATPKEI
Ga0182050_1067784Ga0182050_10677841F095509YFMKKHMISTAIGLLAIACTQAPEPCPPQQESPAVGFNNLVEDFPGAEMGSQSDVDIWLKYLEYLNAKDLEGLATLQADSIEVHTANGRYIKGAEAHRAALSEWIYDTDATWKPVWGTAIRQAGGDTTGSFVMAVSDMTVRDGEETRRVNNMFTVWIKDSKVQAFWFYKRDFTQKELDMIEAAEAAKAQE
Ga0182050_1069167Ga0182050_10691672F004461MVKSAAVLNRFRLIDGVKAKVNVPIFDASLTFGNDLCVFDPQSAASVGEKEMTVETYKWSFLNCKDALESSYRGLLLKQGQHNPETMDAEFKDWVFDYFAKLSAQKALELAGTELTTEMAADADVLDYDTNATISSTNVLSLMEGAYETMSDVMLAAVYGDADRDFKPTYFLGTAAMQAYQIAIAGLYTTTPQGVVEGGIPSYYGMEVAHFASMPANEFIIAAPQNLVMLTDDYNDVRAIDMKYEAELSSDKIWGQFKLGFSYLKGEEIVYAKNFA
Ga0182050_1070145Ga0182050_10701451F000052TRRLVPAQNIVPVRDSRQGASDVDVSFPAVAAAGPGADGKRCIDKVEMVEETEYDEVVQCDHSYDRRCHTSYVTNYESQQEEECEENFRKNCFIDYEKIAFNETVQICRTPLVKDCDVQGPEICRTEYESECWTKQEEHDVEDDVVECTTVQDEKCADETSGYTTFTKCSKWPREVCSVAKKNVKKYTPITGCTKEPRELCAPAGCGFKEGAEVCYDKTQTIVQDAPKEECTLEPQRTCAHVTKLVPKLEP
Ga0182050_1074130Ga0182050_10741301F036678FPDTMRQTPINFSHAIAMTLLALAPAMVQGQATALPPAYLVAGDAAVSEPLINEVVGTYKYRKVVRVDGEEDRNMEIKLDVLPRSPTRLYAELFVPNRNLQNCTYRGIFEFKGSNEFIAIDDVNNPKSCIMEFKINANSIVLIDQSHDRKQCSIKASCHPDGSVDRIYFSKHIKEKTNLVSSILTS
Ga0182050_1075777Ga0182050_10757773F036244FVVFLSFLFQFTFAKGETESDESLLSELQSELQEVINWECSPDNPSLGKFINLKCNLLSTGD
Ga0182050_1079412Ga0182050_10794121F105252QHQSNMQKYSHPTFKTKNPGFIHISHDAEIHDGLRLSYGFCSYNFLCWQGVKARSYTQVQENRVETNTPVMLCPGFCIKDVIDVTYYDQISAPYKRATCGTPYHLCCFIELCGQVAATAPHPALNNLCCPCLRKYQIGLADAETFSTEMEKSYEAFKAKPSERAAPKVQVME
Ga0182050_1085477Ga0182050_10854771F059984MNQSTKQQRPLAIAFVLGMLLTLFMGLMVLRMETAMLETGRTGFEGVGGLFVLLVTLLAVLVAGAVLWAMPSIQQQERRVQWSRLFSLKALVYFGLLFFVGFQIGPGVVLGDVSAGEVLFMLFVMAGLSV
Ga0182050_1107248Ga0182050_11072481F027652KQLIKLKYRRIFTMFKSVFPKFNKESFGQRLEKVPKEFHKYMVEQQRFIRLRQSAEAILKRKKPLLEEMVSKVHDHERKNMDVYVLHDSTLPRDLVLIFRRDKSGAYNNVSSPEIDRLRTKIQHCKEEIIRLQEQIYPRGTEDGLSPEEKYDRIHPKGYYKNEAATRRPTKLEHDINTTEFSVWDKPDTRTPFQKGDEPVLSDLIKAGVYVYPVRPVNWKTPTDVETPPERIHVTYCDHIENTEETSESDEGREN
Ga0182050_1116042Ga0182050_11160421F022590EVGESHTLTIDGVSFTYNVAEGDTAEVVANALLSQINASFADSEISAALIMREEERWDPETDTSMFMTVVDRIEISGPADVLTPEVMSGITLSSVDISGSEMHATMGETGTPGTPSTAQIHLSTLNGHEAPEVGESHTLTIDGVSFTYNVAEGDTAEVVANALLSQINASFA

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