| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300016689 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0128817 | Gp0208592 | Ga0182050 |
| Sample Name | Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 011509AT metaT (Metagenome Metatranscriptome) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 62387767 |
| Sequencing Scaffolds | 29 |
| Novel Protein Genes | 33 |
| Associated Families | 31 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 14 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium | 1 |
| All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum | 2 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 2 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria | 2 |
| All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium | 1 |
| All Organisms → Viruses → Predicted Viral | 2 |
| All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Bathycoccus → Bathycoccus prasinos | 2 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 1 |
| All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Mamiellaceae → Micromonas → Micromonas commoda | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 31.972 | Long. (o) | -81.028 | Alt. (m) | N/A | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000048 | Metagenome / Metatranscriptome | 3365 | Y |
| F000052 | Metagenome / Metatranscriptome | 3223 | Y |
| F002698 | Metagenome / Metatranscriptome | 536 | Y |
| F004461 | Metagenome / Metatranscriptome | 437 | Y |
| F005967 | Metagenome / Metatranscriptome | 385 | Y |
| F012878 | Metagenome / Metatranscriptome | 276 | Y |
| F016139 | Metagenome / Metatranscriptome | 249 | Y |
| F019481 | Metagenome / Metatranscriptome | 229 | Y |
| F020542 | Metagenome / Metatranscriptome | 223 | N |
| F022590 | Metagenome / Metatranscriptome | 213 | N |
| F025177 | Metagenome / Metatranscriptome | 203 | Y |
| F026579 | Metagenome / Metatranscriptome | 197 | N |
| F027652 | Metagenome / Metatranscriptome | 194 | N |
| F032260 | Metagenome / Metatranscriptome | 180 | Y |
| F033053 | Metagenome / Metatranscriptome | 178 | Y |
| F033652 | Metagenome / Metatranscriptome | 176 | Y |
| F036244 | Metagenome / Metatranscriptome | 170 | N |
| F036678 | Metagenome / Metatranscriptome | 169 | N |
| F039672 | Metagenome / Metatranscriptome | 163 | N |
| F045998 | Metagenome / Metatranscriptome | 152 | N |
| F046847 | Metagenome / Metatranscriptome | 150 | N |
| F059920 | Metagenome / Metatranscriptome | 133 | N |
| F059984 | Metagenome / Metatranscriptome | 133 | N |
| F070044 | Metagenome / Metatranscriptome | 123 | N |
| F070820 | Metagenome / Metatranscriptome | 122 | Y |
| F082736 | Metatranscriptome | 113 | N |
| F095509 | Metagenome / Metatranscriptome | 105 | N |
| F096507 | Metagenome / Metatranscriptome | 104 | Y |
| F101072 | Metagenome / Metatranscriptome | 102 | N |
| F105252 | Metagenome / Metatranscriptome | 100 | N |
| F105291 | Metagenome / Metatranscriptome | 100 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0182050_1001261 | Not Available | 656 | Open in IMG/M |
| Ga0182050_1008041 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium | 1155 | Open in IMG/M |
| Ga0182050_1009329 | Not Available | 1061 | Open in IMG/M |
| Ga0182050_1011302 | Not Available | 723 | Open in IMG/M |
| Ga0182050_1015810 | Not Available | 658 | Open in IMG/M |
| Ga0182050_1016466 | Not Available | 510 | Open in IMG/M |
| Ga0182050_1019067 | Not Available | 530 | Open in IMG/M |
| Ga0182050_1023370 | Not Available | 738 | Open in IMG/M |
| Ga0182050_1024379 | All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum | 613 | Open in IMG/M |
| Ga0182050_1034043 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | 1028 | Open in IMG/M |
| Ga0182050_1035295 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 545 | Open in IMG/M |
| Ga0182050_1036194 | Not Available | 930 | Open in IMG/M |
| Ga0182050_1039145 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 683 | Open in IMG/M |
| Ga0182050_1039826 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 672 | Open in IMG/M |
| Ga0182050_1040465 | Not Available | 793 | Open in IMG/M |
| Ga0182050_1042838 | Not Available | 523 | Open in IMG/M |
| Ga0182050_1046389 | All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum | 520 | Open in IMG/M |
| Ga0182050_1054077 | All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium | 541 | Open in IMG/M |
| Ga0182050_1060181 | All Organisms → Viruses → Predicted Viral | 1997 | Open in IMG/M |
| Ga0182050_1062517 | All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Bathycoccus → Bathycoccus prasinos | 932 | Open in IMG/M |
| Ga0182050_1064449 | Not Available | 518 | Open in IMG/M |
| Ga0182050_1066458 | Not Available | 592 | Open in IMG/M |
| Ga0182050_1067784 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 580 | Open in IMG/M |
| Ga0182050_1069167 | All Organisms → Viruses → Predicted Viral | 1471 | Open in IMG/M |
| Ga0182050_1074130 | Not Available | 559 | Open in IMG/M |
| Ga0182050_1075777 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 572 | Open in IMG/M |
| Ga0182050_1079412 | All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Mamiellaceae → Micromonas → Micromonas commoda | 616 | Open in IMG/M |
| Ga0182050_1085477 | Not Available | 605 | Open in IMG/M |
| Ga0182050_1107248 | All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Bathycoccus → Bathycoccus prasinos | 927 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0182050_1001261 | Ga0182050_10012611 | F070820 | KRRRIKPFARPTSFDINVVFDIRHYQSVKYGNVIDPYFPAHGTDEAYHVMEGEVLMTTNTPQVRRYGDHQMHVFSFANGLKADGAVLNASDAAFAPEKSPPKAAVLAGLKYAGVAVTEFAPERDIFEQGFVMTMAGLNTLFNNGNSIIYPGDVICADIPFSAAKGARKNRALQTGVPREKLQFIVTPLRDLMAQGVPERLASRFIMGTALSYSRPGSS |
| Ga0182050_1008041 | Ga0182050_10080412 | F002698 | DQHALTEFINRVKLIDSFIYMKIKDGQIQSTVYLPQRDAVKHHSIQADTIFQVSEWPDTDKEMKIAFFEGSKVIEAIKHFEHDAIKGELEFIENDDEFVASTLRIFNDELEITLSCSEPSLGFKDLSQDQRDAIFARSDAKFDFTLDTHSIGKVKNLFSLDKDETFGINSDVQGINVNGKSFNVVLTPDTSGNGNVTVYKKYLNLLDKEEQTVYVSDSKVVFESNDSHTLLTISTCQTA |
| Ga0182050_1009329 | Ga0182050_10093292 | F101072 | MKMNMKMPKLSQQAMIVAFAAVLPVLASAYKLRILDAAVLTLSGALAVYNVNCLTAGSCNTWATIVSISFFVMTIMQLMAPREGLEGDEMPKEEVLVADAKEVTQVPAKDEEKPAATAEPAPTEAKMPVEAKPEKAVVKSAPLVTTDEEFEMLKAQLMG |
| Ga0182050_1011302 | Ga0182050_10113021 | F005967 | MAVTVATLDWGNRTPDLFIDSMVKSAAVLERFRLIDGVKSKVQVPIFDASLTFGSDLCTFDPQSSASIDEKEMTVSTYKWAFKNCKNVLETTYRSVLLKKGQHNPETMDGEFKDWVFDYFAKLSAQKALELAASELTTEMAADADVITYDTDAVLSDANILTHLEGAYQAMSAEMLSQIYGGADRALRPAIFVGTKAMQHYQIAIADKHTTTPQGIIDGGV |
| Ga0182050_1015810 | Ga0182050_10158101 | F082736 | LLSSSVFLRFFRSRYRFFLFLQHKLDVARRRHVRVDATVRSVRSSSLRDGLIDLDVRDVEIVNVQPLNLGIRFRVLEQVDQDLRALLRPSALAVRGAFLLGLGRSPDATAESAEDDASLHLHDRVQETLRVTQTSPFDVHRRLSHVLEMDSQIRASRFARFRRV |
| Ga0182050_1016466 | Ga0182050_10164661 | F096507 | NSTISIGSSSDNGETYSTSFTVDDEVTLTAKIYPDSGDVGEEGELYVVMRSTIDGKSVFSALNQSGNWEIWNLSLKSLPAAQYVEYLESVEEVLIYSGALTAGDRAFYVGYSIFPFPFYGWAVTTNLSPFKITVSE |
| Ga0182050_1019067 | Ga0182050_10190672 | F059920 | MRHSVGKQLTAGVANTIFVVPQGYKAEVDLLFISNLDANNKTTTAYWQHAHDINHKIKIIDLYPMSSHSYLQFSNGSIVMQQGDSFVIEPQEGA |
| Ga0182050_1023370 | Ga0182050_10233701 | F033652 | MNKKLFASALFAAGAFVSTSALAALGFETSVGNKADGYLQSGNAKVAAGGSSVRANDILINVGGASDIPASTTTTKSEIIVRLPKGLNFSEVPGFKATQAAPGAGLTLKDGSEYGDPTLDAPGVTWSDANGDGGYDRAVVTVAAASAQGDSLTISINLTADSTATAGVKKVSVVVNSGLAVPQDIVEVVSGFTEPVFSASGTKLKTLSQSAQTATVSTQKFTVTVPKGT |
| Ga0182050_1024379 | Ga0182050_10243791 | F039672 | PKMAPDLTSKRVGQRLPECSAEVVLSTLLFEEIEFLEGLQSVDSEDKSIVWSHTETGHEILNLNVVEDHGGDVVGVLLGHGLVGVGLNLGGDSVGVSEDSGGDLVAESSGVVVSLLLGVGDSEREVLGDLVEVSPDGGEELSLWVLLNLSGFGSSGLVSSDVLIGNGISSDIWESSNVLNRVWVMVVSLDGSGSGDKSAISQEF |
| Ga0182050_1027556 | Ga0182050_10275562 | F019481 | ASSAWTSNNIAMYPENYQGSISNSNEFCRFNILPSASDHLAYGGDKSLSGLLIIRIFVKAGEGQTRIMQISDILDNSFENKILTNKTEFGKSYLNVEGLDPANQSLYSAQYIIPFKIYGE |
| Ga0182050_1034043 | Ga0182050_10340431 | F020542 | ERPDDFRLNDPRDVMGSNATTPRLQIEPFPNLDSYWIYYGTYWWGKHEHHQITDSIWYQKDTVISIQEDITGVAETHTYKLLRVLRRDVMDWVGQRDPKGVQHSPESQVTIYPRNQFVRIDEQGRWISLMIWISPTGLQKWEQVLMDVDMPIGTPWVEDYRVTETDTVIIDDRWAVQVSLREPYSISGVDWIEGVGPSRNSLLPGYDGRQTTYFLKKHFIY |
| Ga0182050_1035295 | Ga0182050_10352952 | F070044 | DGWSLLEWIRACMDSGVQKPIGLSEAEITAFTDKALFESAPFESALARKSKPQKLVWVTNRTAFVRCALSGTIITMLIGAVIGAAITISSMWVLA |
| Ga0182050_1036194 | Ga0182050_10361941 | F046847 | VNVMADEQKTAEVDTPTTENNEVVISQSKLDKLIDKGYSKGATRAKSELAEQLGVDSIEQARELINAKKEADEANKSDLDKAAELINTLNARIEGLESNNNQMKSDMEIQKVVNANGINDADYFKHLMAQASAGEDFEQDTFIEQLKGEKPYLFNNGVDSQPKRVDATSNKATLNAADRIKSTTSMAELYRLQDEIT |
| Ga0182050_1039145 | Ga0182050_10391452 | F105291 | FEVIEMTETCKQMVHSSAAVRMAVMPWGSRSTAVLTNDLTSNISINKTWHENCKKPDVSKILDWLVL |
| Ga0182050_1039826 | Ga0182050_10398263 | F070044 | SLLVWIRACMDSGVQKPIGLSEAEITAFTDKALFESALARKSESKKLLWVTNPTAFVRRALSGTIITMLIGAVIGAAITISSMWVLA |
| Ga0182050_1040465 | Ga0182050_10404651 | F026579 | WRENMRINLIILMLAFAVMSVSQPTYSETISEVKIIFSADDGEKKPADEEPDCE |
| Ga0182050_1042838 | Ga0182050_10428381 | F012878 | MAIRGDDNHPGLKNLVSIKDSEMAEEWRKRGLEVRRKNKEKRELAKQTILAMKSLGDEAPDAMSALNYVLVQAMEEGDTDQIIKVASILAEYQAPKLSRQDVTQTNLDASDLTDEELQA |
| Ga0182050_1046389 | Ga0182050_10463891 | F016139 | MCSFLAHSSNVNDLLEGLDGVLENWLNRLHDSESSLHVVNLWLHSLDSLHLSGDLNEWLSIIKSLEDSSGKSLLDVLDGSGLGNSGVSISSGLSGLSLGELGLKGDKELVLVHGVVSLFGLEELSVVVVVVVSGSSRSNKGDSGEFHCLK |
| Ga0182050_1054077 | Ga0182050_10540772 | F033053 | MNEAGTRAAATEVLTNNVHMKAADVPKYLETYFAKAWGHFDVNRVGKVEVIKMPQFMRFLASDQYLSLQHY |
| Ga0182050_1054677 | Ga0182050_10546771 | F000048 | TSEVAATEGLAKPTNLDEVKALNDKVGAFAKSCENYLKVLMSADGAAKKMTTHAEADAEVAALKGRYDKVKAVSDTWVAKVDTLLKEWTLLDNTVTELNTWVAKDKSADGENQFSLEKMESTLGELKNIFKQKEKLVDGL |
| Ga0182050_1060181 | Ga0182050_10601811 | F032260 | MTVAANASLKTEQKTLTGGNWTKILDEDHTRTYLCIQNHHDAHTIEVGFGTNTTEPTAATGFKLEGAVSGNKIGDTTFEFSVAPINAVWAKAEDTHD |
| Ga0182050_1062517 | Ga0182050_10625171 | F045998 | RKKHDHRTHCCDTQQQLYSNIIKMGKINIETEVESVLSEQSATCEKLKIRVSETVEGVNLSAKFVLPVNVEVSSKGNLDANMQTSKVDLEAAKDFWKIKLDDVDQNTQNIMDVLKISVREKVSAIDSTATLEWKAKGNAVKGILESPVFEGVKSTLEFDNSKKQLTVTAKKKIDKIDVSVKADANVKTQTFKGGKMTLSYPLPEGVKGSLEASTNGSGKITLRRGNLSAKMPLKNFTSAPNMNDVKLEFNYSTDIASF |
| Ga0182050_1064449 | Ga0182050_10644491 | F025177 | QMSIFAGSEASELDVREEAHAILRALNQIEMQLEAAIAAERILDRKQRN |
| Ga0182050_1066458 | Ga0182050_10664581 | F033652 | MNKKLFASALFAAGAFVSTSALAALSVENSVGNTAAGYLQTDHAKVAAGGDPVQANDIIIGVGATTDIPAKSEIVVRLPEGLNFSEVPGFKVAQATAGSGLTLVDGSEFGDPTLDAPGVTWADANGDGGYDRAVITVAAAGAVGDSLTISVNLTADSTVTKGAKKISVVANNGLATPKEI |
| Ga0182050_1067784 | Ga0182050_10677841 | F095509 | YFMKKHMISTAIGLLAIACTQAPEPCPPQQESPAVGFNNLVEDFPGAEMGSQSDVDIWLKYLEYLNAKDLEGLATLQADSIEVHTANGRYIKGAEAHRAALSEWIYDTDATWKPVWGTAIRQAGGDTTGSFVMAVSDMTVRDGEETRRVNNMFTVWIKDSKVQAFWFYKRDFTQKELDMIEAAEAAKAQE |
| Ga0182050_1069167 | Ga0182050_10691672 | F004461 | MVKSAAVLNRFRLIDGVKAKVNVPIFDASLTFGNDLCVFDPQSAASVGEKEMTVETYKWSFLNCKDALESSYRGLLLKQGQHNPETMDAEFKDWVFDYFAKLSAQKALELAGTELTTEMAADADVLDYDTNATISSTNVLSLMEGAYETMSDVMLAAVYGDADRDFKPTYFLGTAAMQAYQIAIAGLYTTTPQGVVEGGIPSYYGMEVAHFASMPANEFIIAAPQNLVMLTDDYNDVRAIDMKYEAELSSDKIWGQFKLGFSYLKGEEIVYAKNFA |
| Ga0182050_1070145 | Ga0182050_10701451 | F000052 | TRRLVPAQNIVPVRDSRQGASDVDVSFPAVAAAGPGADGKRCIDKVEMVEETEYDEVVQCDHSYDRRCHTSYVTNYESQQEEECEENFRKNCFIDYEKIAFNETVQICRTPLVKDCDVQGPEICRTEYESECWTKQEEHDVEDDVVECTTVQDEKCADETSGYTTFTKCSKWPREVCSVAKKNVKKYTPITGCTKEPRELCAPAGCGFKEGAEVCYDKTQTIVQDAPKEECTLEPQRTCAHVTKLVPKLEP |
| Ga0182050_1074130 | Ga0182050_10741301 | F036678 | FPDTMRQTPINFSHAIAMTLLALAPAMVQGQATALPPAYLVAGDAAVSEPLINEVVGTYKYRKVVRVDGEEDRNMEIKLDVLPRSPTRLYAELFVPNRNLQNCTYRGIFEFKGSNEFIAIDDVNNPKSCIMEFKINANSIVLIDQSHDRKQCSIKASCHPDGSVDRIYFSKHIKEKTNLVSSILTS |
| Ga0182050_1075777 | Ga0182050_10757773 | F036244 | FVVFLSFLFQFTFAKGETESDESLLSELQSELQEVINWECSPDNPSLGKFINLKCNLLSTGD |
| Ga0182050_1079412 | Ga0182050_10794121 | F105252 | QHQSNMQKYSHPTFKTKNPGFIHISHDAEIHDGLRLSYGFCSYNFLCWQGVKARSYTQVQENRVETNTPVMLCPGFCIKDVIDVTYYDQISAPYKRATCGTPYHLCCFIELCGQVAATAPHPALNNLCCPCLRKYQIGLADAETFSTEMEKSYEAFKAKPSERAAPKVQVME |
| Ga0182050_1085477 | Ga0182050_10854771 | F059984 | MNQSTKQQRPLAIAFVLGMLLTLFMGLMVLRMETAMLETGRTGFEGVGGLFVLLVTLLAVLVAGAVLWAMPSIQQQERRVQWSRLFSLKALVYFGLLFFVGFQIGPGVVLGDVSAGEVLFMLFVMAGLSV |
| Ga0182050_1107248 | Ga0182050_11072481 | F027652 | KQLIKLKYRRIFTMFKSVFPKFNKESFGQRLEKVPKEFHKYMVEQQRFIRLRQSAEAILKRKKPLLEEMVSKVHDHERKNMDVYVLHDSTLPRDLVLIFRRDKSGAYNNVSSPEIDRLRTKIQHCKEEIIRLQEQIYPRGTEDGLSPEEKYDRIHPKGYYKNEAATRRPTKLEHDINTTEFSVWDKPDTRTPFQKGDEPVLSDLIKAGVYVYPVRPVNWKTPTDVETPPERIHVTYCDHIENTEETSESDEGREN |
| Ga0182050_1116042 | Ga0182050_11160421 | F022590 | EVGESHTLTIDGVSFTYNVAEGDTAEVVANALLSQINASFADSEISAALIMREEERWDPETDTSMFMTVVDRIEISGPADVLTPEVMSGITLSSVDISGSEMHATMGETGTPGTPSTAQIHLSTLNGHEAPEVGESHTLTIDGVSFTYNVAEGDTAEVVANALLSQINASFA |
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